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Conserved domains on  [gi|490254575|ref|WP_004152553|]
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MULTISPECIES: cloacin immunity family protein [Gammaproteobacteria]

Protein Classification

cloacin immunity family protein( domain architecture ID 10507539)

cloacin immunity family protein similar to Escherichia coli cloacin immunity protein that binds to the bacteriocin, cloacin protein and inhibits it

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cloacin_immun pfam03513
Cloacin immunity protein;
2-81 3.18e-43

Cloacin immunity protein;


:

Pssm-ID: 427342  Cd Length: 80  Bit Score: 134.54  E-value: 3.18e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490254575   2 GLKLHIHWFDKKTEEFKGGEYSKDFGDDGSVIESLGMPLKDNINNGWFDVEKSWVSILQPHFKNVIDISKFDYFVSFVYR 81
Cdd:pfam03513  1 GLKLKLEWFDKKTEEFVGKEYSVDLGDDGSVIEKLGLPLDDNINNGGFDVLKAWVSDLQPFFKHRIDFSKYDYQISFDYR 80
 
Name Accession Description Interval E-value
Cloacin_immun pfam03513
Cloacin immunity protein;
2-81 3.18e-43

Cloacin immunity protein;


Pssm-ID: 427342  Cd Length: 80  Bit Score: 134.54  E-value: 3.18e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490254575   2 GLKLHIHWFDKKTEEFKGGEYSKDFGDDGSVIESLGMPLKDNINNGWFDVEKSWVSILQPHFKNVIDISKFDYFVSFVYR 81
Cdd:pfam03513  1 GLKLKLEWFDKKTEEFVGKEYSVDLGDDGSVIEKLGLPLDDNINNGGFDVLKAWVSDLQPFFKHRIDFSKYDYQISFDYR 80
 
Name Accession Description Interval E-value
Cloacin_immun pfam03513
Cloacin immunity protein;
2-81 3.18e-43

Cloacin immunity protein;


Pssm-ID: 427342  Cd Length: 80  Bit Score: 134.54  E-value: 3.18e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490254575   2 GLKLHIHWFDKKTEEFKGGEYSKDFGDDGSVIESLGMPLKDNINNGWFDVEKSWVSILQPHFKNVIDISKFDYFVSFVYR 81
Cdd:pfam03513  1 GLKLKLEWFDKKTEEFVGKEYSVDLGDDGSVIEKLGLPLDDNINNGGFDVLKAWVSDLQPFFKHRIDFSKYDYQISFDYR 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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