NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490434502|ref|WP_004305566|]
View 

MULTISPECIES: 30S ribosomal protein S2 [Bacteroides]

Protein Classification

small ribosomal subunit protein uS2( domain architecture ID 10784974)

small ribosomal subunit protein uS2 (30S ribosomal protein S2) is an essential component of the translation machinery

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803
SCOP:  4003744

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
RpsB COG0052
Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S2 ...
1-253 3.01e-147

Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S2 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439822  Cd Length: 253  Bit Score: 412.58  E-value: 3.01e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   1 MSRTNFDTLLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVV 80
Cdd:COG0052    1 MAVVTMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPLLEEAYNFVRDVAANGGKILFVGTKKQAQEII 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  81 AEKAQSVNMPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSA 160
Cdd:COG0052   81 AEEAERCGMPYVNERWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLRREREKLEKNLGGIKDMKRLPDA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502 161 LFVIDVMKENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEERKAEKIDMEAAGE 240
Cdd:COG0052  161 LFVVDPKKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLITSKIADAILEGKQGRKAEAEEEEEEAE 240
                        250
                 ....*....|...
gi 490434502 241 APANKGKKKSVKA 253
Cdd:COG0052  241 EFVEAEEEEAAEA 253
 
Name Accession Description Interval E-value
RpsB COG0052
Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S2 ...
1-253 3.01e-147

Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S2 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439822  Cd Length: 253  Bit Score: 412.58  E-value: 3.01e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   1 MSRTNFDTLLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVV 80
Cdd:COG0052    1 MAVVTMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPLLEEAYNFVRDVAANGGKILFVGTKKQAQEII 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  81 AEKAQSVNMPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSA 160
Cdd:COG0052   81 AEEAERCGMPYVNERWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLRREREKLEKNLGGIKDMKRLPDA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502 161 LFVIDVMKENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEERKAEKIDMEAAGE 240
Cdd:COG0052  161 LFVVDPKKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLITSKIADAILEGKQGRKAEAEEEEEEAE 240
                        250
                 ....*....|...
gi 490434502 241 APANKGKKKSVKA 253
Cdd:COG0052  241 EFVEAEEEEAAEA 253
rpsB PRK05299
30S ribosomal protein S2; Provisional
1-253 8.39e-136

30S ribosomal protein S2; Provisional


Pssm-ID: 235396  Cd Length: 258  Bit Score: 383.75  E-value: 8.39e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   1 MSRTNFDTLLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVV 80
Cdd:PRK05299   1 MAVVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  81 AEKAQSVNMPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSA 160
Cdd:PRK05299  81 AEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502 161 LFVIDVMKENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEERKAEKIDMEAAGE 240
Cdd:PRK05299 161 LFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQGRLAEAAEEEEEEA 240
                        250
                 ....*....|...
gi 490434502 241 APANKGKKKSVKA 253
Cdd:PRK05299 241 EEEEEEEEEEEAE 253
Ribosomal_S2 pfam00318
Ribosomal protein S2;
9-224 1.86e-123

Ribosomal protein S2;


Pssm-ID: 459759  Cd Length: 216  Bit Score: 350.58  E-value: 1.86e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502    9 LLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVVAEKAQSVN 88
Cdd:pfam00318   1 LLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLEKTLPLLRRAYKVVREVAAKGGKILFVGTKKQAQEAIKEAAKRCG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   89 MPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSALFVIDVMK 168
Cdd:pfam00318  81 MYYVNERWLGGMLTNFKTIRKSIKRLKELEEMEEDGTFEDLTKKEALTLKREREKLEKNLGGIKDMKRLPDLLFVLDPNK 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 490434502  169 ENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEG 224
Cdd:pfam00318 161 EKIAVKEARKLGIPVIGIVDTNCDPDLVDYPIPGNDDAIRSIKLILGVLADAIIEG 216
rpsB_bact TIGR01011
ribosomal protein S2, bacterial type; This model describes the bacterial, ribosomal, and ...
9-227 3.29e-106

ribosomal protein S2, bacterial type; This model describes the bacterial, ribosomal, and chloroplast forms of ribosomal protein S2. TIGR01012 describes the archaeal and cytosolic forms. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130084  Cd Length: 225  Bit Score: 307.32  E-value: 3.29e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502    9 LLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVVAEKAQSVN 88
Cdd:TIGR01011   7 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEEAERCG 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   89 MPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSALFVIDVMK 168
Cdd:TIGR01011  87 MFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVK 166
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 490434502  169 ENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEE 227
Cdd:TIGR01011 167 EKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQE 225
RPS2 cd01425
Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, ...
9-223 4.68e-89

Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones.


Pssm-ID: 100106  Cd Length: 193  Bit Score: 262.90  E-value: 4.68e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   9 LLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVVAEKAQSVN 88
Cdd:cd01425    1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  89 MPYVIERWPGGMLTNFPTIRKAVKKMATIDKltndgtysnlskrevlqisrqrAKLDKTLGSIADLTRLPSALFVIDVMK 168
Cdd:cd01425   81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK 138
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 490434502 169 ENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIE 223
Cdd:cd01425  139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193
 
Name Accession Description Interval E-value
RpsB COG0052
Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S2 ...
1-253 3.01e-147

Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S2 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439822  Cd Length: 253  Bit Score: 412.58  E-value: 3.01e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   1 MSRTNFDTLLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVV 80
Cdd:COG0052    1 MAVVTMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPLLEEAYNFVRDVAANGGKILFVGTKKQAQEII 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  81 AEKAQSVNMPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSA 160
Cdd:COG0052   81 AEEAERCGMPYVNERWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLRREREKLEKNLGGIKDMKRLPDA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502 161 LFVIDVMKENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEERKAEKIDMEAAGE 240
Cdd:COG0052  161 LFVVDPKKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLITSKIADAILEGKQGRKAEAEEEEEEAE 240
                        250
                 ....*....|...
gi 490434502 241 APANKGKKKSVKA 253
Cdd:COG0052  241 EFVEAEEEEAAEA 253
rpsB PRK05299
30S ribosomal protein S2; Provisional
1-253 8.39e-136

30S ribosomal protein S2; Provisional


Pssm-ID: 235396  Cd Length: 258  Bit Score: 383.75  E-value: 8.39e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   1 MSRTNFDTLLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVV 80
Cdd:PRK05299   1 MAVVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  81 AEKAQSVNMPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSA 160
Cdd:PRK05299  81 AEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502 161 LFVIDVMKENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEERKAEKIDMEAAGE 240
Cdd:PRK05299 161 LFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQGRLAEAAEEEEEEA 240
                        250
                 ....*....|...
gi 490434502 241 APANKGKKKSVKA 253
Cdd:PRK05299 241 EEEEEEEEEEEAE 253
Ribosomal_S2 pfam00318
Ribosomal protein S2;
9-224 1.86e-123

Ribosomal protein S2;


Pssm-ID: 459759  Cd Length: 216  Bit Score: 350.58  E-value: 1.86e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502    9 LLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVVAEKAQSVN 88
Cdd:pfam00318   1 LLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLEKTLPLLRRAYKVVREVAAKGGKILFVGTKKQAQEAIKEAAKRCG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   89 MPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSALFVIDVMK 168
Cdd:pfam00318  81 MYYVNERWLGGMLTNFKTIRKSIKRLKELEEMEEDGTFEDLTKKEALTLKREREKLEKNLGGIKDMKRLPDLLFVLDPNK 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 490434502  169 ENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEG 224
Cdd:pfam00318 161 EKIAVKEARKLGIPVIGIVDTNCDPDLVDYPIPGNDDAIRSIKLILGVLADAIIEG 216
rpsB_bact TIGR01011
ribosomal protein S2, bacterial type; This model describes the bacterial, ribosomal, and ...
9-227 3.29e-106

ribosomal protein S2, bacterial type; This model describes the bacterial, ribosomal, and chloroplast forms of ribosomal protein S2. TIGR01012 describes the archaeal and cytosolic forms. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130084  Cd Length: 225  Bit Score: 307.32  E-value: 3.29e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502    9 LLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVVAEKAQSVN 88
Cdd:TIGR01011   7 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEEAERCG 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   89 MPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSALFVIDVMK 168
Cdd:TIGR01011  87 MFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVK 166
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 490434502  169 ENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEE 227
Cdd:TIGR01011 167 EKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQE 225
RPS2 cd01425
Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, ...
9-223 4.68e-89

Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones.


Pssm-ID: 100106  Cd Length: 193  Bit Score: 262.90  E-value: 4.68e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   9 LLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVVAEKAQSVN 88
Cdd:cd01425    1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  89 MPYVIERWPGGMLTNFPTIRKAVKKMATIDKltndgtysnlskrevlqisrqrAKLDKTLGSIADLTRLPSALFVIDVMK 168
Cdd:cd01425   81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK 138
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 490434502 169 ENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIE 223
Cdd:cd01425  139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193
rps2 CHL00067
ribosomal protein S2
1-224 1.66e-82

ribosomal protein S2


Pssm-ID: 177007  Cd Length: 230  Bit Score: 247.45  E-value: 1.66e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   1 MSRTNFDTLLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVV 80
Cdd:CHL00067   5 MWNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  81 AEKAQSVNMPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSA 160
Cdd:CHL00067  85 ASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDI 164
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490434502 161 LFVIDVMKENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEG 224
Cdd:CHL00067 165 VIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEG 228
rpsB PRK12311
30S ribosomal protein S2;
9-243 1.69e-79

30S ribosomal protein S2;


Pssm-ID: 183428 [Multi-domain]  Cd Length: 326  Bit Score: 243.14  E-value: 1.69e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   9 LLEAGCHFGHLKRKWNPAMAPYIFMERNGIHIIDLHKTVAKVDEAAEALKQIAKSGKKVLFVATKKQAKQVVAEKAQSVN 88
Cdd:PRK12311   4 LLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAKRSA 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  89 MPYVIERWPGGMLTNFPTIRKAVKKMATIDKLTNDGTYSNLSKREVLQISRQRAKLDKTLGSIADLTRLPSALFVIDVMK 168
Cdd:PRK12311  84 QYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNK 163
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490434502 169 ENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVILDACCAAMIEGLEERKAEK-IDMEAAGEAPA 243
Cdd:PRK12311 164 EDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGISRAQGDLgIDIGASEAPLA 239
uS2_euk_arch TIGR01012
ribosomal protein uS2, eukaryotic/archaeal form; This model describes the ribosomal protein of ...
7-213 4.16e-12

ribosomal protein uS2, eukaryotic/archaeal form; This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273394  Cd Length: 196  Bit Score: 63.60  E-value: 4.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502    7 DTLLEAGCHFGhlKRKWNPAMAPYIFMERN-GIHIIDLHKTVAKVDEAAEALKQIAKSgkKVLFVATKKQAKQVVAEKAQ 85
Cdd:TIGR01012   7 DMYLAAGVHIG--TQNKTFDMEKFIYKVRQdGLYVLDLRKTDERLRVAAKFLVAIEPQ--DILVVSARIYGQKPVLKFAK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   86 SVNMPYVIERWPGGMLTNfptirkavkkmatidkltndGTYSNLSKrevlqisrqrakldktlgsiadltrlPSALFVID 165
Cdd:TIGR01012  83 VTGARAIAGRFTPGTFTN--------------------PAQKSFRE--------------------------PRVLIVTD 116
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 490434502  166 VMKENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVI 213
Cdd:TIGR01012 117 PRADHQAVKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRRSLALI 164
PTZ00254 PTZ00254
40S ribosomal protein SA; Provisional
9-213 1.53e-10

40S ribosomal protein SA; Provisional


Pssm-ID: 240331 [Multi-domain]  Cd Length: 249  Bit Score: 60.07  E-value: 1.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502   9 LLEAGCHFGhlKRKWNPAMAPYIFMER-NGIHIIDLHKTVAKVDEAAEALKQIaKSGKKVLFVATKKQAKQVVAEKAQSV 87
Cdd:PTZ00254  18 MLACKCHIG--TKNLENAMKKYVYKRTkEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAVLKFAQYT 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490434502  88 NMPYVIERWPGGMLTNfptirkavkkmatidkltndgtysnlskrevlQISRQRAKldktlgsiadltrlPSALFVIDVM 167
Cdd:PTZ00254  95 GASAIAGRFTPGTFTN--------------------------------QIQKKFME--------------PRLLIVTDPR 128
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 490434502 168 KENIAVREANRLGIPVFGIVDTNSDPSNVDFVIPANDDATKSIEVI 213
Cdd:PTZ00254 129 TDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALM 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH