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Conserved domains on  [gi|490365514|ref|WP_004245178|]
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MULTISPECIES: hydrogenase maturation factor HybG [Proteus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10409 super family cl00394
HypC/HybG/HupF family hydrogenase formation chaperone;
1-81 1.44e-41

HypC/HybG/HupF family hydrogenase formation chaperone;


The actual alignment was detected with superfamily member PRK10413:

Pssm-ID: 469758  Cd Length: 82  Bit Score: 130.63  E-value: 1.44e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365514  1 MCLGVPAKIVEVGDDVHQLAYAEVSGVKRAVNISMVCEGDPSELLDKWVLIHVGFAMSILDEQEAQDTLDAL-QHVYGVT 79
Cdd:PRK10413  1 MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFAMSIIDEDEAKATLDALrQMEYDIT 80


                ..
gi 490365514 80 LE 81
Cdd:PRK10413 81 SA 82
 
Name Accession Description Interval E-value
PRK10413 PRK10413
hydrogenase maturation factor HybG;
1-81 1.44e-41

hydrogenase maturation factor HybG;


Pssm-ID: 182438  Cd Length: 82  Bit Score: 130.63  E-value: 1.44e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365514  1 MCLGVPAKIVEVGDDVHQLAYAEVSGVKRAVNISMVCEGDPSELLDKWVLIHVGFAMSILDEQEAQDTLDAL-QHVYGVT 79
Cdd:PRK10413  1 MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFAMSIIDEDEAKATLDALrQMEYDIT 80


                ..
gi 490365514 80 LE 81
Cdd:PRK10413 81 SA 82
HypC COG0298
Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein ...
 1-84 2.33e-24

Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440067  Cd Length: 78  Bit Score: 87.12  E-value: 2.33e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365514  1 MCLGVPAKIVEVGDDvhQLAYAEVSGVKRAVNISMVCE---GDpselldkWVLIHVGFAMSILDEQEAQDTLDALQHVYG 77
Cdd:COG0298   1 MCLAIPGKVVEILDG--DTALVDVGGVRREVSLALVPEvkvGD-------YVLVHVGFAIEKIDEEEAEETLELLEELGA 71


                ....*..
gi 490365514 78 VTLEEAD 84
Cdd:COG0298  72 ALEEVDA 78
HupF_HypC pfam01455
HupF/HypC family;
2-72 1.61e-21

HupF/HypC family;


Pssm-ID: 460218  Cd Length: 64  Bit Score: 79.33  E-value: 1.61e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490365514   2 CLGVPAKIVEVGDDvhqLAYAEVSGVKRAVNISMVCE---GDpselldkWVLIHVGFAMSILDEQEAQDTLDAL 72
Cdd:pfam01455  1 CLAIPGKVVEIDDE---MAVVDFGGVRREVSLALVPEvkvGD-------YVLVHAGFAIEKIDEEEAEETLALL 64
hypC_hupF TIGR00074
hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for ...
 1-73 3.12e-17

hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for a hydrogenase large subunit, holding the precursor form before metallocenter nickel incorporation. [SS 12/31/03] More recently proposed additional function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. . Added metallochaperone and protein mod GO terms. [Protein fate, Protein folding and stabilization, Protein fate, Protein modification and repair]


Pssm-ID: 129184  Cd Length: 76  Bit Score: 68.94  E-value: 3.12e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490365514   1 MCLGVPAKIVEVGDDVhqlAYAEVSGVKRAVNISMVCEGDPSelldKWVLIHVGFAMSILDEQEAQDTLDALQ 73
Cdd:TIGR00074  1 MCIAIPGQVVEIDENI---ALVEFCGIKRDVSLDLVGEVKVG----DYVLVHVGFAISVLDEEEARETLDALQ 66
 
Name Accession Description Interval E-value
PRK10413 PRK10413
hydrogenase maturation factor HybG;
1-81 1.44e-41

hydrogenase maturation factor HybG;


Pssm-ID: 182438  Cd Length: 82  Bit Score: 130.63  E-value: 1.44e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365514  1 MCLGVPAKIVEVGDDVHQLAYAEVSGVKRAVNISMVCEGDPSELLDKWVLIHVGFAMSILDEQEAQDTLDAL-QHVYGVT 79
Cdd:PRK10413  1 MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFAMSIIDEDEAKATLDALrQMEYDIT 80


                ..
gi 490365514 80 LE 81
Cdd:PRK10413 81 SA 82
HypC COG0298
Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein ...
 1-84 2.33e-24

Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440067  Cd Length: 78  Bit Score: 87.12  E-value: 2.33e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365514  1 MCLGVPAKIVEVGDDvhQLAYAEVSGVKRAVNISMVCE---GDpselldkWVLIHVGFAMSILDEQEAQDTLDALQHVYG 77
Cdd:COG0298   1 MCLAIPGKVVEILDG--DTALVDVGGVRREVSLALVPEvkvGD-------YVLVHVGFAIEKIDEEEAEETLELLEELGA 71


                ....*..
gi 490365514 78 VTLEEAD 84
Cdd:COG0298  72 ALEEVDA 78
HupF_HypC pfam01455
HupF/HypC family;
2-72 1.61e-21

HupF/HypC family;


Pssm-ID: 460218  Cd Length: 64  Bit Score: 79.33  E-value: 1.61e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490365514   2 CLGVPAKIVEVGDDvhqLAYAEVSGVKRAVNISMVCE---GDpselldkWVLIHVGFAMSILDEQEAQDTLDAL 72
Cdd:pfam01455  1 CLAIPGKVVEIDDE---MAVVDFGGVRREVSLALVPEvkvGD-------YVLVHAGFAIEKIDEEEAEETLALL 64
PRK10409 PRK10409
HypC/HybG/HupF family hydrogenase formation chaperone;
1-78 7.63e-20

HypC/HybG/HupF family hydrogenase formation chaperone;


Pssm-ID: 182435  Cd Length: 90  Bit Score: 75.99  E-value: 7.63e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365514  1 MCLGVPAKIVEVGDDvhqLAYAEVSGVKRAVNISMV--CEGDPSELLDKWVLIHVGFAMSILDEQEAQDTLDALQHVYGV 78
Cdd:PRK10409  1 MCIGVPGQIRTIDGN---QAKVDVCGIQRDVDLTLVgsCDENGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDV 77
hypC_hupF TIGR00074
hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for ...
 1-73 3.12e-17

hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for a hydrogenase large subunit, holding the precursor form before metallocenter nickel incorporation. [SS 12/31/03] More recently proposed additional function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. . Added metallochaperone and protein mod GO terms. [Protein fate, Protein folding and stabilization, Protein fate, Protein modification and repair]


Pssm-ID: 129184  Cd Length: 76  Bit Score: 68.94  E-value: 3.12e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490365514   1 MCLGVPAKIVEVGDDVhqlAYAEVSGVKRAVNISMVCEGDPSelldKWVLIHVGFAMSILDEQEAQDTLDALQ 73
Cdd:TIGR00074  1 MCIAIPGQVVEIDENI---ALVEFCGIKRDVSLDLVGEVKVG----DYVLVHVGFAISVLDEEEARETLDALQ 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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