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Conserved domains on  [gi|490270973|ref|WP_004167204|]
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MULTISPECIES: TraK family protein [Pseudomonadota]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5338 super family cl38561
Family of unknown function (DUF5338); This is a family of unknown function which can be found ...
 7-62 1.47e-05

Family of unknown function (DUF5338); This is a family of unknown function which can be found mostly in Proteobacteria.


The actual alignment was detected with superfamily member pfam17273:

Pssm-ID: 435830  Cd Length: 69  Bit Score: 40.02  E-value: 1.47e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 490270973    7 KKPRRGAGRVAFLARLEQFRELLAAGNEQRTIYDDFGGEAELGISYSQFNRYVVRY 62
Cdd:pfam17273  14 KRSRRDKNRVAFLAVRDDVKAALKAGYALKTIWEHLHETGRIPISYETFRRYVNRY 69
 
Name Accession Description Interval E-value
DUF5338 pfam17273
Family of unknown function (DUF5338); This is a family of unknown function which can be found ...
 7-62 1.47e-05

Family of unknown function (DUF5338); This is a family of unknown function which can be found mostly in Proteobacteria.


Pssm-ID: 435830  Cd Length: 69  Bit Score: 40.02  E-value: 1.47e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 490270973    7 KKPRRGAGRVAFLARLEQFRELLAAGNEQRTIYDDFGGEAELGISYSQFNRYVVRY 62
Cdd:pfam17273  14 KRSRRDKNRVAFLAVRDDVKAALKAGYALKTIWEHLHETGRIPISYETFRRYVNRY 69
 
Name Accession Description Interval E-value
DUF5338 pfam17273
Family of unknown function (DUF5338); This is a family of unknown function which can be found ...
 7-62 1.47e-05

Family of unknown function (DUF5338); This is a family of unknown function which can be found mostly in Proteobacteria.


Pssm-ID: 435830  Cd Length: 69  Bit Score: 40.02  E-value: 1.47e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 490270973    7 KKPRRGAGRVAFLARLEQFRELLAAGNEQRTIYDDFGGEAELGISYSQFNRYVVRY 62
Cdd:pfam17273  14 KRSRRDKNRVAFLAVRDDVKAALKAGYALKTIWEHLHETGRIPISYETFRRYVNRY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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