|
Name |
Accession |
Description |
Interval |
E-value |
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-257 |
1.21e-162 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 454.15 E-value: 1.21e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY 78
Cdd:COG1135 1 MIELENLSKTFPTKGGPvtALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSL 238
Cdd:COG1135 161 VLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRF 240
|
250 260
....*....|....*....|....*
gi 490280290 239 LHD------PQAEQEFLTRHGVQGR 257
Cdd:COG1135 241 LPTvlndelPEELLARLREAAGGGR 265
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-257 |
7.89e-142 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 401.49 E-value: 7.89e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY 78
Cdd:PRK11153 1 MIELKNISKVFPQGGRTihALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSL 238
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
|
250 260
....*....|....*....|....*
gi 490280290 239 LHD------PQAEQEFLTRHGVQGR 257
Cdd:PRK11153 241 IQStlhldlPEDYLARLQAEPTTGS 265
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-230 |
1.41e-141 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 396.57 E-value: 1.41e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGR--PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY 78
Cdd:cd03258 1 MIELKNVSKVFGDTGGkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
|
|
| ABC_MetN |
TIGR02314 |
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ... |
1-250 |
5.10e-104 |
|
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Pssm-ID: 131367 [Multi-domain] Cd Length: 343 Bit Score: 305.65 E-value: 5.10e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY 78
Cdd:TIGR02314 1 MIKLSNITKVFHQGTKTiqALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLR--- 235
Cdd:TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAqkf 240
|
250
....*....|....*...
gi 490280290 236 -QSLLH--DPQAEQEFLT 250
Cdd:TIGR02314 241 iRSTLHlsIPEDYQERLQ 258
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-236 |
3.60e-94 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 276.88 E-value: 3.60e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqLNKAALRDYRL 80
Cdd:COG1126 1 MIEIENLHKSFGDL--EVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLT-DSKKDINKLRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAV-PLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:COG1126 78 KVGMVFQQFNLFPHLTVLENVTLaPIKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKV 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWS-RLRQ 236
Cdd:COG1126 158 MLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHeRTRA 234
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-219 |
7.11e-92 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 270.38 E-value: 7.11e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYA--GTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY 78
Cdd:COG1136 4 LLELRNLTKSYGtgEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRT-GMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:COG1136 84 RRRHiGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKtICDHAALLEQGEIVE 219
Cdd:COG1136 164 KLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAA-RADRVIRLRDGRIVS 224
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-239 |
3.30e-90 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 276.01 E-value: 3.30e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGR---PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRD 77
Cdd:COG1123 260 LLEVRNLSKRYPVRGKggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 YRLRTGMIFQH----FNllHARTVADNVAVPLEIAGV-PRAAREARVRELLALVDLSEKAA-AFPSQLSGGQKQRVGIAR 151
Cdd:COG1123 340 LRRRVQMVFQDpyssLN--PRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLPPDLAdRYPHELSGGQRQRVAIAR 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 152 ALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPW 231
Cdd:COG1123 418 ALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQ 497
|
....*...
gi 490280290 232 SRLRQSLL 239
Cdd:COG1123 498 HPYTRALL 505
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-236 |
2.22e-89 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 264.53 E-value: 2.22e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRL 80
Cdd:COG1127 5 MIEVRNLTKSFGD--RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPL-EIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:COG1127 83 RIGMLFQGGALFDSLTVFENVAFPLrEHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEI 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQ 236
Cdd:COG1127 163 LLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASDDPWVRQ 239
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-217 |
1.20e-87 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 259.34 E-value: 1.20e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGR--PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYR 79
Cdd:cd03255 1 IELKNLSKTYGGGGEkvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 80 LRT-GMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:cd03255 81 RRHiGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKtICDHAALLEQGEI 217
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-222 |
3.20e-87 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 258.44 E-value: 3.20e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYaGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRL 80
Cdd:COG2884 1 MIRFENVSKRY-PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:COG2884 80 RIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGK 222
Cdd:COG2884 160 LADEPTGNLDPETSWEIMELLEEINRR-GTTVLIATHDLELVDRMPKRVLELEDGRLVRDEA 220
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-218 |
4.04e-83 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 249.20 E-value: 4.04e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRL 80
Cdd:COG3638 2 MLELRNLSKRYPG-GTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNV------AVPLEIAGVPRAARE--ARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARA 152
Cdd:COG3638 81 RIGMIFQQFNLVPRLSVLTNVlagrlgRTSTWRSLLGLFPPEdrERALEALERVGLADKAYQRADQLSGGQQQRVAIARA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:COG3638 161 LVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVV 226
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
5-230 |
2.41e-81 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 249.25 E-value: 2.41e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 5 EGLSKT--YAGTGR-PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLR 81
Cdd:COG4175 26 QGKSKDeiLEKTGQtVGVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTAGEVLIDGEDITKLSKKELRELRRK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 T-GMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:COG4175 106 KmSMVFQHFALLPHRTVLENVAFGLEIQGVPKAERRERAREALELVGLAGWEDSYPDELSGGMQQRVGLARALATDPDIL 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 161 LCDEATSALDP--------EttasvlalLADINQRLNLTIVLITHQL-EVVKtICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:COG4175 186 LMDEAFSALDPlirremqdE--------LLELQAKLKKTIVFITHDLdEALR-LGDRIAIMKDGRIVQIGTPEEILTNP 255
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-217 |
1.24e-80 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 241.66 E-value: 1.24e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlNKAALRDYRLR 81
Cdd:cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD-DKKNINELRQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAV-PLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:cd03262 78 VGMVFQQFNLFPHLTVLENITLaPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-230 |
2.19e-80 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 242.02 E-value: 2.19e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTY--AGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnKAALRDY 78
Cdd:COG1124 1 MLEVRNLSVSYgqGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVT---RRRRKAF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQH-FNLLHAR-TVADNVAVPLEIAGVPRaaREARVRELLALVDLSEKAAA-FPSQLSGGQKQRVGIARALAA 155
Cdd:COG1124 78 RRRVQMVFQDpYASLHPRhTVDRILAEPLRIHGLPD--REERIAELLEQVGLPPSFLDrYPHQLSGGQRQRVAIARALIL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 156 RPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:COG1124 156 EPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGP 230
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-227 |
3.63e-79 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 238.39 E-value: 3.63e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnKAALRDYRLR 81
Cdd:COG1122 1 IELENLSFSYPG-GTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDIT---KKNLRELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:COG1122 77 VGLVFQNpDDQLFAPTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVF 222
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-226 |
3.35e-78 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 236.31 E-value: 3.35e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYaGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLR 81
Cdd:cd03256 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPL--------EIAG-VPRAAREaRVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARA 152
Cdd:cd03256 80 IGMIFQQFNLIERLSVLENVLSGRlgrrstwrSLFGlFPKEEKQ-RALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-236 |
5.97e-77 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 232.78 E-value: 5.97e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLR 81
Cdd:cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPL-EIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:cd03261 79 MGMLFQSGALFDSLTVFENVAFPLrEHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQ 236
Cdd:cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQ 234
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-200 |
1.07e-76 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 233.06 E-value: 1.07e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTY--AGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrdy 78
Cdd:COG1116 7 ALELRGVSKRFptGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGP------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:COG1116 81 --DRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLE 200
Cdd:COG1116 159 VLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVD 200
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-221 |
1.36e-76 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 231.63 E-value: 1.36e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY 78
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQH-FNLLHAR-TVADNVAVPLEIAGVPR--AAREARVRELLALVDLSEKAA-AFPSQLSGGQKQRVGIARAL 153
Cdd:cd03257 81 RKEIQMVFQDpMSSLNPRmTIGEQIAEPLRIHGKLSkkEARKEAVLLLLVGVGLPEEVLnRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 154 AARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-221 |
1.50e-75 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 233.45 E-value: 1.50e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnKAALRDyrl 80
Cdd:COG3842 5 ALELENVSKRYGDV--TALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGL-PPEKRN--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 rTGMIFQHFNLL-HaRTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:COG3842 79 -VGMVFQDYALFpH-LTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRV 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITH-QLEVVkTICDHAALLEQGEIVESG 221
Cdd:COG3842 157 LLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHdQEEAL-ALADRIAVMNDGRIEQVG 218
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-230 |
2.36e-75 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 230.22 E-value: 2.36e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 17 PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLRT-GMIFQHFNLLHAR 95
Cdd:cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKiSMVFQSFALLPHR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTA 175
Cdd:cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 176 SVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:cd03294 198 EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-227 |
1.33e-74 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 226.87 E-value: 1.33e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyrlR 81
Cdd:COG1131 1 IEVRGLTKRYGDK--TALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRR----R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:COG1131 75 IGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLI 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG1131 155 LDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELK 219
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-221 |
1.65e-74 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 225.86 E-value: 1.65e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrdYRLR 81
Cdd:cd03259 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP-----ERRN 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-226 |
1.90e-74 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 226.80 E-value: 1.90e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYaGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRL 80
Cdd:TIGR02315 1 MLEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPL-----EIAGV----PRAAREaRVRELLALVDLSEKAAAFPSQLSGGQKQRVGIAR 151
Cdd:TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRlgykpTWRSLlgrfSEEDKE-RALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 152 ALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-230 |
5.07e-74 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 228.40 E-value: 5.07e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRC-LNLLERP--TSGRILVNGQDITQLNKAAL 75
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAiLGLLPPPgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 76 RDYRLRT-GMIFQH-FNLLHAR-TVADNVAVPLEI-AGVPRAAREARVRELLALVDLSEKAA---AFPSQLSGGQKQRVG 148
Cdd:COG0444 81 RKIRGREiQMIFQDpMTSLNPVmTVGDQIAEPLRIhGGLSKAEARERAIELLERVGLPDPERrldRYPHELSGGMRQRVM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 149 IARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLV 228
Cdd:COG0444 161 IARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELFE 240
|
..
gi 490280290 229 TP 230
Cdd:COG0444 241 NP 242
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
4-216 |
2.42e-73 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 222.73 E-value: 2.42e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRLRTG 83
Cdd:cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS---LKELRRKVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNL-LHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLC 162
Cdd:cd03225 79 LVFQNPDDqFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490280290 163 DEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGE 216
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
2-221 |
5.54e-73 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 226.15 E-value: 5.54e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTG----RP-----ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNK 72
Cdd:COG4608 8 LEVRDLKKHFPVRGglfgRTvgvvkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 73 AALRDYRLRTGMIFQH-FNLLHAR-TVADNVAVPLEIAGV-PRAAREARVRELLALVDLSEKAAA-FPSQLSGGQKQRVG 148
Cdd:COG4608 88 RELRPLRRRMQMVFQDpYASLNPRmTVGDIIAEPLRIHGLaSKAERRERVAELLELVGLRPEHADrYPHEFSGGQRQRIG 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 149 IARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:COG4608 168 IARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIA 240
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-200 |
1.75e-70 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 215.80 E-value: 1.75e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrdyr 79
Cdd:cd03293 1 LEVRNVSKTYGGGGGAvtALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 80 lRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:cd03293 74 -DRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLE 200
Cdd:cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-230 |
5.02e-70 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 215.63 E-value: 5.02e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:cd03295 1 IEFENVTKRYGG-GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR---K 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEK--AAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-240 |
2.16e-67 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 208.79 E-value: 2.16e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlNKAALRDYRL 80
Cdd:PRK09493 1 MIEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDERLIRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAV-PLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK09493 78 EAGMVFQQFYLFPHLTALENVMFgPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWS-RLRQSL 238
Cdd:PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSqRLQEFL 236
|
..
gi 490280290 239 LH 240
Cdd:PRK09493 237 QH 238
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-216 |
2.19e-67 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 206.65 E-value: 2.19e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAaLRDYRLR 81
Cdd:cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE-LPPLRRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLeiagvpraarearvrellalvdlsekaaafpsqlSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03229 78 IGMVFQDFALFPHLTVLENIALGL----------------------------------SGGQQQRVALARALAMDPDVLL 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGE 216
Cdd:cd03229 124 LDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-222 |
3.95e-67 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 207.80 E-value: 3.95e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL-----ERPTSGRILVNGQDITQLNKAALR 76
Cdd:cd03260 1 IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIYDLDVDVLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 dYRLRTGMIFQHFNLLHArTVADNVAVPLEIAGV-PRAAREARVRELLALVDLSEKAA--AFPSQLSGGQKQRVGIARAL 153
Cdd:cd03260 79 -LRRRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIkLKEELDERVEEALRKAALWDEVKdrLHALGLSGGQQQRLCLARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 154 AARPEVLLCDEATSALDPETTASVLALLADINQRlnLTIVLITHQLEVVKTICDHAALLEQGEIVESGK 222
Cdd:cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-238 |
8.49e-67 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 207.73 E-value: 8.49e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQ----------L 70
Cdd:COG4598 8 ALEVRDLHKSFGD--LEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLkpdrdgelvpA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 71 NKAALRDYRLRTGMIFQHFNLLHARTVADNV-AVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGI 149
Cdd:COG4598 86 DRRQLQRIRTRLGMVFQSFNLWSHMTVLENViEAPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAAI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 150 ARALAARPEVLLCDEATSALDPETTASVLALLADINQ--RlnlTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG4598 166 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEegR---TMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVF 242
|
250
....*....|..
gi 490280290 228 VTPWS-RLRQSL 238
Cdd:COG4598 243 GNPKSeRLRQFL 254
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-230 |
1.66e-66 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 214.77 E-value: 1.66e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPT---SGRILVNGQDITQLNKAALRD 77
Cdd:COG1123 4 LLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 yrlRTGMIFQHF-NLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAAR 156
Cdd:COG1123 84 ---RIGMVFQDPmTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAP 234
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-255 |
2.12e-66 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 207.28 E-value: 2.12e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItqLNKAALRDYRLR 81
Cdd:TIGR04520 1 IEVENVSFSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDT--LDEENLWEIRKK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:TIGR04520 79 VGMVFQNpDNQFVGATVEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDII 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITHQL-EVVKtiCDHAALLEQGEIVESGKLADLLVTPwSRLRQSLL 239
Cdd:TIGR04520 159 ILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMeEAVL--ADRVIVMNKGKIVAEGTPREIFSQV-ELLKEIGL 235
|
250
....*....|....*...
gi 490280290 240 HDPQAEQ--EFLTRHGVQ 255
Cdd:TIGR04520 236 DVPFITElaKALKKRGIP 253
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-227 |
1.46e-65 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 207.69 E-value: 1.46e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqLNKAAlRDyRlR 81
Cdd:COG1118 3 IEVRNISKRFGS--FTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLF-TNLPP-RE-R-R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:COG1118 77 VGFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG1118 157 LDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVY 222
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-226 |
3.55e-64 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 204.15 E-value: 3.55e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnKAALRDyrl 80
Cdd:COG3839 3 SLELENVSKSYGGV--EALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDL-PPKDRN--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 rTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:COG3839 77 -IAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITH-QLEVVkTICDHAALLEQGEIVESGKLADL 226
Cdd:COG3839 156 LLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHdQVEAM-TLADRIAVMNDGRIQQVGTPEEL 221
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-217 |
1.05e-63 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 198.40 E-value: 1.05e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLR 81
Cdd:cd03292 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-246 |
3.02e-63 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 199.21 E-value: 3.02e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYA-GTG--RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY 78
Cdd:TIGR04521 1 IKLKNVSYIYQpGTPfeKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQhF--NLLHARTVADNVA-VPLEIaGVPRAAREARVRELLALVDLSEK-AAAFPSQLSGGQKQRVGIARALA 154
Cdd:TIGR04521 81 RKKVGLVFQ-FpeHQLFEETVYKDIAfGPKNL-GLSEEEAEERVKEALELVGLDEEyLERSPFELSGGQMRRVAIAGVLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 155 ARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPwSRL 234
Cdd:TIGR04521 159 MEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDV-DEL 237
|
250
....*....|..
gi 490280290 235 RQSLLHDPQAEQ 246
Cdd:TIGR04521 238 EKIGLDVPEITE 249
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-238 |
4.13e-63 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 198.05 E-value: 4.13e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNgqDIT-------QLNKA 73
Cdd:PRK11264 3 AIEVKNLVKKF--HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG--DITidtarslSQQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 74 ALRDYRLRTGMIFQHFNLLHARTVADNVAV-PLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARA 152
Cdd:PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEgPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPW- 231
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQq 237
|
....*..
gi 490280290 232 SRLRQSL 238
Cdd:PRK11264 238 PRTRQFL 244
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-230 |
3.05e-62 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 195.62 E-value: 3.05e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDI---TQLNKAALRDY 78
Cdd:COG4161 3 IQLKNINCFYGSH--QALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsQKPSEKAIRLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHARTVADN-VAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:COG4161 81 RQKVGMVFQQYNLWPHLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQrLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKlADLLVTP 230
Cdd:COG4161 161 QVLLFDEPTAALDPEITAQVVEIIRELSQ-TGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQP 231
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-221 |
5.53e-62 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 195.23 E-value: 5.53e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQ--DITQ-LNKAALRDY 78
Cdd:PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKtPSDKAIREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHARTVADN-VAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNlIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQrLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-233 |
6.73e-62 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 194.38 E-value: 6.73e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrdYRLR 81
Cdd:cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-----HKRP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSR 233
Cdd:cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANR 225
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
18-230 |
1.87e-60 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 199.53 E-value: 1.87e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRC-LNLLerPTSGRILVNGQDITQLNKAALRDYRLRTGMIFQH-FNLLHAR 95
Cdd:COG4172 301 AVDGVSLTLRRGETLGLVGESGSGKSTLGLAlLRLI--PSEGEIRFDGQDLDGLSRRALRPLRRRMQVVFQDpFGSLSPR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 -TVADNVAVPLEI--AGVPRAAREARVRELLALVDLSEKAAA-FPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDP 171
Cdd:COG4172 379 mTVGQIIAEGLRVhgPGLSAAERRARVAEALEEVGLDPAARHrYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDV 458
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 172 ETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:COG4172 459 SVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAP 517
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-219 |
6.69e-60 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 189.18 E-value: 6.69e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLN---KAAL 75
Cdd:COG4181 8 IIELRGLTKTVGTGAGEltILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDedaRARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 76 RdyRLRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAarEARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAA 155
Cdd:COG4181 88 R--ARHVGFVFQSFQLLPTLTALENVMLPLELAGRRDA--RARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFAT 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 156 RPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVE 219
Cdd:COG4181 164 EPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVE 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-230 |
1.65e-57 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 191.44 E-value: 1.65e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGR--PALNDIALQIPKGAIYGILGRSGAGKS-TLIRCLNLLERP---TSGRILVNGQDITQLNKAA 74
Cdd:COG4172 6 LLSVEDLSVAFGQGGGtvEAVKGVSFDIAAGETLALVGESGSGKSvTALSILRLLPDPaahPSGSILFDGQDLLGLSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 75 LRDYR-LRTGMIFQH----FNLLHarTVADNVAVPLEI-AGVPRAAREARVRELLALVDLSE---KAAAFPSQLSGGQKQ 145
Cdd:COG4172 86 LRRIRgNRIAMIFQEpmtsLNPLH--TIGKQIAEVLRLhRGLSGAAARARALELLERVGIPDperRLDAYPHQLSGGQRQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 146 RVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLAD 225
Cdd:COG4172 164 RVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAE 243
|
....*
gi 490280290 226 LLVTP 230
Cdd:COG4172 244 LFAAP 248
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-217 |
2.35e-57 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 180.67 E-value: 2.35e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyrlR 81
Cdd:cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKR----R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVavpleiagvpraarearvrellalvdlsekaaafpsQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03230 75 IGYLPEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLI 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:cd03230 119 LDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-200 |
3.41e-57 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 183.52 E-value: 3.41e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTG--RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnKAALRdy 78
Cdd:COG4525 3 MLTVRHVSVRYPGGGqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG--PGADR-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlrtGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:COG4525 79 ----GVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLE 200
Cdd:COG4525 155 FLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVE 196
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-227 |
7.29e-57 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 193.13 E-value: 7.29e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:COG2274 474 IELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRR---Q 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHfNLLHARTVADNVAVpleiaGVPRAAREaRVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIA 150
Cdd:COG2274 551 IGVVLQD-VFLFSGTIRENITL-----GDPDATDE-EIIEAARLAGLHDFIEALPmgydtvvgeggSNLSGGQRQRLAIA 623
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKtICDHAALLEQGEIVESGKLADLL 227
Cdd:COG2274 624 RALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIR-LADRIIVLDKGRIVEDGTHEELL 697
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-227 |
3.91e-56 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 179.57 E-value: 3.91e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrpALNdIALQIPKGAIYGILGRSGAGKSTLircLNLL---ERPTSGRILVNGQDITQLNKAAlrd 77
Cdd:COG3840 1 MLRLDDLTYRYGDF---PLR-FDLTIAAGERVAILGPSGAGKSTL---LNLIagfLPPDSGRILWNGQDLTALPPAE--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 yRLRTgMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALA-AR 156
Cdd:COG3840 71 -RPVS-MLFQENNLFPHLTVAQNIGLGLRPGLKLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVrKR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 157 PeVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG3840 149 P-ILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALL 218
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
19-238 |
4.32e-56 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 180.55 E-value: 4.32e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDIT-------QL---NKAALRDYRLRTGMIFQH 88
Cdd:PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgQLkvaDKNQLRLLRTRLTMVFQH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 89 FNLLHARTVADNV-AVPLEIAGVPRAAREARVRELLALVDLSEKA-AAFPSQLSGGQKQRVGIARALAARPEVLLCDEAT 166
Cdd:PRK10619 101 FNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 167 SALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWS-RLRQSL 238
Cdd:PRK10619 181 SALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSpRLQQFL 252
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-230 |
5.11e-56 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 179.84 E-value: 5.11e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRLr 81
Cdd:cd03296 3 IEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP---VQERNV- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 tGMIFQHFNLLHARTVADNVAVPLEI----AGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:cd03296 77 -GFVFQHYALFRHMTVFDNVAFGLRVkprsERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-230 |
1.13e-55 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 179.46 E-value: 1.13e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL--ERP---TSGRILVNGQDI--TQLNKAA 74
Cdd:COG1117 12 IEVRNLNVYYGD--KQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPgarVEGEILLDGEDIydPDVDVVE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 75 LRdyrLRTGMIFQHFNLLhARTVADNVAVPLEIAGV-PRAAREARVRELL---ALVD-----LSEKAAAfpsqLSGGQKQ 145
Cdd:COG1117 90 LR---RRVGMVFQKPNPF-PKSIYDNVAYGLRLHGIkSKSELDEIVEESLrkaALWDevkdrLKKSALG----LSGGQQQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 146 RVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLAD 225
Cdd:COG1117 162 RLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKK--DYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQ 239
|
....*
gi 490280290 226 LLVTP 230
Cdd:COG1117 240 IFTNP 244
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-227 |
1.53e-55 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 178.51 E-value: 1.53e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyrl 80
Cdd:COG4555 1 MIEVENLSKKYGK--VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARR---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:COG4555 75 QIGVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG4555 155 LLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELR 220
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-227 |
2.94e-55 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 178.31 E-value: 2.94e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyRL 80
Cdd:COG1120 1 MLEAENLSVGYGG--RPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELA--RR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RtGMIFQHFNLLHARTVADNVAV---P-LEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAAR 156
Cdd:COG1120 77 I-AYVPQEPPAPFGLTVRELVALgryPhLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQE 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG1120 156 PPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-225 |
3.29e-55 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 178.31 E-value: 3.29e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnkaALRDYRL 80
Cdd:COG0411 4 LLEVRGLTKRFGG--LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDIT-----GLPPHRI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 -RTGMI--FQHFNLLHARTVADNVAVPLE----------IAGVPRAARE-----ARVRELLALVDLSEKAAAFPSQLSGG 142
Cdd:COG0411 77 aRLGIArtFQNPRLFPELTVLENVLVAAHarlgrgllaaLLRLPRARREerearERAEELLERVGLADRADEPAGNLSYG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 143 QKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGK 222
Cdd:COG0411 157 QQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGT 236
|
...
gi 490280290 223 LAD 225
Cdd:COG0411 237 PAE 239
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-221 |
7.67e-55 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 177.90 E-value: 7.67e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQditQLNKAALRDYRLR 81
Cdd:PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM---VLSEETVWDVRRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK13635 83 VGMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITHQL-EVVKTicDHAALLEQGEIVESG 221
Cdd:PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLdEAAQA--DRVIVMNKGEILEEG 222
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-217 |
7.92e-55 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 175.77 E-value: 7.92e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSktYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRLR 81
Cdd:COG4619 1 LELEGLS--FRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMP---PPEWRRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHArTVADNVAVPLEIAGvpRAAREARVRELLALVDLSEKAAAFP-SQLSGGQKQRVGIARALAARPEVL 160
Cdd:COG4619 76 VAYVPQEPALWGG-TVRDNLPFPFQLRE--RKFDRERALELLERLGLPPDILDKPvERLSGGERQRLALIRALLLQPDVL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:COG4619 153 LLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-227 |
3.82e-53 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 181.13 E-value: 3.82e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIrclNLLER---PTSGRILVNGQDITQLNKAALRDy 78
Cdd:COG1132 340 IEFENVSFSYPG-DRPVLKDISLTIPPGETVALVGPSGSGKSTLV---NLLLRfydPTSGRILIDGVDIRDLTLESLRR- 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlRTGMIFQHFNLLHaRTVADNVAVpleiaGVPRAAREaRVRELLALVDLSEKAAAFP-----------SQLSGGQKQRV 147
Cdd:COG1132 415 --QIGVVPQDTFLFS-GTIRENIRY-----GRPDATDE-EVEEAAKAAQAHEFIEALPdgydtvvgergVNLSGGQRQRI 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL 227
Cdd:COG1132 486 AIARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGTHEELL 562
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-237 |
1.46e-52 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 171.79 E-value: 1.46e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTG-------RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKA 73
Cdd:PRK10419 3 LLNVSGLSHHYAHGGlsgkhqhQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 74 ALRDYRLRTGMIFQH----FNLLHarTVADNVAVPLE-IAGVPRAAREARVRELLALVDLS-EKAAAFPSQLSGGQKQRV 147
Cdd:PRK10419 83 QRKAFRRDIQMVFQDsisaVNPRK--TVREIIREPLRhLLSLDKAERLARASEMLRAVDLDdSVLDKRPPQLSGGQLQRV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240
|
250
....*....|..
gi 490280290 228 V--TPWSRLRQS 237
Cdd:PRK10419 241 TfsSPAGRVLQN 252
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-216 |
2.75e-52 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 167.95 E-value: 2.75e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK---N 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHArTVADNVavpleiagvpraarearvrellalvdlsekaaafpsqLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03228 78 IAYVPQDPFLFSG-TIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILI 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 162 CDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKtICDHAALLEQGE 216
Cdd:cd03228 120 LDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-225 |
6.45e-52 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 169.15 E-value: 6.45e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnKAALRdYRLRTG 83
Cdd:cd03219 3 VRGLTKRFGGL--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL-PPHEI-ARLGIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNLLHARTVADNVAVPLEI--------AGVPRAAREAR--VRELLALVDLSEKAAAFPSQLSGGQKQRVGIARAL 153
Cdd:cd03219 79 RTFQIPRLFPELTVLENVMVAAQArtgsglllARARREEREARerAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 154 AARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLAD 225
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-226 |
6.73e-52 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 168.70 E-value: 6.73e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkaALRDYRLR 81
Cdd:cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR----EPREVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-227 |
1.21e-51 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 168.73 E-value: 1.21e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaalrdyRL 80
Cdd:COG1121 6 AIELENLTVSYGG--RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA--------RR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLlhAR----TVADNVA----VPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARA 152
Cdd:COG1121 76 RIGYVPQRAEV--DWdfpiTVRDVVLmgryGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGeIVESGKLADLL 227
Cdd:COG1121 154 LAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEEVL 226
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-221 |
2.69e-51 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 166.66 E-value: 2.69e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnKAALRDyrlr 81
Cdd:cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL-PPKDRD---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITH-QLEVVkTICDHAALLEQGEIVESG 221
Cdd:cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHdQVEAM-TMADRIAVMNDGQIQQIG 213
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-233 |
4.84e-51 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 170.26 E-value: 4.84e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalRDYRLr 81
Cdd:PRK10851 3 IEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA---RDRKV- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 tGMIFQHFNLLHARTVADNVAVPLEIagVPR------AAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAA 155
Cdd:PRK10851 77 -GFVFQHYALFRHMTVFDNIAFGLTV--LPRrerpnaAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 156 RPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSR 233
Cdd:PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATR 231
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-234 |
1.85e-49 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 166.93 E-value: 1.85e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrdYRL 80
Cdd:PRK11607 19 LLEIRNLTKSF--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP-----YQR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRL 234
Cdd:PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-221 |
8.44e-49 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 160.39 E-value: 8.44e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrdyrlRTG 83
Cdd:cd03235 2 VEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERK--------RIG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNLLHAR--TVADNVAVPL----EIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:cd03235 72 YVPQRRSIDRDFpiSVRDVVLMGLyghkGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEqGEIVESG 221
Cdd:cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLN-RTVVASG 213
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-226 |
1.45e-48 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 159.98 E-value: 1.45e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyrlR 81
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQ----S 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 162 CDEATSALDPETTASVLALLADInqRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:cd03263 157 LDEPTSGLDPASRRAIWDLILEV--RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-221 |
1.61e-48 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 159.67 E-value: 1.61e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGaIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAalrdYRLR 81
Cdd:cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK----LRRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 162 CDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03264 154 VDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-227 |
3.69e-48 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 167.24 E-value: 3.69e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:COG4988 337 IELEDVSFSYPG-GRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRR---Q 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHArTVADNVAVpleiaGVPRAArEARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIA 150
Cdd:COG4988 413 IAWVPQNPYLFAG-TIRENLRL-----GRPDAS-DEELEAALEAAGLDEFVAALPdgldtplgeggRGLSGGQAQRLALA 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKtICDHAALLEQGEIVESGKLADLL 227
Cdd:COG4988 486 RALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLA-QADRILVLDDGRIVEQGTHEELL 559
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-218 |
9.73e-48 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 158.11 E-value: 9.73e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRL 80
Cdd:PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 161 LCDEATSALDPETTASVLALLADINqRLNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:PRK10908 160 LADEPTGNLDDALSEGILRLFEEFN-RVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
18-239 |
1.85e-47 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 160.52 E-value: 1.85e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLRTGMIFQH-FNLLHAR- 95
Cdd:PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNpYGSLNPRk 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEI-AGVPRAAREARVRELLALVDL-SEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPET 173
Cdd:PRK11308 110 KVGQILEEPLLInTSLSAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 174 TASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSLL 239
Cdd:PRK11308 190 QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALL 255
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-254 |
2.15e-47 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 158.38 E-value: 2.15e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRL 80
Cdd:PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN---FEKLRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK13648 84 HIGIVFQNpDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQL-EVVKTicDHAALLEQGEIVESGKLADL-----------L 227
Cdd:PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLsEAMEA--DHVIVMNKGTVYKEGTPTEIfdhaeeltrigL 241
|
250 260
....*....|....*....|....*...
gi 490280290 228 VTPWS-RLRQSLLHDPqaeqEFLTRHGV 254
Cdd:PRK13648 242 DLPFPiKINQMLGHQT----SFLTYEGL 265
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
19-167 |
2.93e-47 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 154.34 E-value: 2.93e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRLRTGMIFQHFNLLHARTVA 98
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE---RKSLRKEIGYVFQDPQLFPRLTVR 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 99 DNVAVPLEIAGVPRAAREARVRELLALVDLSEKAA----AFPSQLSGGQKQRVGIARALAARPEVLLCDEATS 167
Cdd:pfam00005 78 ENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADrpvgERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-216 |
3.13e-47 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 154.32 E-value: 3.13e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 3 TIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlRT 82
Cdd:cd00267 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR---RI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 83 GMIFQhfnllhartvadnvavpleiagvpraarearvrellalvdlsekaaafpsqLSGGQKQRVGIARALAARPEVLLC 162
Cdd:cd00267 76 GYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490280290 163 DEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGE 216
Cdd:cd00267 105 DEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-221 |
8.30e-47 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 155.07 E-value: 8.30e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlNKAALRdyrlR 81
Cdd:cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK-NIEALR----R 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVpraaREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03268 150 LDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-221 |
8.99e-47 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 154.13 E-value: 8.99e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 3 TIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALrdyrlrt 82
Cdd:cd03214 1 EVENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKEL------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 83 gmifqhfnllhartvADNVAVpleiagVPRAarearvrelLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLC 162
Cdd:cd03214 72 ---------------ARKIAY------VPQA---------LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 163 DEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-221 |
1.05e-46 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 159.73 E-value: 1.05e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnKAALRDyrLR 81
Cdd:PRK09452 15 VELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV-PAENRH--VN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TgmIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK09452 90 T--VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-221 |
1.46e-46 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 156.79 E-value: 1.46e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYA----GTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaaLR 76
Cdd:PRK13633 4 MIKCKNVSYKYEsneeSTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN--LW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAA 155
Cdd:PRK13633 82 DIRNKAGMVFQNpDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 156 RPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQL-EVVKTicDHAALLEQGEIVESG 221
Cdd:PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMeEAVEA--DRIIVMDSGKVVMEG 226
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-226 |
1.50e-46 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 156.88 E-value: 1.50e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTS---GRILVNGqdiTQLNKAALRDY 78
Cdd:PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDG---ITLTAKTVWDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:PRK13640 83 REKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVkTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEI 230
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-200 |
1.76e-46 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 155.63 E-value: 1.76e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlNKAALRdyrl 80
Cdd:PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE--GPGAER---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 rtGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK11248 73 --GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLE 200
Cdd:PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
21-236 |
1.96e-46 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 158.34 E-value: 1.96e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNG---QDITQlnKAALRDYRLRTGMIFQHFNLLHARTV 97
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlQDSAR--GIFLPPHRRRIGYVFQEARLFPHLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 ADNvavpLE--IAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTA 175
Cdd:COG4148 95 RGN----LLygRKRAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 176 SVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL----VTPWSRLRQ 236
Cdd:COG4148 171 EILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLsrpdLLPLAGGEE 235
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
18-230 |
2.09e-46 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 159.43 E-value: 2.09e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLRT-GMIFQHFNLLHART 96
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKiAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 97 VADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTAS 176
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490280290 177 VLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-242 |
5.28e-46 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 155.27 E-value: 5.28e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTY-AGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYR 79
Cdd:PRK13650 4 IIEVKNLTFKYkEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN---VWDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 80 LRTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:PRK13650 81 HKIGMVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVkTICDHAALLEQGEiVESGKLADLLVTPWSRLRQSL 238
Cdd:PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQ-VESTSTPRELFSRGNDLLQLG 238
|
....
gi 490280290 239 LHDP 242
Cdd:PRK13650 239 LDIP 242
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-226 |
7.91e-46 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 159.80 E-value: 7.91e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLN-KAALrdyR 79
Cdd:COG1129 4 LLEMRGISKSFGGV--KALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSpRDAQ---A 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 80 LRTGMIFQHFNLLHARTVADNVAVPLEIAG---VPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAAR 156
Cdd:COG1129 79 AGIAIIHQELNLVPNLSVAENIFLGREPRRgglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:COG1129 159 ARVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
2-221 |
9.31e-46 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 154.79 E-value: 9.31e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTY-AGT--GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDIT-QLNKAALRD 77
Cdd:PRK13634 3 ITFQKVEHRYqYKTpfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITaGKKNKKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 YRLRTGMIFQhF--NLLHARTVADNVAV-PLEIaGVPRAAREARVRELLALVDLSEKA-AAFPSQLSGGQKQRVGIARAL 153
Cdd:PRK13634 83 LRKKVGIVFQ-FpeHQLFEETVEKDICFgPMNF-GVSEEDAKQKAREMIELVGLPEELlARSPFELSGGQMRRVAIAGVL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 154 AARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-230 |
1.06e-45 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 160.70 E-value: 1.06e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLircLNLLER---PTSGRILVNGQDITQLNKAALRDy 78
Cdd:COG4987 334 LELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTL---LALLLRfldPQSGSITLGGVDLRDLDEDDLRR- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlRTGMIFQHFNLLHArTVADNVAVpleiaGVPRAArEARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRV 147
Cdd:COG4987 410 --RIAVVPQRPHLFDT-TLRENLRL-----ARPDAT-DEELWAALERVGLGDWLAALPdgldtwlgeggRRLSGGERRRL 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVkTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG4987 481 ALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGL-ERMDRILVLEDGRIVEQGTHEELL 557
|
...
gi 490280290 228 VTP 230
Cdd:COG4987 558 AQN 560
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-230 |
1.22e-45 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 152.87 E-value: 1.22e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYagtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAalrdyRLR 81
Cdd:cd03299 1 LKVENLSKDW---KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE-----KRD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
2-225 |
2.34e-45 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 153.66 E-value: 2.34e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTY-AGT--GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlNKAALRDY 78
Cdd:PRK13637 3 IKIENLTHIYmEGTpfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD-KKVKLSDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNL-LHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLS-----EKAaafPSQLSGGQKQRVGIARA 152
Cdd:PRK13637 82 RKKVGLVFQYPEYqLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDyedykDKS---PFELSGGQKRRVAIAGV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLAD 225
Cdd:PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
19-241 |
2.51e-45 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 155.65 E-value: 2.51e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlNKAALRDyrlrTGMIFQHFNLLHARTVA 98
Cdd:PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH-RSIQQRD----ICMVFQSYALFPHMSLG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 DNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVL 178
Cdd:PRK11432 97 ENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMR 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 179 ALLADINQRLNLTIVLITH-QLEVVkTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSLLHD 241
Cdd:PRK11432 177 EKIRELQQQFNITSLYVTHdQSEAF-AVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGD 239
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
21-221 |
3.87e-45 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 150.91 E-value: 3.87e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIyGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQ--DITQlNKAALRDYRLRTGMIFQHFNLLHARTVA 98
Cdd:cd03297 16 KIDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlFDSR-KKINLPPQQRKIGLVFQQYALFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 DNVAVPLEiaGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVL 178
Cdd:cd03297 94 ENLAFGLK--RKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 490280290 179 ALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03297 172 PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
4-246 |
1.93e-44 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 150.76 E-value: 1.93e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYAGTGRP-------ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQditqlnKAALR 76
Cdd:COG4167 7 VRNLSKTFKYRTGLfrrqqfeAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGH------KLEYG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRTG---MIFQHFNL-LHAR-TVADNVAVPLEIA-GVPRAAREARVRELLALVDLS-EKAAAFPSQLSGGQKQRVGI 149
Cdd:COG4167 81 DYKYRCKhirMIFQDPNTsLNPRlNIGQILEEPLRLNtDLTAEEREERIFATLRLVGLLpEHANFYPHMLSSGQKQRVAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 150 ARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVT 229
Cdd:COG4167 161 ARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTAEVFAN 240
|
250
....*....|....*..
gi 490280290 230 PWSRLRQSLLHDPQAEQ 246
Cdd:COG4167 241 PQHEVTKRLIESHFGEA 257
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-226 |
2.08e-44 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 151.41 E-value: 2.08e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkaalRDYR- 79
Cdd:COG4152 1 MLELKGLTKRFGD--KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDP------EDRRr 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 80 ---------LRTGMifqhfnllharTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIA 150
Cdd:COG4152 73 igylpeergLYPKM-----------KVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLI 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:COG4152 142 AALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-227 |
2.77e-44 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 150.53 E-value: 2.77e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRL 80
Cdd:PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN---LKEIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK13632 84 KIGIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVkTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEIL 230
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-225 |
6.97e-44 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 154.80 E-value: 6.97e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLN-KAALrdyR 79
Cdd:COG3845 5 ALELRGITKRFGGV--VANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSpRDAI---A 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 80 LRTGMIFQHFNLLHARTVADNVAVPLEIAG---VPRAAREARVRELLAL----VDLSEKAaafpSQLSGGQKQRVGIARA 152
Cdd:COG3845 80 LGIGMVHQHFMLVPNLTVAENIVLGLEPTKggrLDRKAARARIRELSERygldVDPDAKV----EDLSVGEQQRVEILKA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLadinQRL---NLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLAD 225
Cdd:COG3845 156 LYRGARILILDEPTAVLTPQEADELFEIL----RRLaaeGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAE 227
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-227 |
2.35e-43 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 146.99 E-value: 2.35e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIrclNLLER---PTSGRILVNGQDITQLnkaALRDY 78
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV---NLIPRfydVDSGRILIDGHDVRDY---TLASL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHArTVADNVAVpleiaGVPRAAREaRVRELLALVDLSEKAAAFP-----------SQLSGGQKQRV 147
Cdd:cd03251 75 RRQIGLVSQDVFLFND-TVAENIAY-----GRPGATRE-EVEEAARAANAHEFIMELPegydtvigergVKLSGGQRQRI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTIcDHAALLEQGEIVESGKLADLL 227
Cdd:cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA-DRIVVLEDGKIVERGTHEELL 224
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
19-201 |
4.58e-43 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 154.88 E-value: 4.58e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNK---AALRdyRLRTGMIFQHFNLLHAR 95
Cdd:PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAdalAQLR--REHFGFIFQRYHLLSHL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTA 175
Cdd:PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181
|
170 180
....*....|....*....|....*.
gi 490280290 176 SVLALLADINQRLNlTIVLITHQLEV 201
Cdd:PRK10535 182 EVMAILHQLRDRGH-TVIIVTHDPQV 206
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-230 |
1.85e-42 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 145.06 E-value: 1.85e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL-----ERPTSGRILVNGQDITQLNKAALR 76
Cdd:PRK14247 4 IEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIFKMDVIELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DyrlRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAARE--ARVRELLALVDLSEKAA----AFPSQLSGGQKQRVGIA 150
Cdd:PRK14247 82 R---RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKElqERVRWALEKAQLWDEVKdrldAPAGKLSGGQQQRLCIA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
19-203 |
1.88e-42 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 144.57 E-value: 1.88e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQL---NKAALRDYRLrtGMIFQHFNLLHAR 95
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLssaAKAELRNQKL--GFIYQFHHLLPDF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTA 175
Cdd:PRK11629 103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
|
170 180
....*....|....*....|....*...
gi 490280290 176 SVLALLADINQRLNLTIVLITHQLEVVK 203
Cdd:PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAK 210
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
14-227 |
2.37e-42 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 144.30 E-value: 2.37e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 14 TGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlRTGMIFQHFNLLH 93
Cdd:cd03253 12 PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR---AIGVVPQDTVLFN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 94 ArTVADNVAVpleiaGVPRAAREArVRELLALVDLSEKAAAFPSQ-----------LSGGQKQRVGIARALAARPEVLLC 162
Cdd:cd03253 89 D-TIGYNIRY-----GRPDATDEE-VIEAAKAAQIHDKIMRFPDGydtivgerglkLSGGEKQRVAIARAILKNPPILLL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 163 DEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL 227
Cdd:cd03253 162 DEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELL 223
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-227 |
2.69e-42 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 143.73 E-value: 2.69e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrDYRLR 81
Cdd:cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP----HERAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIF--QHFNLLHARTVADNvavpLEIAGVPR--AAREARVRELLALV-DLSEKAAAFPSQLSGGQKQRVGIARALAAR 156
Cdd:cd03224 75 AGIGYvpEGRRIFPELTVEEN----LLLGAYARrrAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-227 |
4.81e-42 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 143.78 E-value: 4.81e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR---Q 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHfNLLHARTVADNVAVPLEIAGVPRAAREAR-------VRELLALVD--LSEKAAAfpsqLSGGQKQRVGIARA 152
Cdd:cd03252 78 VGVVLQE-NVLFNRSIRDNIALADPGMSMERVIEAAKlagahdfISELPEGYDtiVGEQGAG----LSGGQRQRIAIARA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL 227
Cdd:cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELL 224
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
17-227 |
9.46e-42 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 143.06 E-value: 9.46e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 17 PALNDIALQIPKGAIYGILGRSGAGKSTlirCLNLLER---PTSGRILVNGQDITQLNkaaLRDYRLRTGMIFQHFNLLh 93
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKST---VVSLLERfydPTSGEILLDGVDIRDLN---LRWLRSQIGLVSQEPVLF- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 94 ARTVADNVAV---PLEIAGVPRAAREARVRELLalVDLSEK----AAAFPSQLSGGQKQRVGIARALAARPEVLLCDEAT 166
Cdd:cd03249 90 DGTIAENIRYgkpDATDEEVEEAAKKANIHDFI--MSLPDGydtlVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 167 SALDPETTASVLALLADInqRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL 227
Cdd:cd03249 168 SALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELM 225
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-221 |
9.65e-42 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 144.06 E-value: 9.65e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAgTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItQLNKAALRDYRL 80
Cdd:PRK13639 1 ILETRDLKYSYP-DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKSLLEVRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHF-NLLHARTVADNVAV-PLEIaGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:PRK13639 79 TVGIVFQNPdDQLFAPTVEEDVAFgPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-227 |
9.89e-42 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 142.86 E-value: 9.89e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQL--NKaalrdy 78
Cdd:COG1137 3 TLEAENLVKSYGK--RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLpmHK------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGM--------IFQhfNLlharTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIA 150
Cdd:COG1137 75 RARLGIgylpqeasIFR--KL----TVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTiVLIT-HQleVVKT--ICDHAALLEQGEIVESGKLADLL 227
Cdd:COG1137 149 RALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKER-GIG-VLITdHN--VRETlgICDRAYIISEGKVLAEGTPEEIL 224
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
2-226 |
2.09e-41 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 143.35 E-value: 2.09e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTY-AGT--GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNK-AALRD 77
Cdd:PRK13649 3 INLQNVSYTYqAGTpfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnKDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 YRLRTGMIFQhF--NLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKA-AAFPSQLSGGQKQRVGIARALA 154
Cdd:PRK13649 83 IRKKVGLVFQ-FpeSQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLfEKNPFELSGGQMRRVAIAGILA 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 155 ARPEVLLCDEATSALDPETTASVLALLADINQrLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-230 |
3.10e-41 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 141.53 E-value: 3.10e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaalrDYRLR 81
Cdd:cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPM----HKRAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIF--QHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:cd03218 75 LGIGYlpQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRlNLTIvLIT-HQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGV-LITdHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
18-221 |
7.29e-41 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 143.31 E-value: 7.29e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLRTGMIFQH-FNLLHAR- 95
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDpLASLNPRm 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEI--AGVPRAAREARVRELLALVDLSEKAA-AFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPE 172
Cdd:PRK15079 116 TIGEIIAEPLRTyhPKLSRQEVKDRVKAMMLKVGLLPNLInRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 490280290 173 TTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK15079 196 IQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-217 |
1.09e-40 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 140.97 E-value: 1.09e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNgqditqlnKAALRDYRLR 81
Cdd:PRK11247 13 LLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG--------TAPLAEARED 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLeiagvpRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGL------KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-239 |
1.14e-40 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 140.12 E-value: 1.14e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkAAlrDYRL 80
Cdd:COG0410 3 MLEVENLHAGYGGI--HVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGL--PP--HRIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGM--------IFQHFnllharTVADNvavpLEIAGVPRAAReARVRELLALV-----DLSEKAAAFPSQLSGGQKQRV 147
Cdd:COG0410 77 RLGIgyvpegrrIFPSL------TVEEN----LLLGAYARRDR-AEVRADLERVyelfpRLKERRRQRAGTLSGGEQQML 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG0410 146 AIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELL 224
|
250
....*....|..
gi 490280290 228 VTPwsRLRQSLL 239
Cdd:COG0410 225 ADP--EVREAYL 234
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-208 |
5.34e-40 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 137.95 E-value: 5.34e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYA-----GTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQD-ITQLNKAA 74
Cdd:COG4778 4 LLEVENLSKTFTlhlqgGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgWVDLAQAS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 75 LRD-YRLRTGMI-----FqhfnlLHA--RTVA-DNVAVPLEIAGVPRAAREARVRELLALVDLSEK-AAAFPSQLSGGQK 144
Cdd:COG4778 84 PREiLALRRRTIgyvsqF-----LRVipRVSAlDVVAEPLLERGVDREEARARARELLARLNLPERlWDLPPATFSGGEQ 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 145 QRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDH 208
Cdd:COG4778 159 QRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADR 221
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-238 |
1.22e-39 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 138.36 E-value: 1.22e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSktYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRL 80
Cdd:PRK11831 7 LVDMRGVS--FTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPL-EIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLrEHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSL 238
Cdd:PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFL 243
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
19-243 |
1.42e-39 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 137.21 E-value: 1.42e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALrdyrlrtgMIFQHFNLLHARTVA 98
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--------VVFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 DNVAVPLE--IAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTAS 176
Cdd:TIGR01184 73 ENIALAVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 177 VLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVtPWSRLRQSLLHDPQ 243
Cdd:TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPF-PRPRDRLEVVEDPS 218
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-218 |
1.48e-39 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 134.86 E-value: 1.48e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaalrdyrlr 81
Cdd:cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS---------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 tgmifqhfnllhartvadnvavpleiagvPRAAREARVrellALVdlsekaaafpSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03216 69 -----------------------------PRDARRAGI----AMV----------YQLSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-218 |
4.27e-39 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 135.08 E-value: 4.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 3 TIEGLSKTYAGTGRpALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItqlnkaALRDYRLRT 82
Cdd:cd03226 1 RIENISFSYKKGTE-ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI------KAKERRKSI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 83 GMIFQHFNL-LHARTVADNVAVPLEIAGvpraAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03226 74 GYVMQDVDYqLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 162 CDEATSALDPETTASVLALLADInQRLNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
19-236 |
4.63e-39 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 136.72 E-value: 4.63e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL------ERPTSGRILVNGQDITQLNKAALRDyrlRTGMIFQHFNLL 92
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLieiydsKIKVDGKVLYFGKDIFQIDAIKLRK---EVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 93 HARTVADNVAVPLEIAGVpRAAREAR--VRELLALVDL----SEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEAT 166
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGI-KEKREIKkiVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 167 SALDPETTASVLALLADINQRlnLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQ 236
Cdd:PRK14246 182 SMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
21-221 |
4.93e-39 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 135.31 E-value: 4.93e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAalrdyRLRTGMIFQHFNLLHARTVADN 100
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA-----DRPVSMLFQENNLFAHLTVEQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 101 VAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLAL 180
Cdd:cd03298 91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490280290 181 LADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03298 171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-230 |
6.16e-39 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 136.86 E-value: 6.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnKAALRDYRL 80
Cdd:PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT---KENIREVRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFN-LLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK13652 79 FVGLVFQNPDdQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-227 |
8.81e-39 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 142.16 E-value: 8.81e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIrclNLLER---PTSGRILVNGQDITQLnkaALRDY 78
Cdd:TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLV---NLIPRfyePDSGQILLDGHDLADY---TLASL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHArTVADNVAVpleiaGVPRAAREARVRELLA------LVDLSEKAAAFP-----SQLSGGQKQRV 147
Cdd:TIGR02203 405 RRQVALVSQDVVLFND-TIANNIAY-----GRTEQADRAEIERALAaayaqdFVDKLPLGLDTPigengVLLSGGQRQRL 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL 227
Cdd:TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERGTHNELL 555
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-241 |
1.20e-38 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 135.63 E-value: 1.20e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyRL 80
Cdd:COG4559 1 MLEAENLSVRLGG--RTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELA--RR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIfQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALA------ 154
Cdd:COG4559 77 RAVLP-QHSSLAFPFTVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwepv 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 155 -ARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGkladllvTPWSR 233
Cdd:COG4559 156 dGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQG-------TPEEV 227
|
....*...
gi 490280290 234 LRQSLLHD 241
Cdd:COG4559 228 LTDELLER 235
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-217 |
2.14e-38 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 132.34 E-value: 2.14e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD---H 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLhARTVADNVavpleiagvpraarearvrellalvdlsekaaafpsqLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03246 78 VGYLPQDDELF-SGSIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILV 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVkTICDHAALLEQGEI 217
Cdd:cd03246 120 LDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPETL-ASADRILVLEDGRV 173
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-221 |
2.90e-38 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 139.94 E-value: 2.90e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLE--RPTSGRILVN---------------- 63
Cdd:TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyEPTSGRIIYHvalcekcgyverpskv 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 64 GQ--------------DITQLNKAALRDYRLRTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDL 128
Cdd:TIGR03269 79 GEpcpvcggtlepeevDFWNLSDKLRRRIRKRIAIMLQRtFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 129 SEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDH 208
Cdd:TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238
|
250
....*....|...
gi 490280290 209 AALLEQGEIVESG 221
Cdd:TIGR03269 239 AIWLENGEIKEEG 251
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
21-244 |
4.25e-38 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 136.78 E-value: 4.25e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNG---QDITQlnKAALRDYRLRTGMIFQHFNLLHARTV 97
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlFDSRK--GIFLPPEKRRIGYVFQEARLFPHLSV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 ADNVAVPLEIAGVP-RAAREARVRELLALVDLSEKaaaFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTAS 176
Cdd:TIGR02142 93 RGNLRYGMKRARPSeRRISFERVIELLGIGHLLGR---LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 177 VLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLlvtpWSRLRQSLLHDPQA 244
Cdd:TIGR02142 170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV----WASPDLPWLAREDQ 233
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-228 |
1.04e-37 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 132.35 E-value: 1.04e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:cd03254 3 IEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS---M 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHfNLLHARTVADNVAVPLEIAG---VPRAAREARVRELL-ALVD-----LSEKAaafpSQLSGGQKQRVGIARA 152
Cdd:cd03254 79 IGVVLQD-TFLFSGTIMENIRLGRPNATdeeVIEAAKEAGAHDFImKLPNgydtvLGENG----GNLSQGERQLLAIARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLLV 228
Cdd:cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA 226
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-241 |
1.24e-37 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 132.97 E-value: 1.24e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRl 80
Cdd:PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 rtGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALA------ 154
Cdd:PRK13548 79 --AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepd 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 155 ARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGkladllvTPWSRL 234
Cdd:PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG-------TPAEVL 229
|
....*..
gi 490280290 235 RQSLLHD 241
Cdd:PRK13548 230 TPETLRR 236
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
2-230 |
1.50e-37 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 139.71 E-value: 1.50e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR---Q 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHArTVADNVAvpleiAGVPRAAREARvrELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIA 150
Cdd:TIGR03797 529 LGVVLQNGRLMSG-SIFENIA-----GGAPLTLDEAW--EAARMAGLAEDIRAMPmgmhtviseggGTLSGGQRQRLLIA 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLAdinqRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLLVTP 230
Cdd:TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLE----RLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMARE 675
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
19-230 |
4.99e-37 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 131.12 E-value: 4.99e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL-----ERPTSGRILVNGQDITQLNKAALRdYRLRTGMIFQHFNLLH 93
Cdd:PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGRNIYSPDVDPIE-VRREVGMVFQYPNPFP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 94 ARTVADNVAVPLEIAGVPRAARE--ARVRELL---ALVD-LSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATS 167
Cdd:PRK14267 99 HLTIYDNVAIGVKLNGLVKSKKEldERVEWALkkaALWDeVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 168 ALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PRK14267 179 NIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-221 |
5.87e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 131.89 E-value: 5.87e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAgTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAaLRDYRL 80
Cdd:PRK13636 5 ILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG-LMKLRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK13636 83 SVGMVFQDpDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-221 |
6.83e-37 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 129.71 E-value: 6.83e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkaalrDYRLR 81
Cdd:cd03269 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-------AARNR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 162 CDEATSALDPettASVLALLADINQ--RLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03269 152 LDEPFSGLDP---VNVELLKDVIRElaRAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-254 |
7.32e-37 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 131.26 E-value: 7.32e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAgTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKaaLRDYRL 80
Cdd:PRK13644 1 MIRLENVSYSYP-DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK--LQGIRK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNL-LHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK13644 78 LVGIVFQNPETqFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKtICDHAALLEQGEIVESGKLADLLVTPwsRLRQSLL 239
Cdd:PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLSDV--SLQTLGL 233
|
250
....*....|....*....
gi 490280290 240 HDPQ----AEQefLTRHGV 254
Cdd:PRK13644 234 TPPSlielAEN--LKMHGV 250
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-198 |
4.53e-36 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 127.21 E-value: 4.53e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkaALRDYRL 80
Cdd:COG4133 2 MLEAENLSCRRGE--RLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRD----AREDYRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPLEIAGVPraAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:COG4133 76 RLAYLGHADGLKPELTVRENLRFWAALYGLR--ADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLW 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRlNLTIVLITHQ 198
Cdd:COG4133 154 LLDEPFTALDAAGVALLAELIAAHLAR-GGAVLLTTHQ 190
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-221 |
2.02e-35 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 127.44 E-value: 2.02e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL---ERPTSGRILVNGQDITQLNKAA--L 75
Cdd:PRK09984 4 IIRVEKLAKTF--NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgDKSAGSHIELLGRTVQREGRLArdI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 76 RDYRLRTGMIFQHFNLLHARTVADNVAV------PLEIAGVPRAAREARVRELLAL--VDLSEKAAAFPSQLSGGQKQRV 147
Cdd:PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIgalgstPFWRTCFSWFTREQKQRALQALtrVGMVHFAHQRVSTLSGGQQQRV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
19-229 |
4.02e-35 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 127.13 E-value: 4.02e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRLRTGMIFQH-FNLLHARTV 97
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN---VWNLRRKIGMVFQNpDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 ADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASV 177
Cdd:PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 490280290 178 LALLADINQRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLLVT 229
Cdd:PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFAT 230
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-221 |
4.73e-35 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 124.91 E-value: 4.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaALRDYRLR 81
Cdd:cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI---GLHDLRSR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHfNLLHARTVADNVAvPLEIAGvpraarEARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIA 150
Cdd:cd03244 80 ISIIPQD-PVLFSGTIRSNLD-PFGEYS------DEELWQALERVGLKEFVESLPggldtvveeggENLSVGQRQLLCLA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLAdiNQRLNLTIVLITHQLEvvkTI--CDHAALLEQGEIVESG 221
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAHRLD---TIidSDRILVLDKGRVVEFD 219
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-221 |
7.00e-35 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 124.79 E-value: 7.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkaALRDY 78
Cdd:cd03266 1 MITADALTKRFRDVKKTvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK----EPAEA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 159 VLLCDEATSALDPETTASVLALLADInQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03266 157 VLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-225 |
1.10e-34 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 124.81 E-value: 1.10e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTY--------------AGTGRP------ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRI 60
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkellLRRRRTrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 61 LVNGqditqlNKAALrdyrLRTGMIFqHFNLlharTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEkaaaF---P- 136
Cdd:COG1134 84 EVNG------RVSAL----LELGAGF-HPEL----TGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGD----FidqPv 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 137 SQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGE 216
Cdd:COG1134 145 KTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEKGR 223
|
....*....
gi 490280290 217 IVESGKLAD 225
Cdd:COG1134 224 LVMDGDPEE 232
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-227 |
1.13e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 126.00 E-value: 1.13e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGT---GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAA-LR 76
Cdd:PRK13643 1 MIKFEKVNYTYQPNspfASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKeIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRTGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKA-AAFPSQLSGGQKQRVGIARALA 154
Cdd:PRK13643 81 PVRKKVGVVFQFpESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFwEKSPFELSGGQMRRVAIAGILA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 155 ARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
18-239 |
1.17e-34 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 130.21 E-value: 1.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKST----LIRCLNllerpTSGRILVNGQDITQLNKAALRDYRLRTGMIFQHFN-LL 92
Cdd:PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNsSL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 93 HAR-TVADNVAVPLEI--AGVPRAAREARVRELLALVDLS-EKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSA 168
Cdd:PRK15134 376 NPRlNVLQIIEEGLRVhqPTLSAAQREQQVIAVMEEVGLDpETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 169 LDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSLL 239
Cdd:PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLL 526
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
16-227 |
2.59e-34 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 129.94 E-value: 2.59e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRclnLLER---PTSGRILVNGQDITQLNKAALRDYrlrTGMIFQH---F 89
Cdd:COG5265 371 RPILKGVSFEVPAGKTVAIVGPSGAGKSTLAR---LLFRfydVTSGRILIDGQDIRDVTQASLRAA---IGIVPQDtvlF 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 90 NllhaRTVADNVAVpleiaGVPRAAREArVRELLALVDLSEKAAAFPSQ-----------LSGGQKQRVGIARALAARPE 158
Cdd:COG5265 445 N----DTIAYNIAY-----GRPDASEEE-VEAAARAAQIHDFIESLPDGydtrvgerglkLSGGEKQRVAIARTLLKNPP 514
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEvvkTI--CDHAALLEQGEIVESGKLADLL 227
Cdd:COG5265 515 ILIFDEATSALDSRTERAIQAALREVAR--GRTTLVIAHRLS---TIvdADEILVLEAGRIVERGTHAELL 580
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-239 |
5.00e-34 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 128.67 E-value: 5.00e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTY--AGTGRPALNDIALQIPKGAIYGILGRSGAGKS-TLIRCLNLLERP----TSGRILVNGQDITQLNKA 73
Cdd:PRK15134 5 LLAIENLSVAFrqQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGESLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 74 ALRDYR-LRTGMIFQH----FNLLHarTVADNVAvplEIAGVPRAAR-EARVRELLALVD------LSEKAAAFPSQLSG 141
Cdd:PRK15134 85 TLRGVRgNKIAMIFQEpmvsLNPLH--TLEKQLY---EVLSLHRGMRrEAARGEILNCLDrvgirqAAKRLTDYPHQLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 142 GQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239
|
250
....*....|....*...
gi 490280290 222 KLADLLVTPWSRLRQSLL 239
Cdd:PRK15134 240 RAATLFSAPTHPYTQKLL 257
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-227 |
7.78e-34 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 128.60 E-value: 7.78e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIrclNLLER---PTSGRILVNGQDitqlnkaaLRDY 78
Cdd:PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA---NLLTRfydIDEGEILLDGHD--------LRDY 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRT-----GMIFQHFNLLHaRTVADNVAVPLE----IAGVPRAAREARVRELLALVD------LSEKAAAfpsqLSGGQ 143
Cdd:PRK11176 411 TLASlrnqvALVSQNVHLFN-DTIANNIAYARTeqysREQIEEAARMAYAMDFINKMDngldtvIGENGVL----LSGGQ 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 144 KQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKL 223
Cdd:PRK11176 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTH 562
|
....
gi 490280290 224 ADLL 227
Cdd:PRK11176 563 AELL 566
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
4-223 |
9.25e-34 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 121.74 E-value: 9.25e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkaalRDYRlRTG 83
Cdd:TIGR03740 3 TKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR------KDLH-KIG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNLLHARTVADNVAVPLEIAGVPraarEARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCD 163
Cdd:TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 164 EATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKL 223
Cdd:TIGR03740 150 EPTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-202 |
1.71e-33 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 127.02 E-value: 1.71e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:TIGR02857 322 LEFSGVSVAYPGR-RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD---Q 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHfNLLHARTVADNVAVPLeiagvpRAAREARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIA 150
Cdd:TIGR02857 398 IAWVPQH-PFLFAGTIAENIRLAR------PDASDAEIREALERAGLDEFVAALPqgldtpigeggAGLSGGQAQRLALA 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVV 202
Cdd:TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALA 520
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
2-243 |
2.16e-33 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 124.37 E-value: 2.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAalrdyRLR 81
Cdd:PRK11000 4 VTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA-----ERG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVR---ELLALVDLSEKAaafPSQLSGGQKQRVGIARALAARPE 158
Cdd:PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNqvaEVLQLAHLLDRK---PKALSGGQRQRVAIGRTLVAEPS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRLNLTIVLITH-QLEVVkTICDHAALLEQGEIVESGKLADLLVTPWSRLRQS 237
Cdd:PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHdQVEAM-TLADKIVVLDAGRVAQVGKPLELYHYPANRFVAG 232
|
....*.
gi 490280290 238 LLHDPQ 243
Cdd:PRK11000 233 FIGSPK 238
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-239 |
2.27e-33 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 123.31 E-value: 2.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRP--ALNDIALQIPKGAIYGILGRSGAGKS-TLIRCLNLLERP---TSGRILVNGQDITQLNKAA 74
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPfrAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPgrvMAEKLEFNGQDLQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 75 LRDY-RLRTGMIFQH--FNLLHARTVADNVAVPLEI-AGVPRAAREARVRELLALVDLSEKAA---AFPSQLSGGQKQRV 147
Cdd:PRK11022 83 RRNLvGAEVAMIFQDpmTSLNPCYTVGFQIMEAIKVhQGGNKKTRRQRAIDLLNQVGIPDPASrldVYPHQLSGGMSQRV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242
|
250
....*....|..
gi 490280290 228 VTPWSRLRQSLL 239
Cdd:PRK11022 243 RAPRHPYTQALL 254
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-227 |
2.45e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 123.27 E-value: 2.45e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTY---------AGTGR----------PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRIL 61
Cdd:COG4586 1 IIEVENLSKTYrvyekepglKGALKglfrreyrevEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 62 VNGQDITQLNKAALRdyrlRTGMIFQH-------------FNLLHArtvadnvavpleIAGVPRAAREARVRELLALVDL 128
Cdd:COG4586 81 VLGYVPFKRRKEFAR----RIGVVFGQrsqlwwdlpaidsFRLLKA------------IYRIPDAEYKKRLDELVELLDL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 129 SEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDH 208
Cdd:COG4586 145 GELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDR 224
|
250
....*....|....*....
gi 490280290 209 AALLEQGEIVESGKLADLL 227
Cdd:COG4586 225 VIVIDHGRIIYDGSLEELK 243
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-200 |
2.97e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 121.73 E-value: 2.97e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKT-YAGTG--RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaalRD 77
Cdd:COG1101 1 MLELKNLSKTfNPGTVneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKL-----PE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 YRlRTGMI---FQH------FNLlharTVADNVAvpleIA-----------GVPRAAREaRVRELLALVD------LSEK 131
Cdd:COG1101 76 YK-RAKYIgrvFQDpmmgtaPSM----TIEENLA----LAyrrgkrrglrrGLTKKRRE-LFRELLATLGlglenrLDTK 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 132 AaafpSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLE 200
Cdd:COG1101 146 V----GLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNME 210
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-221 |
3.87e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 121.77 E-value: 3.87e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAgTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:PRK13647 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS---K 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK13647 81 VGLVFQDpDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
15-227 |
4.68e-33 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 120.57 E-value: 4.68e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGrilvngQDIT----QLNKAALRDYRLRTGMIFQHfn 90
Cdd:COG1119 15 GKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYG------NDVRlfgeRRGGEDVWELRKRIGLVSPA-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 lLHARTVADNVAvpLEIA--------GVPR---AAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:COG1119 87 -LQLRFPRDETV--LDVVlsgffdsiGLYReptDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPEL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLE-VVKTIcDHAALLEQGEIVESGKLADLL 227
Cdd:COG1119 164 LILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEeIPPGI-THVLLLKDGRVVAAGPKEEVL 231
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-230 |
5.13e-33 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 121.36 E-value: 5.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 10 TYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSG-----RILVNGQDItqLNKAALRDYRLRTGM 84
Cdd:PRK14271 28 TLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSI--FNYRDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 85 IFQHFNLLhARTVADNVAVPLEIAG-VPR----AAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK14271 106 LFQRPNPF-PMSIMDNVLAGVRAHKlVPRkefrGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRlnLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PRK14271 185 LLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-200 |
7.26e-33 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 122.64 E-value: 7.26e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnKAALRDyrl 80
Cdd:PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL-EPADRD--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 rTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK11650 78 -IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRLNLTIVLITH-QLE 200
Cdd:PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHdQVE 197
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-230 |
8.23e-33 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 120.27 E-value: 8.23e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL-----ERPTSGRILVNGQDITQLNKAAL 75
Cdd:PRK14239 5 ILQVSDLSVYY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIYSPRTDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 76 rDYRLRTGMIFQHFNLLhARTVADNVAVPLEIAGVPRAARearvreLLALVDLSEKAAAFPSQ-----------LSGGQK 144
Cdd:PRK14239 83 -DLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQV------LDEAVEKSLKGASIWDEvkdrlhdsalgLSGGQQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 145 QRVGIARALAARPEVLLCDEATSALDPETTASVLALLadINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLA 224
Cdd:PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL--LGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232
|
....*.
gi 490280290 225 DLLVTP 230
Cdd:PRK14239 233 QMFMNP 238
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-221 |
8.41e-33 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 119.23 E-value: 8.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR---N 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHArTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFP-----SQLSGGQKQRVGIARALAAR 156
Cdd:cd03245 80 IGYVPQDVTLFYG-TLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQigergRGLSGGQRQAVALARALLND 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 157 PEVLLCDEATSALDPETTASVL----ALLADInqrlnlTIVLITHQLEVVkTICDHAALLEQGEIVESG 221
Cdd:cd03245 159 PPILLLDEPTSAMDMNSEERLKerlrQLLGDK------TLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-227 |
1.23e-32 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 124.94 E-value: 1.23e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLircLNLLER---PTSGRILVNGQDITQLNKAALRDy 78
Cdd:PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTL---LQLLTRawdPQQGEILLNGQPIADYSEAALRQ- 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlRTGMIFQHFNLLHArTVADNvavpLEIAGvpRAAREARVRELLALVDLSEKAAAFPS----------QLSGGQKQRVG 148
Cdd:PRK11160 415 --AISVVSQRVHLFSA-TLRDN----LLLAA--PNASDEALIEVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLG 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 149 IARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTIcDHAALLEQGEIVESGKLADLL 227
Cdd:PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQELL 561
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-227 |
1.41e-32 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 118.92 E-value: 1.41e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDiaLQIPKGAIYGILGRSGAGKSTLircLNLLE---RPTSGRILVNGQDITQLNKAalrd 77
Cdd:PRK10771 1 MLKLTDITWLYHHL--PMRFD--LTVERGERVAILGPSGAGKSTL---LNLIAgflTPASGSLTLNGQDHTTTPPS---- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 yRLRTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:PRK10771 70 -RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-227 |
2.73e-32 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 118.65 E-value: 2.73e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyrl 80
Cdd:COG4604 1 MIEIKNVSKRYGGK--VVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELA---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHAR-TVADNVAV---PLEiAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAAR 156
Cdd:COG4604 75 KRLAILRQENHINSRlTVRELVAFgrfPYS-KGRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQD 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG4604 154 TDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEII 224
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
2-227 |
2.75e-32 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 124.30 E-value: 2.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgRPALNDIALQIPKGAIYGILGRSGAGKSTLIrclNLLER---PTSGRILVNGQDITQLNKAALRDY 78
Cdd:PRK13657 335 VEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI---NLLQRvfdPQSGRILIDGTDIRTVTRASLRRN 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlrTGMIFQHfNLLHARTVADNVAVpleiaGVPRAArEARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRV 147
Cdd:PRK13657 411 ---IAVVFQD-AGLFNRSIEDNIRV-----GRPDAT-DEEMRAAAERAQAHDFIERKPdgydtvvgergRQLSGGERQRL 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL 227
Cdd:PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDELV 557
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
18-257 |
6.60e-32 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 117.96 E-value: 6.60e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLER--PT---SGRILVNGQDI--TQLNKAALRDyrlRTGMIFQHFN 90
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDliPGfrvEGKVTFHGKNLyaPDVDPVEVRR---RIGMVFQKPN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 LLhARTVADNVAVPLEIAG--------VPRAAREArvrellALVD-LSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK14243 102 PF-PKSIYDNIAYGARINGykgdmdelVERSLRQA------ALWDeVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVIL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlnLTIVLITHQLEVVKTICDHAALLEQgEIVESGKLADLLVTpWSRlRQSLLHD 241
Cdd:PRK14243 175 MDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFFNV-ELTEGGGRYGYLVE-FDR-TEKIFNS 249
|
250
....*....|....*.
gi 490280290 242 PQAEQeflTRHGVQGR 257
Cdd:PRK14243 250 PQQQA---TRDYVSGR 262
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
3-226 |
7.98e-32 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 116.86 E-value: 7.98e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 3 TIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdyRLRT 82
Cdd:TIGR03410 2 EVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE----RARA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 83 GMIF-----QHFNLLharTVADNVAVPLEIAGVPRAAREARVRELL-ALVDLSEKAAAfpsQLSGGQKQRVGIARALAAR 156
Cdd:TIGR03410 76 GIAYvpqgrEIFPRL---TVEENLLTGLAALPRRSRKIPDEIYELFpVLKEMLGRRGG---DLSGGQQQQLAIARALVTR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
2-226 |
1.20e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 117.96 E-value: 1.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAgTGRP----ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNK-AALR 76
Cdd:PRK13646 3 IRFDNVSYTYQ-KGTPyehqAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKdKYIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRTGMIFQhfnLLHARTVADNVAVPLEIA----GVPRAAREARVRELLALVDLSEKAAAF-PSQLSGGQKQRVGIAR 151
Cdd:PRK13646 82 PVRKRIGMVFQ---FPESQLFEDTVEREIIFGpknfKMNLDEVKNYAHRLLMDLGFSRDVMSQsPFQMSGGQMRKIAIVS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 152 ALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-227 |
1.39e-31 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 121.83 E-value: 1.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGR---PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVN-GQDITQLNKAALr 76
Cdd:TIGR03269 279 IIKVRNVSKRYISVDRgvvKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDMTKPGP- 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRT----GMIFQHFNLLHARTVADNV--AVPLEIagvPRAAREARVRELLALVDLSEKAAA-----FPSQLSGGQKQ 145
Cdd:TIGR03269 358 DGRGRAkryiGILHQEYDLYPHRTVLDNLteAIGLEL---PDELARMKAVITLKMVGFDEEKAEeildkYPDELSEGERH 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 146 RVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLAD 225
Cdd:TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514
|
..
gi 490280290 226 LL 227
Cdd:TIGR03269 515 IV 516
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
16-226 |
1.70e-31 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 122.52 E-value: 1.70e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyrlRTGMIFQHFNLLHAR 95
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH----RQVALVGQEPVLFSG 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPL---EIAGVPRAAREARVRELLALV------DLSEKAaafpSQLSGGQKQRVGIARALAARPEVLLCDEAT 166
Cdd:TIGR00958 570 SVRENIAYGLtdtPDEEIMAAAKAANAHDFIMEFpngydtEVGEKG----SQLSGGQKQRIAIARALVRKPRVLILDEAT 645
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 167 SALDpettASVLALLADINQRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADL 226
Cdd:TIGR00958 646 SALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQL 700
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-227 |
1.79e-31 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 121.78 E-value: 1.79e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYrlr 81
Cdd:COG4618 331 LSVENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRH--- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLhARTVADNVAVPLEI--AGVPRAAREARVREL-LALVD-----LSEKAAAfpsqLSGGQKQRVGIARAL 153
Cdd:COG4618 408 IGYLPQDVELF-DGTIAENIARFGDAdpEKVVAAAKLAGVHEMiLRLPDgydtrIGEGGAR----LSGGQRQRIGLARAL 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 154 AARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKtICDHAALLEQGEIVESGKLADLL 227
Cdd:COG4618 483 YGDPRLVVLDEPNSNLDDEGEAALAAAIRALKAR-GATVVVITHRPSLLA-AVDKLLVLRDGRVQAFGPRDEVL 554
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-239 |
8.10e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 115.13 E-value: 8.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL-----ERPTSGRILVNGQDITQlNKAALR 76
Cdd:PRK14258 8 IKVNNLSFYY--DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMnelesEVRVEGRVEFFNQNIYE-RRVNLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRTGMIFQHFNLLhARTVADNVAVPLEIAG-VPRAAREARVRELLALVDL----SEKAAAFPSQLSGGQKQRVGIAR 151
Cdd:PRK14258 85 RLRRQVSMVHPKPNLF-PMSVYDNVAYGVKIVGwRPKLEIDDIVESALKDADLwdeiKHKIHKSALDLSGGQQQRLCIAR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 152 ALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQ-----GEIVESGKLADL 226
Cdd:PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKI 243
|
250
....*....|....
gi 490280290 227 LVTPW-SRLRQSLL 239
Cdd:PRK14258 244 FNSPHdSRTREYVL 257
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
21-246 |
1.28e-30 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 116.51 E-value: 1.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQ---DITQlnKAALRDYRLRTGMIFQHFNLLHARTV 97
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRvlfDAEK--GICLPPEKRRIGYVFQDARLFPHYKV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 ADNVAVpleiaGVPRAARE--ARVRELLALVDLSEKaaaFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTA 175
Cdd:PRK11144 94 RGNLRY-----GMAKSMVAqfDKIVALLGIEPLLDR---YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 176 SVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL----LVTPWSRLRQ--SLLHDPQAEQ 246
Cdd:PRK11144 166 ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVwassAMRPWLPKEEqsSILKVTVLEH 242
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-227 |
1.50e-30 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 119.84 E-value: 1.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYaGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRdyrlr 81
Cdd:TIGR01193 474 IVINDVSYSY-GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR----- 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 tgmifQHFNLL------HARTVADNVavpleIAGVPRAAREARVRELLALVDLSEKAAAFP-----------SQLSGGQK 144
Cdd:TIGR01193 548 -----QFINYLpqepyiFSGSILENL-----LLGAKENVSQDEIWAACEIAEIKDDIENMPlgyqtelseegSSISGGQK 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 145 QRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRlnlTIVLITHQLEVVKTIcDHAALLEQGEIVESGKLA 224
Cdd:TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHD 693
|
...
gi 490280290 225 DLL 227
Cdd:TIGR01193 694 ELL 696
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-239 |
3.42e-30 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 113.73 E-value: 3.42e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTY---AGTGR----PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqLNKA 73
Cdd:PRK15112 4 LLEVRNLSKTFryrTGWFRrqtvEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 74 ALRDYRLRtgMIFQH-FNLLHART-VADNVAVPLEI-AGVPRAAREARVRELLALVDL-SEKAAAFPSQLSGGQKQRVGI 149
Cdd:PRK15112 83 SYRSQRIR--MIFQDpSTSLNPRQrISQILDFPLRLnTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 150 ARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVT 229
Cdd:PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
250
....*....|
gi 490280290 230 PWSRLRQSLL 239
Cdd:PRK15112 241 PLHELTKRLI 250
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-244 |
7.50e-30 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 112.49 E-value: 7.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSktyAGTGRPALNDIALQIPKGAIYGILGRSGAGKStlIRCLNLLE------RPTSGRILVNGQDITqlnKAAL 75
Cdd:PRK10418 5 IELRNIA---LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGilpagvRQTAGRVLLDGKPVA---PCAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 76 RDYRLRTgmIFQH----FNLLHarTVADNVAVPLEIAGVPraAREARVRELLALVDLSEKAA---AFPSQLSGGQKQRVG 148
Cdd:PRK10418 77 RGRKIAT--IMQNprsaFNPLH--TMHTHARETCLALGKP--ADDATLTAALEAVGLENAARvlkLYPFEMSGGMLQRMM 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 149 IARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLV 228
Cdd:PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230
|
250
....*....|....*.
gi 490280290 229 TPWSRLRQSLLHDPQA 244
Cdd:PRK10418 231 APKHAVTRSLVSAHLA 246
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
18-230 |
8.69e-30 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 114.05 E-value: 8.69e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKS-TLIRCLNLLERP--TSGRILVNGQDITQLNKAALRdyRLRT---GMIFQH--F 89
Cdd:PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGLLAANgrIGGSATFNGREILNLPEKELN--KLRAeqiSMIFQDpmT 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 90 NLLHARTVADNVAVPLEI-AGVPRA-AREARVRELLAlVDLSE---KAAAFPSQLSGGQKQRVGIARALAARPEVLLCDE 164
Cdd:PRK09473 109 SLNPYMRVGEQLMEVLMLhKGMSKAeAFEESVRMLDA-VKMPEarkRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 165 ATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PRK09473 188 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP 253
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
2-221 |
1.14e-29 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 111.09 E-value: 1.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRP--------------------ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRIL 61
Cdd:cd03220 1 IELENVSKSYPTYKGGssslkklgilgrkgevgefwALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 62 VNGQDITQLNkaalrdyrLRTGMifqHFNLlharTVADNVAVPLEIAGVPRAAREARVREllaLVDLSEKAAAF--P-SQ 138
Cdd:cd03220 81 VRGRVSSLLG--------LGGGF---NPEL----TGRENIYLNGRLLGLSRKEIDEKIDE---IIEFSELGDFIdlPvKT 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 139 LSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNlTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:cd03220 143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLCDRALVLEKGKIR 221
|
...
gi 490280290 219 ESG 221
Cdd:cd03220 222 FDG 224
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
18-221 |
1.29e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 113.41 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRI----LVNGQDITQLNKAA---------LRDYRLRTGM 84
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELITnpyskkiknFKELRRRVSM 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 85 IFQ--HFNLLHARTVADNVAVPLEIaGVPRAarEARVRELLALVDLSEKAAAF---PSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK13631 121 VFQfpEYQLFKDTIEKDIMFGPVAL-GVKKS--EAKKLAKFYLNKMGLDDSYLersPFGLSGGQKRRVAIAGILAIQPEI 197
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK13631 198 LIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
18-221 |
4.50e-29 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 115.34 E-value: 4.50e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLRTGMIFQ--HFNLLHAR 95
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQdpYASLDPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEIAGV-PRAAREARVRELLALVDL-SEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPET 173
Cdd:PRK10261 419 TVGDSIMEPLRVHGLlPGKAAAARVAWLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 490280290 174 TASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK10261 499 RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-227 |
4.62e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 111.72 E-value: 4.62e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYaGTGRP----ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAL-- 75
Cdd:PRK13651 3 IKVKNIVKIF-NKKLPtelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEke 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 76 -------------------RDYRLRTGMIFQ--HFNLLHARTVADNVAVPLEIaGVPRAAREARVRELLALVDLSEK-AA 133
Cdd:PRK13651 82 kvleklviqktrfkkikkiKEIRRRVGVVFQfaEYQLFEQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDESyLQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 134 AFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLE 213
Cdd:PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFK 239
|
250
....*....|....
gi 490280290 214 QGEIVESGKLADLL 227
Cdd:PRK13651 240 DGKIIKDGDTYDIL 253
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
19-219 |
6.45e-29 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 109.48 E-value: 6.45e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLN---KAALRDYRLrtGMIFQHFNLLHAR 95
Cdd:PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDeeaRAKLRAKHV--GFVFQSFMLIPTL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTA 175
Cdd:PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 490280290 176 SVLALLADINQRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVE 219
Cdd:PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
15-227 |
6.82e-29 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 110.26 E-value: 6.82e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdYRLRTGMIFQHFNLLHA 94
Cdd:PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA---FARKVAYLPQQLPAAEG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 95 RTVADNVAV---PLEIA-GVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:PRK10575 100 MTVRELVAIgryPWHGAlGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 171 PETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK10575 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
19-219 |
7.16e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 110.69 E-value: 7.16e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDIT-QLNKAALRDYRLRTGMIFQhF--NLLHAR 95
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpETGNKNLKKLRKKVSLVFQ-FpeAQLFEN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAV-PLEIAGVPRAAREARVrELLALVDLSEKAAA-FPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPET 173
Cdd:PRK13641 102 TVLKDVEFgPKNFGFSEDEAKEKAL-KWLKKVGLSEDLISkSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 490280290 174 TASVLALLADInQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVE 219
Cdd:PRK13641 181 RKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-260 |
7.98e-29 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 109.72 E-value: 7.98e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaALRDYRL 80
Cdd:PRK11231 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML---SSRQLAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAV---P-LEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAAR 156
Cdd:PRK11231 77 RLALLPQHHLTPEGITVRELVAYgrsPwLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGkladllvTPWSRLRQ 236
Cdd:PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG-------TPEEVMTP 228
|
250 260
....*....|....*....|....*..
gi 490280290 237 SLLH---DPQAEqefLTRHGVQGRPLC 260
Cdd:PRK11231 229 GLLRtvfDVEAE---IHPEPVSGTPMC 252
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
2-221 |
8.47e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 109.34 E-value: 8.47e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYA---------GTGR----------PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILV 62
Cdd:cd03267 1 IEVSNLSKSYRvyskepgliGSLKslfkrkyrevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 63 NGQDITQLNKAALRdyrlRTGMIF-QHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSG 141
Cdd:cd03267 81 AGLVPWKRRKKFLR----RIGVVFgQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 142 GQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:cd03267 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
10-217 |
1.07e-28 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 108.71 E-value: 1.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 10 TYAGTGRPA---LNDIALQIPKGAIYGILGRSGAGKSTlirCLNLLER---PTSGRILVNGQDITQLNKAALRDyrlRTG 83
Cdd:cd03248 18 TFAYPTRPDtlvLQDVSFTLHPGEVTALVGPSGSGKST---VVALLENfyqPQGGQVLLDGKPISQYEHKYLHS---KVS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHfNLLHARTVADNVAVPL---EIAGVPRAAREARVRELLALVDL--SEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:cd03248 92 LVGQE-PVLFARSLQDNIAYGLqscSFECVKEAAQKAHAHSFISELASgyDTEVGEKGSQLSGGQKQRVAIARALIRNPQ 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRlnLTIVLITHQLEVVKTiCDHAALLEQGEI 217
Cdd:cd03248 171 VLILDEATSALDAESEQQVQQALYDWPER--RTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-226 |
1.21e-28 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 113.34 E-value: 1.21e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrDYRL 80
Cdd:PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKL--AAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAV---PL-EIAGVPRAA-REARVRELLAL------VDLSEKAAafpsQLSGGQKQRVGI 149
Cdd:PRK09700 81 GIGIIYQELSVIDELTVLENLYIgrhLTkKVCGVNIIDwREMRVRAAMMLlrvglkVDLDEKVA----NLSISHKQMLEI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 150 ARALAARPEVLLCDEATSALdpeTTASVLALLADINQRLN--LTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK09700 157 AKTLMLDAKVIIMDEPTSSL---TNKEVDYLFLIMNQLRKegTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-227 |
2.02e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 110.69 E-value: 2.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdyRLR 81
Cdd:PRK13536 42 IDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA----RAR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-227 |
5.94e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 108.74 E-value: 5.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdyRLR 81
Cdd:PRK13537 8 IDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA----RQR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-222 |
1.28e-27 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 106.61 E-value: 1.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItqlnkAALRDYRL 80
Cdd:PRK11300 5 LLSVSGLMMRFGGL--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI-----EGLPGHQI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 -RTGMI--FQHFNLLHARTVADNVAVP-------------LEIAGVPRAAREA--RVRELLALVDLSEKAAAFPSQLSGG 142
Cdd:PRK11300 78 aRMGVVrtFQHVRLFREMTVIENLLVAqhqqlktglfsglLKTPAFRRAESEAldRAATWLERVGLLEHANRQAGNLAYG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 143 QKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGK 222
Cdd:PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
18-240 |
2.05e-27 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 107.68 E-value: 2.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRC-LNLLE---RPTSGRILVNGQDITQLNKAALRDYRLR-TGMIFQHFN-- 90
Cdd:COG4170 22 AVDRVSLTLNEGEIRGLVGESGSGKSLIAKAiCGITKdnwHVTADRFRWNGIDLLKLSPRERRKIIGReIAMIFQEPSsc 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 LLHARTVADNV--AVPLEIAGVP----RAAREARVRELLALV---DLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:COG4170 102 LDPSAKIGDQLieAIPSWTFKGKwwqrFKWRKKRAIELLHRVgikDHKDIMNSYPHELTEGECQKVMIAMAIANQPRLLI 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSLLH 240
Cdd:COG4170 182 ADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSPHHPYTKALLR 260
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
13-221 |
3.56e-27 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 103.78 E-value: 3.56e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 13 GTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLN--LLERPTSGRILVNGQDITqlnkaaLRDYRLRTGMIFQHFN 90
Cdd:cd03213 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLINGRPLD------KRSFRKIIGYVPQDDI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 LLHARTVADNVAVPLEIAGvpraarearvrellalvdlsekaaafpsqLSGGQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:cd03213 93 LHPTLTVRETLMFAAKLRG-----------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 490280290 171 PETTASVLALLADINQrLNLTIVLITHQL--EVVKTiCDHAALLEQGEIVESG 221
Cdd:cd03213 144 SSSALQVMSLLRRLAD-TGRTIICSIHQPssEIFEL-FDKLLLLSQGRVIYFG 194
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
17-260 |
8.39e-27 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 104.70 E-value: 8.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 17 PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItQLNKAALRDYRLRTGMIFQHFNLLHART 96
Cdd:PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL-DYSKRGLLALRQQVATVFQDPEQQIFYT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 97 VAD-NVAVPLEIAGVPRAAREARVRELLALVDlsekAAAFPSQ----LSGGQKQRVGIARALAARPEVLLCDEATSALDP 171
Cdd:PRK13638 94 DIDsDIAFSLRNLGVPEAEITRRVDEALTLVD----AQHFRHQpiqcLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 172 ETTASVLALLADINQRLNlTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVtpwsrlRQSLLHDPQAEQEFLTR 251
Cdd:PRK13638 170 AGRTQMIAIIRRIVAQGN-HVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA------CTEAMEQAGLTQPWLVK 242
|
250
....*....|
gi 490280290 252 -HGVQGRPLC 260
Cdd:PRK13638 243 lHTQLGLPLC 252
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-221 |
1.97e-26 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 102.11 E-value: 1.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnKAALRDYRLR 81
Cdd:cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS---TIPLEDLRSS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLhARTVADNVAVPLEIAGVpraarearvrELLALVDLSEKAaafpSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03369 84 LTIIPQDPTLF-SGTIRSNLDPFDEYSDE----------EIYGALRVSEGG----LNLSQGQRQLLCLARALLKRPRVLV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 162 CDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESG 221
Cdd:cd03369 149 LDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-239 |
4.76e-26 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 106.48 E-value: 4.76e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 17 PALNDIALQIPKGAIYGILGRSGAGKS-TLIRCLNLLERP----TSGRILV---NGQ--DITQLNKAALRDYR-LRTGMI 85
Cdd:PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAgglvQCDKMLLrrrSRQviELSEQSAAQMRHVRgADMAMI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 86 FQH--FNLLHARTVADNVAVPLEI---AGVPRAAREA-RVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK10261 110 FQEpmTSLNPVFTVGEQIAESIRLhqgASREEAMVEAkRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSRLRQSLL 239
Cdd:PRK10261 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALL 269
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
2-221 |
7.98e-26 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 106.25 E-value: 7.98e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItqlnKAALRDYRLR 81
Cdd:TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI----ETNLDAVRQS 1004
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGvpRAAREARVrELLALVD---LSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKG--RSWEEAQL-EMEAMLEdtgLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK 1081
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 159 VLLCDEATSALDPETTASVLALLadINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:TIGR01257 1082 VVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-227 |
1.04e-25 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 105.57 E-value: 1.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYaGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:PRK10790 341 IDIDNVSFAY-RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ---G 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLhARTVADNVAVPLEIAgvpraarEARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIA 150
Cdd:PRK10790 417 VAMVQQDPVVL-ADTFLANVTLGRDIS-------EEQVWQALETVQLAELARSLPdglytplgeqgNNLSVGQKQLLALA 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADInqRLNLTIVLITHQLEVVkTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAV--REHTTLVVIAHRLSTI-VEADTILVLHRGQAVEQGTHQQLL 562
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
11-197 |
1.32e-25 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 100.56 E-value: 1.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 11 YAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALR---DYRLRTGMIFq 87
Cdd:PRK10247 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRqqvSYCAQTPTLF- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 88 hfnllhARTVADNVAVPLEIAGvpRAAREARVRELLALVDLSEKAAAFP-SQLSGGQKQRVGIARALAARPEVLLCDEAT 166
Cdd:PRK10247 94 ------GDTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNiAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
|
170 180 190
....*....|....*....|....*....|.
gi 490280290 167 SALDPETTASVLALLADINQRLNLTIVLITH 197
Cdd:PRK10247 166 SALDESNKHNVNEIIHRYVREQNIAVLWVTH 196
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-221 |
2.84e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 101.24 E-value: 2.84e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgRP----ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDI-TQLNK-AAL 75
Cdd:PRK13645 7 IILDNVSYTYAKK-TPfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpANLKKiKEV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 76 RDYRLRTGMIFQ--HFNLLHaRTVADNVAV-PLEIaGVPRAAREARVRELLALVDLSEK-AAAFPSQLSGGQKQRVGIAR 151
Cdd:PRK13645 86 KRLRKEIGLVFQfpEYQLFQ-ETIEKDIAFgPVNL-GENKQEAYKKVPELLKLVQLPEDyVKRSPFELSGGQKRRVALAG 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 152 ALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
14-217 |
4.27e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 97.89 E-value: 4.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 14 TGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY--------RLRTGmi 85
Cdd:cd03215 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAgiayvpedRKREG-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 86 fqhfnLLHARTVADNVAvpleiagvpraarearvrellalvdlsekaaaFPSQLSGGQKQRVGIARALAARPEVLLCDEA 165
Cdd:cd03215 89 -----LVLDLSVAENIA--------------------------------LSSLLSGGNQQKVVLARWLARDPRVLILDEP 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 490280290 166 TSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:cd03215 132 TRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-217 |
9.89e-25 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 102.45 E-value: 9.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGqditqlnkaalrdyRLRTG 83
Cdd:COG0488 1 LENLSKSFGG--RPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK--------------GLRIG 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNLLHARTVADNV-------------------AVPLEIAGVPRAAR-------------EARVRELLALVDLSEK 131
Cdd:COG0488 65 YLPQEPPLDDDLTVLDTVldgdaelraleaeleeleaKLAEPDEDLERLAElqeefealggweaEARAEEILSGLGFPEE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 132 AAAFP-SQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTasvlALLADINQRLNLTIVLITHQLEVVKTICDHAA 210
Cdd:COG0488 145 DLDRPvSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESI----EWLEEFLKNYPGTVLVVSHDRYFLDRVATRIL 220
|
....*..
gi 490280290 211 LLEQGEI 217
Cdd:COG0488 221 ELDRGKL 227
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
5-221 |
1.15e-24 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 98.11 E-value: 1.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 5 EGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTL---IRCLNLLERPTSGRILVNGQditQLNKAALRDyrlR 81
Cdd:cd03234 9 VGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLldaISGRVEGGGTTSGQILFNGQ---PRKPDQFQK---C 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGvPRAAREARVRELLALVDLSEKA-----AAFPSQLSGGQKQRVGIARALAAR 156
Cdd:cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLAltrigGNLVKGISGGERRRVSIAVQLLWD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQ--LEVVKTIcDHAALLEQGEIVESG 221
Cdd:cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQprSDLFRLF-DRILLLSSGEIVYSG 226
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
2-221 |
1.46e-24 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 98.80 E-value: 1.46e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAgTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLR 81
Cdd:PRK15056 7 IVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVIL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLeQGEIVESG 221
Cdd:PRK15056 166 LDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASG 223
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-230 |
1.88e-24 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 100.69 E-value: 1.88e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrl 80
Cdd:PRK09536 3 MIDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVavplEIAGVPRAAR--------EARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARA 152
Cdd:PRK09536 78 RVASVPQDTSLSFEFDVRQVV----EMGRTPHRSRfdtwtetdRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 153 LAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-221 |
1.92e-24 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 98.07 E-value: 1.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAL----R 76
Cdd:PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALseaeR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRTGMIFQHFN----LLHARTVADNVAVPLEIAGvpraARE-ARVREL----LALVDL-SEKAAAFPSQLSGGQKQR 146
Cdd:PRK11701 84 RRLLRTEWGFVHQHprdgLRMQVSAGGNIGERLMAVG----ARHyGDIRATagdwLERVEIdAARIDDLPTTFSGGMQQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 147 VGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESG 221
Cdd:PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-227 |
6.01e-24 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 96.50 E-value: 6.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdyRLR 81
Cdd:PRK10895 4 LTAKNLAKAY--KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA----RAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIF--QHFNLLHARTVADNVAVPLEI-AGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:PRK10895 78 RGIGYlpQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
15-226 |
7.98e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 99.92 E-value: 7.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLircLNLLE--RPTSGRILVNGQDITQLNKAalrDYRLRTGMIFQHFNLL 92
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSL---LNALLgfLPYQGSLKINGIELRELDPE---SWRKHLSWVGQNPQLP 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 93 HArTVADNVAVpleiaGVPRAArEARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK11174 436 HG-TLRDNVLL-----GNPDAS-DEQLQQALENAWVSEFLPLLPqgldtpigdqaAGLSVGQAQRLALARALLQPCQLLL 508
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 162 CDEATSALDPETTASVLALLADINQRlnLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADL 226
Cdd:PRK11174 509 LDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAEL 570
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-221 |
1.09e-23 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 94.30 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLircLNLLER---PTSGRILVNGQDITQLnKAALRDY 78
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTL---LQLLTGdlkPQQGEITLDGVPVSDL-EKALSSL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlrTGMIFQHFNLLhARTVADNVAvpleiagvpraarearvrellalvdlsekaaafpSQLSGGQKQRVGIARALAARPE 158
Cdd:cd03247 77 ---ISVLNQRPYLF-DTTLRNNLG----------------------------------RRFSGGERQRLALARILLQDAP 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVKTIcDHAALLEQGEIVESG 221
Cdd:cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
16-205 |
1.37e-23 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 95.03 E-value: 1.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCL--NLLERPTSGRILVNGQDITQlnKAALRDyrlrtgmifqhfNLLH 93
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLagALKGTPVAGCVDVPDNQFGR--EASLID------------AIGR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 94 ARTVADNVavpleiagvpraarearvrELLALVDLSEkAAAF---PSQLSGGQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:COG2401 109 KGDFKDAV-------------------ELLNAVGLSD-AVLWlrrFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLD 168
|
170 180 190
....*....|....*....|....*....|....*
gi 490280290 171 PETTASVLALLADINQRLNLTIVLITHQLEVVKTI 205
Cdd:COG2401 169 RQTAKRVARNLQKLARRAGITLVVATHHYDVIDDL 203
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
10-247 |
1.59e-23 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 99.02 E-value: 1.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 10 TYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLircLNLLERP---TSGRILVNGQDITQLnkaALRDYRLRTGMIF 86
Cdd:PRK10789 322 TYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTL---LSLIQRHfdvSEGDIRFHDIPLTKL---QLDSWRSRLAVVS 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 87 QHfNLLHARTVADNVAV------PLEIAgvpRAAREARVRE-LLAL-----VDLSEKAAafpsQLSGGQKQRVGIARALA 154
Cdd:PRK10789 396 QT-PFLFSDTVANNIALgrpdatQQEIE---HVARLASVHDdILRLpqgydTEVGERGV----MLSGGQKQRISIARALL 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 155 ARPEVLLCDEATSALDPETTASVLALLADINQrlNLTIVLITHQLEVVkTICDHAALLEQGEIVESGKLADLLVTP-WSR 233
Cdd:PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSAL-TEASEILVMQHGHIAQRGNHDQLAQQSgWYR 544
|
250 260
....*....|....*....|.
gi 490280290 234 -------LRQSLLHDPQAEQE 247
Cdd:PRK10789 545 dmyryqqLEAALDDAPEIREE 565
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-199 |
2.23e-23 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 98.59 E-value: 2.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDyrlR 81
Cdd:TIGR02868 335 LELRDLSAGYPG-APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRR---R 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHArTVADNVAVpleiaGVPRAArEARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIA 150
Cdd:TIGR02868 411 VSVCAQDAHLFDT-TVRENLRL-----ARPDAT-DEELWAALERVGLADWLRALPdgldtvlgeggARLSGGERQRLALA 483
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLADINQRlnLTIVLITHQL 199
Cdd:TIGR02868 484 RALLADAPILLLDEPTEHLDAETADELLEDLLAALSG--RTVVLITHHL 530
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
15-227 |
2.38e-23 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 93.75 E-value: 2.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCL--NLLERPTSGRILVNGQDITQLNKaalrDYRLRTG--MIFQHfn 90
Cdd:cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTImgHPKYEVTEGEILFKGEDITDLPP----EERARLGifLAFQY-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 llhartvadnvavPLEIAGVpraareaRVRELLALVDLSekaaafpsqLSGGQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:cd03217 86 -------------PPEIPGV-------KNADFLRYVNEG---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLD 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 171 PETtasvLALLADINQRL---NLTIVLITHQLEVVKTI-CDHAALLEQGEIVESG--KLADLL 227
Cdd:cd03217 137 IDA----LRLVAEVINKLreeGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGdkELALEI 195
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
18-239 |
2.94e-23 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 96.41 E-value: 2.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCL------NLleRPTSGRILVNGQDITQLnkaALRDYRLRTG----MIFQ 87
Cdd:PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIcgvtkdNW--RVTADRMRFDDIDLLRL---SPRERRKLVGhnvsMIFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 88 HFNllHARTVADNVAVPLeIAGVPRAA-----------REARVRELLALV---DLSEKAAAFPSQLSGGQKQRVGIARAL 153
Cdd:PRK15093 97 EPQ--SCLDPSERVGRQL-MQNIPGWTykgrwwqrfgwRKRRAIELLHRVgikDHKDAMRSFPYELTEGECQKVMIAIAL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 154 AARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLLVTPWSR 233
Cdd:PRK15093 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHP 253
|
....*.
gi 490280290 234 LRQSLL 239
Cdd:PRK15093 254 YTQALI 259
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-219 |
3.02e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 98.21 E-value: 3.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVnGQditqlnkaalrdyRL 80
Cdd:COG0488 315 VLELEGLSKSYGD--KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GE-------------TV 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHA-RTVADnvavplEIAGVPRAAREARVRELLALVDLS-EKAAAFPSQLSGGQKQRVGIARALAARPE 158
Cdd:COG0488 379 KIGYFDQHQEELDPdKTVLD------ELRDGAPGGTEQEVRGYLGRFLFSgDDAFKPVGVLSGGEKARLALAKLLLSPPN 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQrlnlTIVLITHQLEVVKTICDHAALLEQGEIVE 219
Cdd:COG0488 453 VLLLDEPTNHLDIETLEALEEALDDFPG----TVLLVSHDRYFLDRVATRILEFEDGGVRE 509
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-216 |
6.86e-22 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 88.27 E-value: 6.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVnGQDITqlnkaalrdyrlr 81
Cdd:cd03221 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW-GSTVK------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 tgmiFQHFnllhartvadnvavpleiagvpraarearvrellalvdlsekaaafpSQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03221 65 ----IGYF-----------------------------------------------EQLSGGEKMRLALAKLLLENPNLLL 93
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 162 CDEATSALDPETTASVLALLADINQrlnlTIVLITHQLEVVKTICDHAALLEQGE 216
Cdd:cd03221 94 LDEPTNHLDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-216 |
1.24e-21 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 89.45 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTY---AGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLnLLE-RPTSGRILVNGqditqlnkaalrd 77
Cdd:cd03250 1 ISVEDASFTWdsgEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL-LGElEKLSGSVSVPG------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 yrlRTGMIFQHFNLLHArTVADNVavpleIAGVP-RAAREARVRELLALV-DLsekaAAFPSQ-----------LSGGQK 144
Cdd:cd03250 67 ---SIAYVSQEPWIQNG-TIRENI-----LFGKPfDEERYEKVIKACALEpDL----EILPDGdlteigekginLSGGQK 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 145 QRVGIARALAARPEVLLCDEATSALDPETTAS-----VLALLADinqrlNLTIVLITHQLEVVKtICDHAALLEQGE 216
Cdd:cd03250 134 QRISLARAVYSDADIYLLDDPLSAVDAHVGRHifencILGLLLN-----NKTRILVTHQLQLLP-HADQIVVLDNGR 204
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
6-226 |
5.28e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 91.53 E-value: 5.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 6 GLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLeRPT---SGRILVNGQDITQLNkaaLRDYRlRT 82
Cdd:PRK13549 10 NITKTFGGV--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YPHgtyEGEIIFEGEELQASN---IRDTE-RA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 83 GM--IFQHFNLLHARTVADNVAVPLEI--AGVPR-AAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:PRK13549 83 GIaiIHQELALVKELSVLENIFLGNEItpGGIMDyDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-218 |
1.29e-20 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 90.65 E-value: 1.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLL--ERPTSGRILVNGQditQLNKAALRDY 78
Cdd:TIGR02633 1 LLEMKGIVKTFGGV--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVypHGTWDGEIYWSGS---PLKASNIRDT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RlRTGM--IFQHFNLLHARTVADNVAVPLEI----AGVPRAAREARVRELLALVDLSEKAAAFP-SQLSGGQKQRVGIAR 151
Cdd:TIGR02633 76 E-RAGIviIHQELTLVPELSVAENIFLGNEItlpgGRMAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAK 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 152 ALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-220 |
3.07e-20 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 89.59 E-value: 3.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 6 GLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdyRLRTG-- 83
Cdd:PRK11288 9 GIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA----ALAAGva 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNLLHARTVADNV---AVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK11288 83 IIYQELHLVPEMTVAENLylgQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 161 LCDEATSALDPETTASVLALLADInqRLNLTIVL-ITHQLEVVKTICDHAALLEQGEIVES 220
Cdd:PRK11288 163 AFDEPTSSLSAREIEQLFRVIREL--RAEGRVILyVSHRMEEIFALCDAITVFKDGRYVAT 221
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-198 |
4.79e-20 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 89.10 E-value: 4.79e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSkTYAGTGRPALNDIALQIPKGAiyGIL--GRSGAGKSTLIRCLNLLERPTSGRILVNGQDitqlnkaalrdy 78
Cdd:COG4178 362 ALALEDLT-LRTPDGRPLLEDLSLSLKPGE--RLLitGPSGSGKSTLLRAIAGLWPYGSGRIARPAGA------------ 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlrtGMIF--QHFNLLHArTVADNVAVPLEiagvPRAAREARVRELLALVDLS------EKAAAFPSQLSGGQKQRVGIA 150
Cdd:COG4178 427 ----RVLFlpQRPYLPLG-TLREALLYPAT----AEAFSDAELREALEAVGLGhlaerlDEEADWDQVLSLGEQQRLAFA 497
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 490280290 151 RALAARPEVLLCDEATSALDPETTASVLALLadiNQRL-NLTIVLITHQ 198
Cdd:COG4178 498 RLLLHKPDWLFLDEATSALDEENEAALYQLL---REELpGTTVISVGHR 543
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-226 |
6.42e-20 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 88.57 E-value: 6.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAalRDYRL 80
Cdd:PRK15439 11 LLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA--KAHQL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVpleiaGVPR-AAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK15439 87 GIYLVPQEPLLFPNLSVKENILF-----GLPKrQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 160 LLCDEATSALDPETTAsvlALLADIN--QRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK15439 162 LILDEPTASLTPAETE---RLFSRIRelLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
21-244 |
8.06e-20 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 85.81 E-value: 8.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaALRDYRLRTGMIFQHFNLLHARTVADN 100
Cdd:PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY---ASKEVARRIGLLAQNATTPGDITVQEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 101 VA------VPLEIAGvpRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETT 174
Cdd:PRK10253 102 VArgryphQPLFTRW--RKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 175 ASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL----LVTPWSRLRQSLLHDPQA 244
Cdd:PRK10253 180 IDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIvtaeLIERIYGLRCMIIDDPVA 253
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
4-226 |
8.19e-20 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 88.25 E-value: 8.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDIT-QLNKAALRDyrlRT 82
Cdd:PRK10982 1 MSNISKSFPGV--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDfKSSKEALEN---GI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 83 GMIFQHFNLLHARTVADNVAV---PLEIAGVPRAA----REARVRELLALVDLSEKAAafpsQLSGGQKQRVGIARALAA 155
Cdd:PRK10982 76 SMVHQELNLVLQRSVMDNMWLgryPTKGMFVDQDKmyrdTKAIFDELDIDIDPRAKVA----TLSVSQMQMIEIAKAFSY 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490280290 156 RPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
18-197 |
4.07e-19 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 86.33 E-value: 4.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdyRLRTGMIFQHFNL------ 91
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIAT----RRRVGYMSQAFSLygeltv 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 92 -----LHARtvadnvavpleIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEAT 166
Cdd:NF033858 357 rqnleLHAR-----------LFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPT 425
|
170 180 190
....*....|....*....|....*....|.
gi 490280290 167 SALDPETTASVLALLADINQRLNLTIVLITH 197
Cdd:NF033858 426 SGVDPVARDMFWRLLIELSREDGVTIFISTH 456
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-218 |
2.10e-18 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 83.92 E-value: 2.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSkTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY----- 78
Cdd:COG3845 260 VENLS-VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLgvayi 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 ---RLRTGMI--FqhfnllharTVADNVAvpLEIAGVP---------RAAREARVRELLALVDL---SEKAAAfpSQLSG 141
Cdd:COG3845 339 pedRLGRGLVpdM---------SVAENLI--LGRYRRPpfsrggfldRKAIRAFAEELIEEFDVrtpGPDTPA--RSLSG 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 142 GQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:COG3845 406 GNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
14-218 |
1.24e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 81.99 E-value: 1.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 14 TGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLN-KAALR--------DyRLRTGm 84
Cdd:COG1129 263 SVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSpRDAIRagiayvpeD-RKGEG- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 85 ifqhfnLLHARTVADNVAVP----LEIAGVPRAARE-ARVRELLALVDL---SEKAAAfpSQLSGGQKQRVGIARALAAR 156
Cdd:COG1129 341 ------LVLDLSIRENITLAsldrLSRGGLLDRRRErALAEEYIKRLRIktpSPEQPV--GNLSGGNQQKVVLAKWLATD 412
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 157 PEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:COG1129 413 PKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIV 473
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
19-227 |
2.11e-17 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 81.53 E-value: 2.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnKAALRDYRLRTGMIFQHfnllhartva 98
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIA---KIGLHDLRFKITIIPQD---------- 1368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 dnvavPLEIAGVPR-------AAREARVRELLALVDLSEKAAAFPSQ-----------LSGGQKQRVGIARALAARPEVL 160
Cdd:TIGR00957 1369 -----PVLFSGSLRmnldpfsQYSDEEVWWALELAHLKTFVSALPDKldhecaeggenLSVGQRQLVCLARALLRKTKIL 1443
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 161 LCDEATSALDPETTASVLALLAdiNQRLNLTIVLITHQLevvKTICDHA--ALLEQGEIVESGKLADLL 227
Cdd:TIGR00957 1444 VLDEATAAVDLETDNLIQSTIR--TQFEDCTVLTIAHRL---NTIMDYTrvIVLDKGEVAEFGAPSNLL 1507
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
10-198 |
2.27e-17 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 77.78 E-value: 2.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 10 TYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaalRDYRLRTGMIFQHF 89
Cdd:TIGR01189 7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQ-----RDEPHENILYLGHL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 90 NLLHAR-TVADNVAVPLEIAGVPRAArearVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSA 168
Cdd:TIGR01189 82 PGLKPElSALENLHFWAAIHGGAQRT----IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTA 157
|
170 180 190
....*....|....*....|....*....|
gi 490280290 169 LDPETTASVLALLADINQRLNLTIvLITHQ 198
Cdd:TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVL-LTTHQ 186
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
19-222 |
5.36e-17 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 80.09 E-value: 5.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERP---TSGRILVNGQDITqlnkaaLRDYRLRTGMIFQHFNLLHAR 95
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPID------AKEMRAISAYVQQDDLFIPTL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEI---AGVPRAAREARVRELLALVDLSeKAA----AFPSQ---LSGGQKQRVGIARALAARPEVLLCDEA 165
Cdd:TIGR00955 115 TVREHLMFQAHLrmpRRVTKKEKRERVDEVLQALGLR-KCAntriGVPGRvkgLSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 166 TSALDPETTASVLALLADINQRlNLTIVLITHQ-----LEVVKTICdhaaLLEQGEIVESGK 222
Cdd:TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQpsselFELFDKII----LMAEGRVAYLGS 250
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-218 |
5.60e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 77.61 E-value: 5.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAalRDYRL 80
Cdd:PRK11614 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA--KIMRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPLEIAgvPRAAREARVRELLALVD-LSEKAAAFPSQLSGGQKQRVGIARALAARPEV 159
Cdd:PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 160 LLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIV 218
Cdd:PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-226 |
7.38e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 79.66 E-value: 7.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 4 IEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLrtG 83
Cdd:PRK10762 7 LKGIDKAFPGV--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI--G 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNLLHARTVADNVAVPLEIAGV------PRAAREArvRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRfgridwKKMYAEA--DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 158 EVLLCDEATSAL-DPETTasvlALLADIN--QRLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:PRK10762 161 KVIIMDEPTDALtDTETE----SLFRVIRelKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
57-203 |
1.02e-16 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 79.69 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 57 SGRILVNGQDITQLNkaaLRDYRLRTGMIFQH---FNLlharTVADNVAVPLEIA---GVPRAAREARVRELLALV--DL 128
Cdd:PTZ00265 1276 SGKILLDGVDICDYN---LKDLRNLFSIVSQEpmlFNM----SIYENIKFGKEDAtreDVKRACKFAAIDEFIESLpnKY 1348
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 129 SEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVK 203
Cdd:PTZ00265 1349 DTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK 1423
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
21-203 |
1.28e-16 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 79.30 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNgqDITQLNKAALRDYRLRTGMIFQHfNLLHARTVADN 100
Cdd:PTZ00265 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN--DSHNLKDINLKWWRSKIGVVSQD-PLLFSNSIKNN 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 101 VAVPL---------------------------------------------EIAGVPRAAREARVRELLALVDLSEKA--- 132
Cdd:PTZ00265 480 IKYSLyslkdlealsnyynedgndsqenknkrnscrakcagdlndmsnttDSNELIEMRKNYQTIKDSEVVDVSKKVlih 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 133 ---AAFP-----------SQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQ 198
Cdd:PTZ00265 560 dfvSALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
|
....*
gi 490280290 199 LEVVK 203
Cdd:PTZ00265 640 LSTIR 644
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-227 |
1.40e-16 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 79.22 E-value: 1.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLR 81
Cdd:TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLR 716
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQH-FNLLHARTVADNVAVPLEIAGVPRAARearvrellalVDLSEKAAafpsQLSGGQKQRVGIARALAARPEVL 160
Cdd:TIGR00957 717 ENILFGKaLNEKYYQQVLEACALLPDLEILPSGDR----------TEIGEKGV----NLSGGQKQRVSLARAVYSNADIY 782
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 161 LCDEATSALDPETTASVLA-LLADINQRLNLTIVLITHQLEVVKTIcDHAALLEQGEIVESGKLADLL 227
Cdd:TIGR00957 783 LFDDPLSAVDAHVGKHIFEhVIGPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-214 |
2.07e-16 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 76.31 E-value: 2.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILvngqditqlnkaalRDYRL 80
Cdd:PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK--------------RNGKL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLlhartvadNVAVPLEIAGVPR---AAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARP 157
Cdd:PRK09544 68 RIGYVPQKLYL--------DTTLPLTVNRFLRlrpGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 158 EVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQ 214
Cdd:PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
34-198 |
2.79e-16 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 74.91 E-value: 2.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 34 ILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYrlrtgmiFQHFNLLH-ARTVADNVAVPLEIAGvpr 112
Cdd:PRK13539 33 LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY-------LGHRNAMKpALTVAENLEFWAAFLG--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 113 aAREARVRELLALVDLSEkAAAFPSQ-LSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADinqRLNL- 190
Cdd:PRK13539 103 -GEELDIAAALEAVGLAP-LAHLPFGyLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA---HLAQg 177
|
....*....
gi 490280290 191 -TIVLITHQ 198
Cdd:PRK13539 178 gIVIAATHI 186
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
17-227 |
2.90e-16 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 78.24 E-value: 2.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 17 PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaALRDYRLRTGMIFQ--------- 87
Cdd:PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---GLMDLRKVLGIIPQapvlfsgtv 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 88 HFNL--LHARTVADnVAVPLEIAGVPRAARearvRELLAL-VDLSEKAAAFpsqlSGGQKQRVGIARALAARPEVLLCDE 164
Cdd:PLN03130 1330 RFNLdpFNEHNDAD-LWESLERAHLKDVIR----RNSLGLdAEVSEAGENF----SVGQRQLLSLARALLRRSKILVLDE 1400
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 165 ATSALDPETTASVLALLADinQRLNLTIVLITHQLevvKTI--CDHAALLEQGEIVESGKLADLL 227
Cdd:PLN03130 1401 ATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRL---NTIidCDRILVLDAGRVVEFDTPENLL 1460
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
19-227 |
3.76e-16 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 75.65 E-value: 3.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLErPTSGRILVNGQDITQLNKAALRDYRlrtGMIFQHFNLLHARTVA 98
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARHR---AYLSQQQSPPFAMPVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 DNVAVPLEiAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARAL-----AARPE--VLLCDEATSALDP 171
Cdd:COG4138 88 QYLALHQP-AGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwpTINPEgqLLLLDEPMNSLDV 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 172 ETTASVLALLADINQrLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:COG4138 167 AQQAALDRLLRELCQ-QGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVM 221
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-227 |
5.61e-16 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 75.06 E-value: 5.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRClnLLERP----TSGRILVNGQDITQLNKaalr 76
Cdd:CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKV--IAGHPaykiLEGDILFKGESILDLEP---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DYRLRTGmIFQHFNLlhartvadnvavPLEIAGVP-----RAAREAR-----------------VRELLALVDLSEKaaa 134
Cdd:CHL00131 79 EERAHLG-IFLAFQY------------PIEIPGVSnadflRLAYNSKrkfqglpeldplefleiINEKLKLVGMDPS--- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 135 FPSQ-----LSGGQKQRVGIARALAARPEVLLCDEATSALDPE---TTASVLALLADINQrlnlTIVLITHQ---LEVVK 203
Cdd:CHL00131 143 FLSRnvnegFSGGEKKRNEILQMALLDSELAILDETDSGLDIDalkIIAEGINKLMTSEN----SIILITHYqrlLDYIK 218
|
250 260
....*....|....*....|....*.
gi 490280290 204 TicDHAALLEQGEIVESG--KLADLL 227
Cdd:CHL00131 219 P--DYVHVMQNGKIIKTGdaELAKEL 242
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-215 |
6.45e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 77.36 E-value: 6.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnkAALRDYRL 80
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL----TNISDVHQ 2012
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 161 LCDEATSALDPETTASVLALLADInQRLNLTIVLITHQLEVVKTICDHAALLEQG 215
Cdd:TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSI-IREGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
17-237 |
1.00e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 76.55 E-value: 1.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 17 PALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlnKAALRDYRlRTGMIFQHFNLLHART 96
Cdd:PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVA---KFGLTDLR-RVLSIIPQSPVLFSGT 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 97 VADNVAVPLE--IAGVPRAAREARVRELLALVDLSEKAAAFP--SQLSGGQKQRVGIARALAARPEVLLCDEATSALDPE 172
Cdd:PLN03232 1326 VRFNIDPFSEhnDADLWEALERAHIKDVIDRNPFGLDAEVSEggENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 173 TTASVLALLADinQRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL---VTPWSRLRQS 237
Cdd:PLN03232 1406 TDSLIQRTIRE--EFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLsrdTSAFFRMVHS 1470
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
19-240 |
4.24e-15 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 74.82 E-value: 4.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLnkaALRDYRLRTGMIFQHfNLLHARTVA 98
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY---GLRELRRQFSMIPQD-PVLFDGTVR 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 DNVAVPLEiagvpraAREARVRELLALVDLSEKAAAFP-----------SQLSGGQKQRVGIARALAARPE-VLLCDEAT 166
Cdd:PTZ00243 1402 QNVDPFLE-------ASSAEVWAALELVGLRERVASESegidsrvleggSNYSVGQRQLMCMARALLKKGSgFILMDEAT 1474
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 167 S----ALDPETTASVLALLAdinqrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLLVTpwsrlRQSLLH 240
Cdd:PTZ00243 1475 AnidpALDRQIQATVMSAFS------AYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN-----RQSIFH 1540
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
2-198 |
6.35e-15 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 70.26 E-value: 6.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSkTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRIlvngqditqlnkaalrDYRLR 81
Cdd:cd03223 1 IELENLS-LATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI----------------GMPEG 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFqhfnllhartvadnvavpleiagVPRaarearvRELLALVDLSEkAAAFPSQ--LSGGQKQRVGIARALAARPEV 159
Cdd:cd03223 64 EDLLF-----------------------LPQ-------RPYLPLGTLRE-QLIYPWDdvLSGGEQQRLAFARLLLHKPKF 112
|
170 180 190
....*....|....*....|....*....|....*....
gi 490280290 160 LLCDEATSALDPETTASVLALLadinQRLNLTIVLITHQ 198
Cdd:cd03223 113 VFLDEATSALDEESEDRLYQLL----KELGITVISVGHR 147
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-171 |
9.49e-15 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 73.62 E-value: 9.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLircLNLL---ERPTSGRILVNGQDITqlNKAALRDY 78
Cdd:NF033858 2 ARLEGVSHRYGKT--VALDDVSLDIPAGCMVGLIGPDGVGKSSL---LSLIagaRKIQQGRVEVLGGDMA--DARHRRAV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGMIFQHF--NLLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLsekaAAFPS----QLSGGQKQRVGIARA 152
Cdd:NF033858 75 CPRIAYMPQGLgkNLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGL----APFADrpagKLSGGMKQKLGLCCA 150
|
170
....*....|....*....
gi 490280290 153 LAARPEVLLCDEATSALDP 171
Cdd:NF033858 151 LIHDPDLLILDEPTTGVDP 169
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
6-220 |
9.70e-15 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 73.29 E-value: 9.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 6 GLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLeRPT---SGRILVNGQditqlnKAALRDYRL-- 80
Cdd:NF040905 6 GITKTFPGV--KALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGV-YPHgsyEGEILFDGE------VCRFKDIRDse 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGM--IFQHFNLLHARTVADNVAVPLEIA--GV-PRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAA 155
Cdd:NF040905 77 ALGIviIHQELALIPYLSIAENIFLGNERAkrGViDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 156 RPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVES 220
Cdd:NF040905 157 DVKLLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIET 220
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
20-219 |
1.58e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 72.89 E-value: 1.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 20 NDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDIT------QLNK--AALRDYRLRTGMiFQHFnl 91
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprspldAVKKgmAYITESRRDNGF-FPNF-- 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 92 lharTVADNVAVPLEIA--------GVPRAAREARV----RELLALvdlseKAAAFP---SQLSGGQKQRVGIARALAAR 156
Cdd:PRK09700 357 ----SIAQNMAISRSLKdggykgamGLFHEVDEQRTaenqRELLAL-----KCHSVNqniTELSGGNQQKVLISKWLCCC 427
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490280290 157 PEVLLCDEATSALDPETTASVLAL---LADINQrlnlTIVLITHQLEVVKTICDHAALLEQGEIVE 219
Cdd:PRK09700 428 PEVIIFDEPTRGIDVGAKAEIYKVmrqLADDGK----VILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-197 |
2.50e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 72.28 E-value: 2.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 3 TIEGLSKTYAGtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRilvngqditqlnkaALRDYRLRT 82
Cdd:TIGR03719 6 TMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGE--------------ARPQPGIKV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 83 GMIFQHFNLLHARTVADNV--AVPLEIAGVPR------------------AAREARVRELLALVDLS------EKAA--- 133
Cdd:TIGR03719 71 GYLPQEPQLDPTKTVRENVeeGVAEIKDALDRfneisakyaepdadfdklAAEQAELQEIIDAADAWdldsqlEIAMdal 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 134 ------AFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLadinQRLNLTIVLITH 197
Cdd:TIGR03719 151 rcppwdADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHL----QEYPGTVVAVTH 216
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
21-224 |
2.82e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 72.01 E-value: 2.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 21 DIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAAlrdyRLRTGMIF-----QHFNLLHAR 95
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ----RLARGLVYlpedrQSSGLYLDA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVaVPLEIAGVP---RAAREARVRELL--AL-VDLSEKAAAFPSqLSGGQKQRVGIARALAARPEVLLCDEATSAL 169
Cdd:PRK15439 357 PLAWNV-CALTHNRRGfwiKPARENAVLERYrrALnIKFNHAEQAART-LSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490280290 170 DPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIveSGKLA 224
Cdd:PRK15439 435 DVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEI--SGALT 486
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
19-230 |
3.22e-14 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 72.12 E-value: 3.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLRTGMIFqhFNLLHARTVA 98
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILF--FDEEDAARLA 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 DNVAVpleiagvprAAREARVRELLALVD--LSEKAAafpsQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTAS 176
Cdd:PTZ00243 754 DAVRV---------SQLEADLAQLGGGLEteIGEKGV----NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGER 820
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 177 V-----LALLAdinqrlNLTIVLITHQLEVVkTICDHAALLEQGEIVESGKLADLLVTP 230
Cdd:PTZ00243 821 VveecfLGALA------GKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFMRTS 872
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-240 |
4.45e-14 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 71.87 E-value: 4.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRC-LNLLErpTSGRILVNGqdiTQLNKAALRDYRL 80
Cdd:TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAlLRLLS--TEGEIQIDG---VSWNSVTLQTWRK 1292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFNLLHArTVADNVAvPLEiagvpRAAREA--RVRELLALVDLSEKaaaFPSQ-----------LSGGQKQRV 147
Cdd:TIGR01271 1293 AFGVIPQKVFIFSG-TFRKNLD-PYE-----QWSDEEiwKVAEEVGLKSVIEQ---FPDKldfvlvdggyvLSNGHKQLM 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 148 GIARALAARPEVLLCDEATSALDPETTASVLALLAdiNQRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLL 227
Cdd:TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK--QSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLL 1439
|
250
....*....|...
gi 490280290 228 vTPWSRLRQSLLH 240
Cdd:TIGR01271 1440 -NETSLFKQAMSA 1451
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
2-227 |
1.37e-13 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 68.40 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTL----IRCLNLLErptsGRILVNGQDITQLnkaALRD 77
Cdd:cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLslafFRMVDIFD----GKIVIDGIDISKL---PLHT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 78 YRLRTGMIFQ---------HFNLLHARTVADNvavpleiagvpraareaRVRELLALVDLSEKAAAFPSQL--------- 139
Cdd:cd03288 93 LRSRLSIILQdpilfsgsiRFNLDPECKCTDD-----------------RLWEALEIAQLKNMVKSLPGGLdavvtegge 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 140 --SGGQKQRVGIARALAARPEVLLCDEATSALDPET----TASVLALLADinqrlnLTIVLITHQLEVVKTiCDHAALLE 213
Cdd:cd03288 156 nfSVGQRQLFCLARAFVRKSSILIMDEATASIDMATenilQKVVMTAFAD------RTVVTIAHRVSTILD-ADLVLVLS 228
|
250
....*....|....
gi 490280290 214 QGEIVESGKLADLL 227
Cdd:cd03288 229 RGILVECDTPENLL 242
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
16-226 |
1.40e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 70.15 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLnLLERPTsgrilVNGQDITQLNKAAlrdYRLRTGMIFQhfnllhaR 95
Cdd:PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM-LGELPP-----RSDASVVIRGTVA---YVPQVSWIFN-------A 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNV--AVPLEIAGVPRAAREARVRELLALV---DLSEKAAAfPSQLSGGQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:PLN03130 694 TVRDNIlfGSPFDPERYERAIDVTALQHDLDLLpggDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 171 PETTASVLALLadINQRL-NLTIVLITHQLEVVKTIcDHAALLEQGEIVESGKLADL 226
Cdd:PLN03130 773 AHVGRQVFDKC--IKDELrGKTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEEL 826
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
15-221 |
1.73e-13 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 67.29 E-value: 1.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLerpTSGRILVNGqDITqlnkaalrdYRlrtGMIFQHFNLLHA 94
Cdd:cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR---TEGNVSVEG-DIH---------YN---GIPYKEFAEKYP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 95 RTVADNVAVPLEIAgvpraarEARVRELLALVdLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETT 174
Cdd:cd03233 83 GEIIYVSEEDVHFP-------TLTVRETLDFA-LRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 490280290 175 ---ASVLALLADInqrLNLTIVLITHQ--LEVVKTIcDHAALLEQGEIVESG 221
Cdd:cd03233 155 leiLKCIRTMADV---LKTTTFVSLYQasDEIYDLF-DKVLVLYEGRQIYYG 202
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1-227 |
2.03e-13 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 68.31 E-value: 2.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLskTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCL--NLLERPTS------GRILVNGQDITQLNk 72
Cdd:PRK13547 1 MLTADHL--HVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALagDLTGGGAPrgarvtGDVTLNGEPLAAID- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 73 aALRDYRLRtGMIFQHFNLLHARTVADNVAVPLEIAGVPRAAREARVREL----LALVDLSEKAAAFPSQLSGGQKQRVG 148
Cdd:PRK13547 78 -APRLARLR-AVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIawqaLALAGATALVGRDVTTLSGGELARVQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 149 IARALA---------ARPEVLLCDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLEQGEIVE 219
Cdd:PRK13547 156 FARVLAqlwpphdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA 235
|
....*...
gi 490280290 220 SGKLADLL 227
Cdd:PRK13547 236 HGAPADVL 243
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
15-198 |
3.75e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 66.36 E-value: 3.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkaaLRDYRLRTGMIFQHFNLLHA 94
Cdd:cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF-----QRDSIARGLLYLGHAPGIKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 95 R-TVADNVAVPLEIAGvpraarEARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPET 173
Cdd:cd03231 87 TlSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160
|
170 180
....*....|....*....|....*
gi 490280290 174 TASVLALLADINQRLNLtIVLITHQ 198
Cdd:cd03231 161 VARFAEAMAGHCARGGM-VVLTTHQ 184
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
18-227 |
4.44e-13 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 68.38 E-value: 4.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQditqlnkAALrdyrlrtgmIFQHFNLLHARTV 97
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS-------AAL---------IAISSGLNGQLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 ADNVavplEIAGVPRAAREARVRELLALVDLSEKAAAFPSQ----LSGGQKQRVGIARALAARPEVLLCDEATSALDPET 173
Cdd:PRK13545 103 IENI----ELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQpvktYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490280290 174 TASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK13545 179 TKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVV 231
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
18-227 |
5.91e-13 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 66.76 E-value: 5.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGqDITQLNKAALRDYRLrTGMifqhfnllhartv 97
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAISAGLSGQL-TGI------------- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 aDNVAVPLEIAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASV 177
Cdd:PRK13546 104 -ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 490280290 178 LALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK13546 183 LDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
13-200 |
1.78e-12 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 64.66 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 13 GTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDY-RLRTGMIFQHFNL 91
Cdd:cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRnRYSVAYAAQKPWL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 92 LHArTVADNVavpleIAGVP-RAAREARVRELLAL---VDLsekaAAFPSQ---------LSGGQKQRVGIARALAARPE 158
Cdd:cd03290 91 LNA-TVEENI-----TFGSPfNKQRYKAVTDACSLqpdIDL----LPFGDQteigerginLSGGQRQRICVARALYQNTN 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 490280290 159 VLLCDEATSALDPETT-----ASVLALLADiNQRlnlTIVLITHQLE 200
Cdd:cd03290 161 IVFLDDPFSALDIHLSdhlmqEGILKFLQD-DKR---TLVLVTHKLQ 203
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
16-225 |
2.38e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 66.44 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCL--NLLERPTSGRILVNGQDITqlnKAALRdyrlRTGMIFQHfNLLH 93
Cdd:PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALagRIQGNNFTGTILANNRKPT---KQILK----RTGFVTQD-DILY 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 94 ARTVADNVAVPLEIAGVPRA--------AREARVREL-LALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDE 164
Cdd:PLN03211 153 PHLTVRETLVFCSLLRLPKSltkqekilVAESVISELgLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 165 ATSALDPETTASVLALLADINQRlNLTIVLITHQLEV-VKTICDHAALLEQGEIVESGKLAD 225
Cdd:PLN03211 233 PTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSrVYQMFDSVLVLSEGRCLFFGKGSD 293
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
15-198 |
3.57e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 63.67 E-value: 3.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItqlnkAALRDYRLRTGMIFQHFNLLHA 94
Cdd:PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI-----RRQRDEYHQDLLYLGHQPGIKT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 95 R-TVADNVAVPLEIAGVpraAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPET 173
Cdd:PRK13538 88 ElTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164
|
170 180
....*....|....*....|....*
gi 490280290 174 TASVLALLADINQRlNLTIVLITHQ 198
Cdd:PRK13538 165 VARLEALLAQHAEQ-GGMVILTTHQ 188
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-173 |
3.69e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 65.73 E-value: 3.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVnGQDItqlnKAALRDYrlr 81
Cdd:TIGR03719 323 IEAENLTKAFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV----KLAYVDQ--- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 tgmifQHFNLLHARTVADNVAVPLEIAGVprAAREARVRELLALVDLS----EKAAafpSQLSGGQKQRVGIARALAARP 157
Cdd:TIGR03719 393 -----SRDALDPNKTVWEEISGGLDIIKL--GKREIPSRAYVGRFNFKgsdqQKKV---GQLSGGERNRVHLAKTLKSGG 462
|
170
....*....|....*.
gi 490280290 158 EVLLCDEATSALDPET 173
Cdd:TIGR03719 463 NVLLLDEPTNDLDVET 478
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
3-197 |
3.81e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 65.53 E-value: 3.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 3 TIEGLSKTYaGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGR-ILVNGqditqlnkaalrdyrLR 81
Cdd:PRK11819 8 TMNRVSKVV-PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEaRPAPG---------------IK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIFQHFNLLHARTVADNV--AVPLEIAGVPR------------------AAREARVRELLALVDLS------EKAA-- 133
Cdd:PRK11819 72 VGYLPQEPQLDPEKTVRENVeeGVAEVKAALDRfneiyaayaepdadfdalAAEQGELQEIIDAADAWdldsqlEIAMda 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 134 -------AFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPEttaSVLAL---LadinQRLNLTIVLITH 197
Cdd:PRK11819 152 lrcppwdAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE---SVAWLeqfL----HDYPGTVVAVTH 218
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-240 |
1.17e-11 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 63.33 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRC-LNLLErpTSGRILVNGqdiTQLNKAALRDYRL 80
Cdd:cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAfLRLLN--TEGDIQIDG---VSWNSVPLQKWRK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 81 RTGMIFQHFnLLHARTVADNvavpLEIAGVPRAAREARVRELLALVDLSEKaaaFPSQ-----------LSGGQKQRVGI 149
Cdd:cd03289 78 AFGVIPQKV-FIFSGTFRKN----LDPYGKWSDEEIWKVAEEVGLKSVIEQ---FPGQldfvlvdggcvLSHGHKQLMCL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 150 ARALAARPEVLLCDEATSALDPETTASVLALLAdiNQRLNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADLLvT 229
Cdd:cd03289 150 ARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK--QAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLL-N 225
|
250
....*....|.
gi 490280290 230 PWSRLRQSLLH 240
Cdd:cd03289 226 EKSHFKQAISP 236
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
32-217 |
1.84e-11 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 63.76 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 32 YGILGRSGAGKSTLIRCL-NLLErPTSGRI-LVNGQDITQL--NKAALRDYRLRTGMIFQHFNLLHART----------- 96
Cdd:PRK15064 30 YGLIGANGCGKSTFMKILgGDLE-PSAGNVsLDPNERLGKLrqDQFAFEEFTVLDTVIMGHTELWEVKQerdriyalpem 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 97 -------VADNVAVPLEIAGVpraAREARVRELLALVDLSEKAAAFP-SQLSGGQKQRVGIARALAARPEVLLCDEATSA 168
Cdd:PRK15064 109 seedgmkVADLEVKFAEMDGY---TAEARAGELLLGVGIPEEQHYGLmSEVAPGWKLRVLLAQALFSNPDILLLDEPTNN 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 490280290 169 LDPETtasvLALLADI-NQRlNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:PRK15064 186 LDINT----IRWLEDVlNER-NSTMIIISHDRHFLNSVCTHMADLDYGEL 230
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
14-226 |
2.62e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 63.46 E-value: 2.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 14 TGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRC-LNLLERPTSGRILVNGQditqlnkaalRDYRLRTGMIFQhfnll 92
Cdd:PLN03232 628 TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAmLGELSHAETSSVVIRGS----------VAYVPQVSWIFN----- 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 93 haRTVADNV--AVPLEIAGVPRAAREARVR---ELLALVDLSEKAAAfPSQLSGGQKQRVGIARALAARPEVLLCDEATS 167
Cdd:PLN03232 693 --ATVRENIlfGSDFESERYWRAIDVTALQhdlDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLS 769
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 168 ALDPETTASVLAllADINQRLN-LTIVLITHQLEVVKTIcDHAALLEQGEIVESGKLADL 226
Cdd:PLN03232 770 ALDAHVAHQVFD--SCMKDELKgKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAEL 826
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
112-226 |
2.77e-11 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 62.83 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 112 RAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADInQRLNLT 191
Cdd:NF000106 118 RKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSM-VRDGAT 196
|
90 100 110
....*....|....*....|....*....|....*
gi 490280290 192 IVLITHQLEVVKTICDHAALLEQGEIVESGKLADL 226
Cdd:NF000106 197 VLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
15-226 |
3.37e-11 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 62.18 E-value: 3.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGqditqlnkaalrdyrlRTGMIFQhFNLLHA 94
Cdd:cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------------RISFSSQ-FSWIMP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 95 RTVADNVavpleIAGVprAAREARVRELLALVDLSEKAAAFPSQ-----------LSGGQKQRVGIARALAARPEVLLCD 163
Cdd:cd03291 112 GTIKENI-----IFGV--SYDEYRYKSVVKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVYKDADLYLLD 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 164 EATSALDPETT-----ASVLALLAdinqrlNLTIVLITHQLEVVKtICDHAALLEQGEIVESGKLADL 226
Cdd:cd03291 185 SPFGYLDVFTEkeifeSCVCKLMA------NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 245
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
12-198 |
4.38e-11 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 60.33 E-value: 4.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 12 AGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNllERPTS----GRILVNGQDITQlnkaalrDYRLRTGMIFQ 87
Cdd:cd03232 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA--GRKTAgvitGEILINGRPLDK-------NFQRSTGYVEQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 88 ---HFNLLhartvadNVAVPLEIAGVPRAarearvrellalvdlsekaaafpsqLSGGQKQRVGIARALAARPEVLLCDE 164
Cdd:cd03232 87 qdvHSPNL-------TVREALRFSALLRG-------------------------LSVEQRKRLTIGVELAAKPSILFLDE 134
|
170 180 190
....*....|....*....|....*....|....*..
gi 490280290 165 ATSALDPETTASVLAL---LADINQrlnlTIVLITHQ 198
Cdd:cd03232 135 PTSGLDSQAAYNIVRFlkkLADSGQ----AILCTIHQ 167
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
25-227 |
4.79e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 61.10 E-value: 4.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 25 QIPKGAIYGILGRSGAGKSTLIRCL-NLLerPTSGRILVNGQDITQLNKAALRDYRlrtGMIFQHFNLLHARTVADNVAV 103
Cdd:PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMaGLL--PGSGSIQFAGQPLEAWSAAELARHR---AYLSQQQTPPFAMPVFQYLTL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 104 PLEiAGVPRAAREARVRELLALVDLSEKAAAFPSQLSGGQKQRVGIARAL-----AARPE--VLLCDEATSALDpetTAS 176
Cdd:PRK03695 93 HQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVlqvwpDINPAgqLLLLDEPMNSLD---VAQ 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 490280290 177 VLALLADINQ--RLNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK03695 169 QAALDRLLSElcQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
29-198 |
6.02e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 62.43 E-value: 6.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 29 GAIYGILGRSGAGKSTLIRCLNllERPTSGRI-----LVNGQDITQlnkaalrDYRLRTGMIFQhfNLLHARTVadNVAV 103
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLA--ERVTTGVItggdrLVNGRPLDS-------SFQRSIGYVQQ--QDLHLPTS--TVRE 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 104 PLEIAG-------VPRAAREARVRELLALVDLSEKAAAF----PSQLSGGQKQRVGIARALAARPEVLL-CDEATSALDP 171
Cdd:TIGR00956 856 SLRFSAylrqpksVSKSEKMEYVEEVIKLLEMESYADAVvgvpGEGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDS 935
|
170 180 190
....*....|....*....|....*....|
gi 490280290 172 ETTASVLAL---LADINQrlnlTIVLITHQ 198
Cdd:TIGR00956 936 QTAWSICKLmrkLADHGQ----AILCTIHQ 961
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-221 |
6.07e-11 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 60.96 E-value: 6.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYAGTgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLE--RPTSGRILVNGQDITQLNKAAlrdy 78
Cdd:PRK09580 1 MLSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPED---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 rlRTG----MIFQHfnllhartvadnvavPLEIAGVP---------RAAREARVRELLALVD----LSEKAAAF--PSQL 139
Cdd:PRK09580 75 --RAGegifMAFQY---------------PVEIPGVSnqfflqtalNAVRSYRGQEPLDRFDfqdlMEEKIALLkmPEDL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 140 ---------SGGQKQRVGIARALAARPEVLLCDEATSALDPETTASV---LALLADINQrlnlTIVLITHQLEVVKTI-C 206
Cdd:PRK09580 138 ltrsvnvgfSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVadgVNSLRDGKR----SFIIVTHYQRILDYIkP 213
|
250
....*....|....*
gi 490280290 207 DHAALLEQGEIVESG 221
Cdd:PRK09580 214 DYVHVLYQGRIVKSG 228
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
18-197 |
1.11e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 61.14 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNkaaLRDYRLRTGMIFQHFNLLHaRTv 97
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ---PEDYRKLFSAVFTDFHLFD-QL- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 adnvavpLEIAGVPraAREARVRELLALVDLSEKAA-----AFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPE 172
Cdd:PRK10522 413 -------LGPEGKP--ANPALVEKWLERLKMAHKLEledgrISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483
|
170 180
....*....|....*....|....*
gi 490280290 173 TTASVLALLADINQRLNLTIVLITH 197
Cdd:PRK10522 484 FRREFYQVLLPLLQEMGKTIFAISH 508
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
16-198 |
2.21e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 58.81 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDItqlnKAALRDYRLRTGMIFQHFNLLHAR 95
Cdd:PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI----KKDLCTYQKQLCFVGHRSGINPYL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEIagvprAAREARVRELLALVDLsEKAAAFP-SQLSGGQKQRVGIARALAARPEVLLCDEATSALDPEtt 174
Cdd:PRK13540 90 TLRENCLYDIHF-----SPGAVGITELCRLFSL-EHLIDYPcGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL-- 161
|
170 180
....*....|....*....|....*.
gi 490280290 175 aSVLALLADI--NQRLNLTIVLITHQ 198
Cdd:PRK13540 162 -SLLTIITKIqeHRAKGGAVLLTSHQ 186
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
24-189 |
3.79e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 59.80 E-value: 3.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 24 LQIPK-GAIYGILGRSGAGKSTLIRCLnllerptSGRILVN-GQDITQLNK-AALRDYRlrtGM-IFQHFnllhaRTVAD 99
Cdd:COG1245 93 LPVPKkGKVTGILGPNGIGKSTALKIL-------SGELKPNlGDYDEEPSWdEVLKRFR---GTeLQDYF-----KKLAN 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 100 N---VAV-PLEIAGVPRAAReARVRELLALVD----LSEKAAAFP---------SQLSGGQKQRVGIARALAARPEVLLC 162
Cdd:COG1245 158 GeikVAHkPQYVDLIPKVFK-GTVRELLEKVDergkLDELAEKLGlenildrdiSELSGGELQRVAIAAALLRDADFYFF 236
|
170 180
....*....|....*....|....*..
gi 490280290 163 DEATSALdpettasvlallaDINQRLN 189
Cdd:COG1245 237 DEPSSYL-------------DIYQRLN 250
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-189 |
4.20e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 59.44 E-value: 4.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 24 LQIPK-GAIYGILGRSGAGKSTLIRCLnllerptSGRILVN-GQDITQLNKAALRDYRLRTGMiFQHFNLLHARTVadNV 101
Cdd:PRK13409 93 LPIPKeGKVTGILGPNGIGKTTAVKIL-------SGELIPNlGDYEEEPSWDEVLKRFRGTEL-QNYFKKLYNGEI--KV 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 102 AV-PLEIAGVPRAAReARVRELLALVD----LSEKAAAFP---------SQLSGGQKQRVGIARALAARPEVLLCDEATS 167
Cdd:PRK13409 163 VHkPQYVDLIPKVFK-GKVRELLKKVDergkLDEVVERLGlenildrdiSELSGGELQRVAIAAALLRDADFYFFDEPTS 241
|
170 180
....*....|....*....|..
gi 490280290 168 ALdpettasvlallaDINQRLN 189
Cdd:PRK13409 242 YL-------------DIRQRLN 250
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
15-226 |
1.21e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 58.38 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGqditqlnkaalrdyrlRTGMIFQhFNLLHA 94
Cdd:TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------------RISFSPQ-TSWIMP 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 95 RTVADNVavpleIAGVprAAREARVRELLALVDLSEKAAAFPSQ-----------LSGGQKQRVGIARALAARPEVLLCD 163
Cdd:TIGR01271 501 GTIKDNI-----IFGL--SYDEYRYTSVIKACQLEEDIALFPEKdktvlgeggitLSGGQRARISLARAVYKDADLYLLD 573
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 164 EATSALDPETTASVL-----ALLAdinqrlNLTIVLITHQLEVVKTiCDHAALLEQGEIVESGKLADL 226
Cdd:TIGR01271 574 SPFTHLDVVTEKEIFesclcKLMS------NKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSEL 634
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-173 |
2.33e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 57.44 E-value: 2.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYAGtgRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNgqDITQL-----NKAALR 76
Cdd:PRK11819 325 IEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG--ETVKLayvdqSRDALD 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 77 DyrlrtgmifqhfnllhARTVADNVAVPLEIAGVprAAREARVRellALVdlsekaAAF----PSQ------LSGGQKQR 146
Cdd:PRK11819 401 P----------------NKTVWEEISGGLDIIKV--GNREIPSR---AYV------GRFnfkgGDQqkkvgvLSGGERNR 453
|
170 180
....*....|....*....|....*..
gi 490280290 147 VGIARALAARPEVLLCDEATSALDPET 173
Cdd:PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVET 480
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
28-197 |
3.05e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 3.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 28 KGAIYGILGRSGAGKSTLIRCL-NLLERPTSGRILVNGQDItqlnkaalrdyrlrtgmifqhfnllhartvadnvavple 106
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALaRELGPPGGGVIYIDGEDI--------------------------------------- 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 107 iagvpraarearvRELLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLAL-----L 181
Cdd:smart00382 42 -------------LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLeelrlL 108
|
170
....*....|....*.
gi 490280290 182 ADINQRLNLTIVLITH 197
Cdd:smart00382 109 LLLKSEKNLTVILTTN 124
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
18-221 |
3.36e-09 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 54.64 E-value: 3.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 18 ALNDIALQIPKGAIYGILGRSGAGKSTLirCLNLLERPTSGRilvngqditqLNKAALRDYRLRTGMIFQHFNLlhartv 97
Cdd:cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTL--VNEGLYASGKAR----------LISFLPKFSRNKLIFIDQLQFL------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 adnVAVPLEIAGVPRAArearvrellalvdlsekaaafpSQLSGGQKQRVGIARALAARPE--VLLCDEATSALDPETTA 175
Cdd:cd03238 72 ---IDVGLGYLTLGQKL----------------------STLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDIN 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490280290 176 SVLALLADINQrLNLTIVLITHQLEVVKT---ICD--HAALLEQGEIVESG 221
Cdd:cd03238 127 QLLEVIKGLID-LGNTVILIEHNLDVLSSadwIIDfgPGSGKSGGKVVFSG 176
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
16-217 |
7.69e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 55.60 E-value: 7.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCL-NLLERPTSGRILVNGQDITQLNKA-ALR-------DYRLRTGMIF 86
Cdd:TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALfGAYPGKFEGNVFINGKPVDIRNPAqAIRagiamvpEDRKRHGIVP 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 87 QhfnllhaRTVADNV--AVPLEIAGVPRAAREARVRELLALVDLSEKAAAFP----SQLSGGQKQRVGIARALAARPEVL 160
Cdd:TIGR02633 353 I-------LGVGKNItlSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPflpiGRLSGGNQQKAVLAKMLLTNPRVL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 161 LCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
19-198 |
1.35e-08 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 55.14 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLN--------LLERPTSGRILVNGQditqlnkaalRDYRLRtgmifqhfn 90
Cdd:TIGR00954 468 IESLSFEVPSGNNLLICGPNGCGKSSLFRILGelwpvyggRLTKPAKGKLFYVPQ----------RPYMTL--------- 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 llhaRTVADNVAVPLEIAGVP-RAAREARVRELLALVDLS---EKAAAFPS------QLSGGQKQRVGIARALAARPEVL 160
Cdd:TIGR00954 529 ----GTLRDQIIYPDSSEDMKrRGLSDKDLEQILDNVQLThilEREGGWSAvqdwmdVLSGGEKQRIAMARLFYHKPQFA 604
|
170 180 190
....*....|....*....|....*....|....*...
gi 490280290 161 LCDEATSALDPETTASVLALLadinQRLNLTIVLITHQ 198
Cdd:TIGR00954 605 ILDECTSAVSVDVEGYMYRLC----REFGITLFSVSHR 638
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-197 |
1.75e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.96 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEG--LSKTYAgtgrPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLN---LLErptSGRILVNgQD--ITQLNKA 73
Cdd:PRK11147 3 LISIHGawLSFSDA----PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNgevLLD---DGRIIYE-QDliVARLQQD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 74 ALRDyrlRTGMIF-----------QHFNLLHArtVADNVAVPLEIAGVPRAAR-------------EARVRELLALVDLS 129
Cdd:PRK11147 75 PPRN---VEGTVYdfvaegieeqaEYLKRYHD--ISHLVETDPSEKNLNELAKlqeqldhhnlwqlENRINEVLAQLGLD 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 130 ekAAAFPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQrlnlTIVLITH 197
Cdd:PRK11147 150 --PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG----SIIFISH 211
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
7-217 |
1.81e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 54.79 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 7 LSKTYAGTG-RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRI-LVNGqditqlnkaalrdyrLRTGM 84
Cdd:PRK10636 315 MEKVSAGYGdRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIgLAKG---------------IKLGY 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 85 IFQHfNLLHARtvADNVAVPLEIAGVPRAArEARVRELLALVDLS-EKAAAFPSQLSGGQKQRVGIARALAARPEVLLCD 163
Cdd:PRK10636 380 FAQH-QLEFLR--ADESPLQHLARLAPQEL-EQKLRDYLGGFGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD 455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490280290 164 EATSALDPETTASVLALLADINQRLnltiVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:PRK10636 456 EPTNHLDLDMRQALTEALIDFEGAL----VVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
19-172 |
2.24e-08 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 53.57 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIY-----GILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDIT---QLNKA--ALRDYRLRTGMIFQH 88
Cdd:cd03237 10 LGEFTLEVEGGSISeseviGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSykpQYIKAdyEGTVRDLLSSITKDF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 89 FNLLHARTvadNVAVPLEIAGVpraaREARVREllalvdlsekaaafpsqLSGGQKQRVGIARALAARPEVLLCDEATSA 168
Cdd:cd03237 90 YTHPYFKT---EIAKPLQIEQI----LDREVPE-----------------LSGGELQRVAIAACLSKDADIYLLDEPSAY 145
|
....
gi 490280290 169 LDPE 172
Cdd:cd03237 146 LDVE 149
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-224 |
3.26e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 53.76 E-value: 3.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSktyagtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQditQLNKAALRDyRLR 81
Cdd:PRK11288 258 LRLDGLK------GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK---PIDIRSPRD-AIR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 TGMIF-----QHFNLLHARTVADNVAVpleiagvprAAREARVRELLALVDLSEKAAA----------FPS------QLS 140
Cdd:PRK11288 328 AGIMLcpedrKAEGIIPVHSVADNINI---------SARRHHLRAGCLINNRWEAENAdrfirslnikTPSreqlimNLS 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 141 GGQKQRVGIARALAARPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIveS 220
Cdd:PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRI--A 475
|
....
gi 490280290 221 GKLA 224
Cdd:PRK11288 476 GELA 479
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
15-170 |
3.66e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 53.71 E-value: 3.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 15 GRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLE---RPTSGRIL-----VNGQDITQLNKAALRDYRlRTGMIF 86
Cdd:PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAidgIPKNCQILhveqeVVGDDTTALQCVLNTDIE-RTQLLE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 87 QHFNLLHARTVADNVAVPL-----EIAGVPRAAREARVREL---LALVDL--SEKAAA-------FPSQL--------SG 141
Cdd:PLN03073 268 EEAQLVAQQRELEFETETGkgkgaNKDGVDKDAVSQRLEEIykrLELIDAytAEARAAsilaglsFTPEMqvkatktfSG 347
|
170 180
....*....|....*....|....*....
gi 490280290 142 GQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:PLN03073 348 GWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
11-197 |
5.59e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.42 E-value: 5.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 11 YAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNgqdiTQLNKAALRDYRLrtgmifqhfN 90
Cdd:PRK11147 327 YQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG----TKLEVAYFDQHRA---------E 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 LLHARTVADNVA---VPLEIAGVPRAArearvreLLALVDL--SEKAAAFPSQ-LSGGQKQRVGIARaLAARPEVLLC-D 163
Cdd:PRK11147 394 LDPEKTVMDNLAegkQEVMVNGRPRHV-------LGYLQDFlfHPKRAMTPVKaLSGGERNRLLLAR-LFLKPSNLLIlD 465
|
170 180 190
....*....|....*....|....*....|....
gi 490280290 164 EATSALDPETtasvLALLADINQRLNLTIVLITH 197
Cdd:PRK11147 466 EPTNDLDVET----LELLEELLDSYQGTVLLVSH 495
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
10-172 |
7.19e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 51.77 E-value: 7.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 10 TYAGTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALRDYRLRTGMIFQ-- 87
Cdd:PRK13543 18 AFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKAdl 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 88 ------HF-NLLHARTVADnvavpleiagVPRAArearvrelLALVDLSEKAAAFPSQLSGGQKQRVGIARALAARPEVL 160
Cdd:PRK13543 98 stlenlHFlCGLHGRRAKQ----------MPGSA--------LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLW 159
|
170
....*....|..
gi 490280290 161 LCDEATSALDPE 172
Cdd:PRK13543 160 LLDEPYANLDLE 171
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
17-217 |
1.07e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 52.31 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 17 PALNDIALQIPKGAIYGILGRSGAGKSTLIRCL-NLLERpTSGRILVNGQDITQLNKAAlrdyRLRTGMIF-----QHFN 90
Cdd:PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLyGALPR-TSGYVTLDGHEVVTRSPQD----GLANGIVYisedrKRDG 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 91 LLHARTVADNVAVPLEIAGVPRAAREARVRELLALVDLSEkaaAF----PSQ------LSGGQKQRVGIARALAARPEVL 160
Cdd:PRK10762 341 LVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR---LFniktPSMeqaiglLSGGNQQKVAIARGLMTRPKVL 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 161 LCDEATSALDPETTASVLALladINQ--RLNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:PRK10762 418 ILDEPTRGVDVGAKKEIYQL---INQfkAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
23-227 |
1.57e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 51.94 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 23 ALQIPKGAIYGILGRSGAGKSTLIRCLnllerptSGR-ILVNGQDITQLNKAALRDYRLRTGMI---FQHFN--LLHA-- 94
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARAL-------AGElPLLSGERQSQFSHITRLSFEQLQKLVsdeWQRNNtdMLSPge 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 95 ----RTVADnvaVPLEiaGVPRAAREARVRELLALVDLSEKAaaFpSQLSGGQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:PRK10938 96 ddtgRTTAE---IIQD--EVKDPARCEQLAQQFGITALLDRR--F-KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 171 PETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEIVESGKLADLL 227
Cdd:PRK10938 168 VASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
24-207 |
5.00e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 49.67 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 24 LQIPK-GAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNG--QDI-TQLNKAALRDY--RLRTGMIfqhfnllhartv 97
Cdd:cd03236 20 LPVPReGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPdwDEIlDEFRGSELQNYftKLLEGDV------------ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 98 aDNVAVPLEIAGVPRAAReARVRELLALVD-------LSEKAAAFP------SQLSGGQKQRVGIARALAARPEVLLCDE 164
Cdd:cd03236 88 -KVIVKPQYVDLIPKAVK-GKVGELLKKKDergkldeLVDQLELRHvldrniDQLSGGELQRVAIAAALARDADFYFFDE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 490280290 165 ATSALDPETTASVLALLADINQRLNLTIVlITHQLEVVKTICD 207
Cdd:cd03236 166 PSSYLDIKQRLNAARLIRELAEDDNYVLV-VEHDLAVLDYLSD 207
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
19-182 |
5.15e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 48.71 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQLNKAALrdyrlrtGMIFQHFNLLHARTVA 98
Cdd:PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC-------TYIGHNLGLKLEMTVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 99 DNVAVPLEI----AGVPRAAREARVRELlalvdLSEKAAafpsQLSGGQKQRVGIARALAARPEVLLCDEATSALDPETT 174
Cdd:PRK13541 89 ENLKFWSEIynsaETLYAAIHYFKLHDL-----LDEKCY----SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159
|
....*...
gi 490280290 175 ASVLALLA 182
Cdd:PRK13541 160 DLLNNLIV 167
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
14-217 |
1.46e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.77 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 14 TGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCL-NLLERPTSGRILVNGQDITQLNKA-ALR-------DYRLRTGM 84
Cdd:PRK13549 273 PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLfGAYPGRWEGEIFIDGKPVKIRNPQqAIAqgiamvpEDRKRDGI 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 85 IFQhfnllhaRTVADNVAVP----LEIAGVPRAAREAR-VRELLAlvDLSEKAAAfP----SQLSGGQKQRVGIARALAA 155
Cdd:PRK13549 353 VPV-------MGVGKNITLAaldrFTGGSRIDDAAELKtILESIQ--RLKVKTAS-PelaiARLSGGNQQKAVLAKCLLL 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490280290 156 RPEVLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGEI 217
Cdd:PRK13549 423 NPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
34-184 |
2.53e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.57 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 34 ILGRSGAGKSTLIRCLNL----LERPTSGRILVNGQDITQLNKaalrdyRLRTGMIFQ-----HFNLLharTVADNV--- 101
Cdd:TIGR00956 92 VLGRPGSGCSTLLKTIASntdgFHIGVEGVITYDGITPEEIKK------HYRGDVVYNaetdvHFPHL---TVGETLdfa 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 102 ----AVPLEIAGVPRAAREARVREL-LALVDLSEKAAA-----FPSQLSGGQKQRVGIARALAARPEVLLCDEATSALDP 171
Cdd:TIGR00956 163 arckTPQNRPDGVSREEYAKHIADVyMATYGLSHTRNTkvgndFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
170
....*....|....*.
gi 490280290 172 ETT---ASVLALLADI 184
Cdd:TIGR00956 243 ATAlefIRALKTSANI 258
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-60 |
7.82e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.42 E-value: 7.82e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYagTGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCL-NLLErPTSGRI 60
Cdd:PRK15064 320 LEVENLTKGF--DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLvGELE-PDSGTV 376
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
16-222 |
1.94e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 45.49 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITqlNKAALRdyrlrtgMIFQHFNLLHAR 95
Cdd:PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN--NHNANE-------AINHGFALVTEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 96 TVADNVAVPLEIAGVPRAAREARVRELLALVD-----------LSEKAAAFPSQ------LSGGQKQRVGIARALAARPE 158
Cdd:PRK10982 332 RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDnsrmksdtqwvIDSMRVKTPGHrtqigsLSGGNQQKVIIGRWLLTQPE 411
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490280290 159 VLLCDEATSALDPETTASVLALLADINQRlNLTIVLITHQLEVVKTICDHAALLEQGE---IVESGK 222
Cdd:PRK10982 412 ILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLvagIVDTKT 477
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
34-203 |
2.29e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.50 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 34 ILGRSGAGKSTLIRCLNLLErptsgrilvngqditqlnkaalrdyrlrtgmiFQHFNLLHARTVADnvavpleiAGVPRA 113
Cdd:cd03227 26 ITGPNGSGKSTILDAIGLAL--------------------------------GGAQSATRRRSGVK--------AGCIVA 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 114 AREArvrELLALVDlsekaaafpsQLSGGQKQRVGIARALA-----ARPEVLLcDEATSALDPETTASVLALLADINQRL 188
Cdd:cd03227 66 AVSA---ELIFTRL----------QLSGGEKELSALALILAlaslkPRPLYIL-DEIDRGLDPRDGQALAEAILEHLVKG 131
|
170
....*....|....*
gi 490280290 189 NLTIVlITHQLEVVK 203
Cdd:cd03227 132 AQVIV-ITHLPELAE 145
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
16-171 |
2.51e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 45.01 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLircLNLL--ERPTS--------GRILVNGQDITQLNK------AALR-DY 78
Cdd:PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTL---LSLItgDHPQGysndltlfGRRRGSGETIWDIKKhigyvsSSLHlDY 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 79 RLRTGmifqhfnllhARTVA-----DNVavpleiaGVPRAAREAR---VRELLALVDLSEKAAAFPSQ-LSGGQKQRVGI 149
Cdd:PRK10938 350 RVSTS----------VRNVIlsgffDSI-------GIYQAVSDRQqklAQQWLDILGIDKRTADAPFHsLSWGQQRLALI 412
|
170 180
....*....|....*....|..
gi 490280290 150 ARALAARPEVLLCDEATSALDP 171
Cdd:PRK10938 413 VRALVKHPTLLILDEPLQGLDP 434
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
137-252 |
6.08e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.05 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 137 SQLSGGQKQRVGIARALAA---RPEVLLCDEATSALDPETTASVLALLADINQrLNLTIVLITHQLEVVKtICDHaaLLE 213
Cdd:PRK00635 808 SSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVVK-VADY--VLE 883
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 490280290 214 QGEivESGKLADLLVTPWSRLRQSLLHDPQAE--QEFLTRH 252
Cdd:PRK00635 884 LGP--EGGNLGGYLLASCSPEELIHLHTPTAKalRPYLSSP 922
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1-172 |
8.25e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 43.64 E-value: 8.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 1 MITIEGLSKTYagtgrpalNDIALQIPKGAIY-----GILGRSGAGKSTLIRCLNLLERPTSGRILvngQDIT-----QL 70
Cdd:PRK13409 340 LVEYPDLTKKL--------GDFSLEVEGGEIYegeviGIVGPNGIGKTTFAKLLAGVLKPDEGEVD---PELKisykpQY 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 71 NKAalrDYRLRTGMIFqhfnllhaRTVADNVAVPL---EIAgvpraarearvrELLALVDLSEKAAafpSQLSGGQKQRV 147
Cdd:PRK13409 409 IKP---DYDGTVEDLL--------RSITDDLGSSYyksEII------------KPLQLERLLDKNV---KDLSGGELQRV 462
|
170 180
....*....|....*....|....*
gi 490280290 148 GIARALAARPEVLLCDEATSALDPE 172
Cdd:PRK13409 463 AIAACLSRDADLYLLDEPSAHLDVE 487
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
34-170 |
1.16e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 43.31 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 34 ILGRSGAGKSTLIRCLNLLERPTSGRILvngqditqlnkaalRDYRLRTGMIFQHfnllHARTVaDNVAVPLE-----IA 108
Cdd:PLN03073 540 MVGPNGIGKSTILKLISGELQPSSGTVF--------------RSAKVRMAVFSQH----HVDGL-DLSSNPLLymmrcFP 600
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 109 GVPraarEARVRELLALVDLSEKAAAFPS-QLSGGQKQRVGIARALAARPEVLLCDEATSALD 170
Cdd:PLN03073 601 GVP----EQKLRAHLGSFGVTGNLALQPMyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
139-204 |
1.19e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 43.08 E-value: 1.19e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 139 LSGGQKQRVGIARALAAR---PEVLLCDEATSALDpettasvlalLADINQRLNL---------TIVLITHQLEVVKT 204
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLH----------FDDIKKLLEVlqrlvdkgnTVVVIEHNLDVIKT 897
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
34-208 |
1.24e-04 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 41.82 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 34 ILGRSGAGKSTLIRCLNLL---ERPTSGRILVNGQDITQLNKaalrdyrlRTGMIFQHFNLLHAR--TVADNVAVPLEIA 108
Cdd:cd03240 27 IVGQNGAGKTTIIEALKYAltgELPPNSKGGAHDPKLIREGE--------VRAQVKLAFENANGKkyTITRSLAILENVI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 109 GVpraaREARVRELLALVdlsekaaafPSQLSGGQKQ------RVGIARALAARPEVLLCDEATSALDPETTASVLA-LL 181
Cdd:cd03240 99 FC----HQGESNWPLLDM---------RGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENIEESLAeII 165
|
170 180
....*....|....*....|....*..
gi 490280290 182 ADINQRLNLTIVLITHQLEVVKTIcDH 208
Cdd:cd03240 166 EERKSQKNFQLIVITHDEELVDAA-DH 191
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
139-208 |
1.32e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 42.22 E-value: 1.32e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490280290 139 LSGGQKQRVGIARALAAR---PEVLLCDEATSALDPETTASVLALLADINQRLNlTIVLITHQLEVVKTiCDH 208
Cdd:cd03271 170 LSGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGN-TVVVIEHNLDVIKC-ADW 240
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
7-207 |
3.32e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 41.69 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 7 LSKTYagtgrpalNDIALQIPKGAIY-----GILGRSGAGKSTLIRCLNLLERPTSGRI------------LVNGQDIT- 68
Cdd:COG1245 347 LTKSY--------GGFSLEVEGGEIRegevlGIVGPNGIGKTTFAKILAGVLKPDEGEVdedlkisykpqyISPDYDGTv 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 69 --QLNKAALRDYrlrTGMIFQHfnllhartvadnvavplEIAgvpraarearvrELLALVDLSEKAAafpSQLSGGQKQR 146
Cdd:COG1245 419 eeFLRSANTDDF---GSSYYKT-----------------EII------------KPLGLEKLLDKNV---KDLSGGELQR 463
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490280290 147 VGIARALAARPEVLLCDEATSALDPE---TTASVLALLADINQRlnlTIVLITHQLEVVKTICD 207
Cdd:COG1245 464 VAIAACLSRDADLYLLDEPSAHLDVEqrlAVAKAIRRFAENRGK---TAMVVDHDIYLIDYISD 524
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
16-219 |
8.90e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 40.54 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 16 RPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNG--------QDITQLNKAALrDYRLRTGMIFQ 87
Cdd:PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGnwqlawvnQETPALPQPAL-EYVIDGDREYR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 88 HF--NLLHARTVADNVAVPL---EIAGVPRAAREARVRELLALVDLSEKAAAFP-SQLSGGQKQRVGIARALAARPEVLL 161
Cdd:PRK10636 93 QLeaQLHDANERNDGHAIATihgKLDAIDAWTIRSRAASLLHGLGFSNEQLERPvSDFSGGWRMRLNLAQALICRSDLLL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 490280290 162 CDEATSALDPETTASVLALLADINQrlnlTIVLITHQLEVVKTICDHAALLEQGEIVE 219
Cdd:PRK10636 173 LDEPTNHLDLDAVIWLEKWLKSYQG----TLILISHDRDFLDPIVDKIIHIEQQSLFE 226
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
139-208 |
1.36e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 39.67 E-value: 1.36e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490280290 139 LSGGQKQRVGIARALAARPE-----VLlcDEATSALDPETTASVLALLadinQRL----NlTIVLITHQLEVVKTiCDH 208
Cdd:PRK00349 831 LSGGEAQRVKLAKELSKRSTgktlyIL--DEPTTGLHFEDIRKLLEVL----HRLvdkgN-TVVVIEHNLDVIKT-ADW 901
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
137-183 |
1.38e-03 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 36.83 E-value: 1.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 137 SQLSGGQKQRVG---IARALAA----------RPEVLLCDEATSALDPETTASVLALLAD 183
Cdd:pfam13558 31 GGLSGGEKQLLAylpLAAALAAqygsaegrppAPRLVFLDEAFAKLDEENIRTALELLRA 90
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
31-197 |
1.74e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 38.45 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 31 IYGILGRSGAGKSTLIRCLNLL---ERPTSGRIL------------------VNGQDIT------QLNKAALRDYRLRTG 83
Cdd:COG0419 25 LNLIVGPNGAGKSTILEAIRYAlygKARSRSKLRsdlinvgseeasvelefeHGGKRYRierrqgEFAEFLEAKPSERKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 84 MIFQHFNLLHARTVADNVA-------VPLEIAGVPRAAREARVRELLALVDlsekaaafPSQLSGGQKQRVGIARALAar 156
Cdd:COG0419 105 ALKRLLGLEIYEELKERLKeleealeSALEELAELQKLKQEILAQLSGLDP--------IETLSGGERLRLALADLLS-- 174
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490280290 157 pevLLCDeaTSALDPETTASVLALLADinqrlnltIVLITH 197
Cdd:COG0419 175 ---LILD--FGSLDEERLERLLDALEE--------LAIITH 202
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
137-204 |
5.00e-03 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 37.25 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 137 SQLSGGQKQRVGIARALA----------ARPEVLLCDEATSALDPETTASVLALLADInQRLNLTIVLITH--------- 197
Cdd:cd03279 122 STLSGGETFLASLSLALAlsevlqnrggARLEALFIDEGFGTLDPEALEAVATALELI-RTENRMVGVISHveelkerip 200
|
....*...
gi 490280290 198 -QLEVVKT 204
Cdd:cd03279 201 qRLEVIKT 208
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
2-213 |
8.85e-03 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 36.40 E-value: 8.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 2 ITIEGLSKTYagtGRPALNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRIlvngqditqlnkaalrdyrlr 81
Cdd:cd03222 1 QLYPDCVKRY---GVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND--------------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490280290 82 tgmifqhfnllhartvadnvavplEIAGVPRAAREARVrellalvdlsekaaafpsQLSGGQKQRVGIARALAARPEVLL 161
Cdd:cd03222 57 ------------------------EWDGITPVYKPQYI------------------DLSGGELQRVAIAAALLRNATFYL 94
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 490280290 162 CDEATSALDPETTASVLALLADINQRLNLTIVLITHQLEVVKTICDHAALLE 213
Cdd:cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| |
