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Conserved domains on  [gi|490273787|ref|WP_004169842|]
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DUF333 domain-containing protein [Erwinia amylovora]

Protein Classification

DUF333 domain-containing protein( domain architecture ID 10006879)

DUF333 domain-containing protein similar to Escherichia coli YdbJ and YoaF

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hlx COG3042
Putative hemolysin [General function prediction only];
1-89 3.51e-23

Putative hemolysin [General function prediction only];


:

Pssm-ID: 442276  Cd Length: 82  Bit Score: 84.32  E-value: 3.51e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490273787  1 MKAATSLLVASCLLLSACSSNSDNEPPQqataahvsARVEMADLAVNNCLNAGGTLALSRQLDGSSVGMCQLKNGRRCSE 80
Cdd:COG3042   2 KRALLLLLLAAALLLAGCSSSQPNAPPP--------PQIGMANPASVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCEE 73


                ....*....
gi 490273787 81 GALLNGSCA 89
Cdd:COG3042  74 WALYRGDCP 82
 
Name Accession Description Interval E-value
Hlx COG3042
Putative hemolysin [General function prediction only];
1-89 3.51e-23

Putative hemolysin [General function prediction only];


Pssm-ID: 442276  Cd Length: 82  Bit Score: 84.32  E-value: 3.51e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490273787  1 MKAATSLLVASCLLLSACSSNSDNEPPQqataahvsARVEMADLAVNNCLNAGGTLALSRQLDGSSVGMCQLKNGRRCSE 80
Cdd:COG3042   2 KRALLLLLLAAALLLAGCSSSQPNAPPP--------PQIGMANPASVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCEE 73


                ....*....
gi 490273787 81 GALLNGSCA 89
Cdd:COG3042  74 WALYRGDCP 82
DUF333 pfam03891
Domain of unknown function (DUF333); This small domain of about 70 residues is found in a ...
 48-87 1.54e-11

Domain of unknown function (DUF333); This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of Swiss:O28332 protein. The proteins containing this domain are uncharacterized.


Pssm-ID: 427572  Cd Length: 46  Bit Score: 53.77  E-value: 1.54e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 490273787  48 NCLNAGGTLALSRQLDGSSVGMCQLKNGRRCSEGALLNGS 87
Cdd:pfam03891  7 YCVQQGGKLEIVKDADGGQVGYCVLPDGKRCEEWALYRGD 46
 
Name Accession Description Interval E-value
Hlx COG3042
Putative hemolysin [General function prediction only];
1-89 3.51e-23

Putative hemolysin [General function prediction only];


Pssm-ID: 442276  Cd Length: 82  Bit Score: 84.32  E-value: 3.51e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490273787  1 MKAATSLLVASCLLLSACSSNSDNEPPQqataahvsARVEMADLAVNNCLNAGGTLALSRQLDGSSVGMCQLKNGRRCSE 80
Cdd:COG3042   2 KRALLLLLLAAALLLAGCSSSQPNAPPP--------PQIGMANPASVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCEE 73


                ....*....
gi 490273787 81 GALLNGSCA 89
Cdd:COG3042  74 WALYRGDCP 82
DUF333 pfam03891
Domain of unknown function (DUF333); This small domain of about 70 residues is found in a ...
 48-87 1.54e-11

Domain of unknown function (DUF333); This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of Swiss:O28332 protein. The proteins containing this domain are uncharacterized.


Pssm-ID: 427572  Cd Length: 46  Bit Score: 53.77  E-value: 1.54e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 490273787  48 NCLNAGGTLALSRQLDGSSVGMCQLKNGRRCSEGALLNGS 87
Cdd:pfam03891  7 YCVQQGGKLEIVKDADGGQVGYCVLPDGKRCEEWALYRGD 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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