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Conserved domains on  [gi|490458066|ref|WP_004328782|]
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MULTISPECIES: hypothetical protein [Alistipes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PKD_5 super family cl44830
PKD-like domain; Presumed PKD-like domain found as tandem repeats in bacterial cell surface ...
 28-85 9.27e-03

PKD-like domain; Presumed PKD-like domain found as tandem repeats in bacterial cell surface proteins, commonly associated with Bact_lectin adhesive domain.


The actual alignment was detected with superfamily member pfam19406:

Pssm-ID: 437238 [Multi-domain]  Cd Length: 95  Bit Score: 35.85  E-value: 9.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490458066   28 ETTPPPPGESATLTISDVKAEANTVTFTITPKNVD-----VYTYTIksaTVTPQATVQDPAET 85
Cdd:pfam19406  34 ETLIATTTTSITDVLINTSGVAQTVIYTITPTSSDgcvgdPFTYTV---TVNPEPVGTAAAND 93
 
Name Accession Description Interval E-value
PKD_5 pfam19406
PKD-like domain; Presumed PKD-like domain found as tandem repeats in bacterial cell surface ...
 28-85 9.27e-03

PKD-like domain; Presumed PKD-like domain found as tandem repeats in bacterial cell surface proteins, commonly associated with Bact_lectin adhesive domain.


Pssm-ID: 437238 [Multi-domain]  Cd Length: 95  Bit Score: 35.85  E-value: 9.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490458066   28 ETTPPPPGESATLTISDVKAEANTVTFTITPKNVD-----VYTYTIksaTVTPQATVQDPAET 85
Cdd:pfam19406  34 ETLIATTTTSITDVLINTSGVAQTVIYTITPTSSDgcvgdPFTYTV---TVNPEPVGTAAAND 93
 
Name Accession Description Interval E-value
PKD_5 pfam19406
PKD-like domain; Presumed PKD-like domain found as tandem repeats in bacterial cell surface ...
 28-85 9.27e-03

PKD-like domain; Presumed PKD-like domain found as tandem repeats in bacterial cell surface proteins, commonly associated with Bact_lectin adhesive domain.


Pssm-ID: 437238 [Multi-domain]  Cd Length: 95  Bit Score: 35.85  E-value: 9.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490458066   28 ETTPPPPGESATLTISDVKAEANTVTFTITPKNVD-----VYTYTIksaTVTPQATVQDPAET 85
Cdd:pfam19406  34 ETLIATTTTSITDVLINTSGVAQTVIYTITPTSSDgcvgdPFTYTV---TVNPEPVGTAAAND 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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