NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490429345|ref|WP_004301484|]
View 

MULTISPECIES: DUF5004 domain-containing protein [Bacteroides]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF5004 super family cl24833
Domain of unknown function (DUF5004); This small family of proteins is functionally ...
 34-146 5.55e-33

Domain of unknown function (DUF5004); This small family of proteins is functionally uncharacterized. This family is found in bacteroides. Proteins in this family are typically around 150 amino acids in length.


The actual alignment was detected with superfamily member pfam16395:

Pssm-ID: 406727  Cd Length: 145  Bit Score: 113.46  E-value: 5.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490429345   34 TEQVKDISGTWQLTTVSRNSN-------DITETMDFSQFQIDLKKDGKYTIENY-----LPFVVRHNGTWKVDDIYYPFR 101
Cdd:pfam16395  17 SESEKKLSGKWQLTGLTRNDEldltdgtDLFEQFDFKDFSYTFNSDRSYTIESYsvvgdCPFVVAKSGTWSLDDPIYPLS 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 490429345  102 LYFTEDGATEQASTDILFPITNGERNIV----ITHSPGCGSNTYTYVFK 146
Cdd:pfam16395  97 LTQTAELAKKAVSSEFTFPVVPGERNVLelkdVTGSPGCASNSYQYSLE 145
 
Name Accession Description Interval E-value
DUF5004 pfam16395
Domain of unknown function (DUF5004); This small family of proteins is functionally ...
 34-146 5.55e-33

Domain of unknown function (DUF5004); This small family of proteins is functionally uncharacterized. This family is found in bacteroides. Proteins in this family are typically around 150 amino acids in length.


Pssm-ID: 406727  Cd Length: 145  Bit Score: 113.46  E-value: 5.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490429345   34 TEQVKDISGTWQLTTVSRNSN-------DITETMDFSQFQIDLKKDGKYTIENY-----LPFVVRHNGTWKVDDIYYPFR 101
Cdd:pfam16395  17 SESEKKLSGKWQLTGLTRNDEldltdgtDLFEQFDFKDFSYTFNSDRSYTIESYsvvgdCPFVVAKSGTWSLDDPIYPLS 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 490429345  102 LYFTEDGATEQASTDILFPITNGERNIV----ITHSPGCGSNTYTYVFK 146
Cdd:pfam16395  97 LTQTAELAKKAVSSEFTFPVVPGERNVLelkdVTGSPGCASNSYQYSLE 145
 
Name Accession Description Interval E-value
DUF5004 pfam16395
Domain of unknown function (DUF5004); This small family of proteins is functionally ...
 34-146 5.55e-33

Domain of unknown function (DUF5004); This small family of proteins is functionally uncharacterized. This family is found in bacteroides. Proteins in this family are typically around 150 amino acids in length.


Pssm-ID: 406727  Cd Length: 145  Bit Score: 113.46  E-value: 5.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490429345   34 TEQVKDISGTWQLTTVSRNSN-------DITETMDFSQFQIDLKKDGKYTIENY-----LPFVVRHNGTWKVDDIYYPFR 101
Cdd:pfam16395  17 SESEKKLSGKWQLTGLTRNDEldltdgtDLFEQFDFKDFSYTFNSDRSYTIESYsvvgdCPFVVAKSGTWSLDDPIYPLS 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 490429345  102 LYFTEDGATEQASTDILFPITNGERNIV----ITHSPGCGSNTYTYVFK 146
Cdd:pfam16395  97 LTQTAELAKKAVSSEFTFPVVPGERNVLelkdVTGSPGCASNSYQYSLE 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH