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Conserved domains on  [gi|490254373|ref|WP_004152354|]
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MULTISPECIES: plasmid partitioning/stability family protein [Enterobacterales]

Protein Classification

plasmid partitioning/stability family protein( domain architecture ID 10566708)

plasmid partitioning/stability family protein similar to Escherichia coli StbB that is involved in the control of plasmid partition

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 4-74 1.36e-24

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


:

Pssm-ID: 119304  Cd Length: 72  Bit Score: 92.41  E-value: 1.36e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490254373    4 GQYSFYLHSDD-RTDIAAMATISTISQPLRGEFIRTAATAGAVVYQVDARLPALIPVFFAGQLSAVRLCAVM 74
Cdd:pfam10784   1 RKISFYLHPDAvRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 109-178 1.45e-20

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


:

Pssm-ID: 119304  Cd Length: 72  Bit Score: 81.62  E-value: 1.45e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490254373  109 RRYTLTLQNG--RSGERVESVLTEASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVSELQALV 178
Cdd:pfam10784   1 RKISFYLHPDavRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
 
Name Accession Description Interval E-value
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 4-74 1.36e-24

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 92.41  E-value: 1.36e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490254373    4 GQYSFYLHSDD-RTDIAAMATISTISQPLRGEFIRTAATAGAVVYQVDARLPALIPVFFAGQLSAVRLCAVM 74
Cdd:pfam10784   1 RKISFYLHPDAvRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 109-178 1.45e-20

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 81.62  E-value: 1.45e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490254373  109 RRYTLTLQNG--RSGERVESVLTEASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVSELQALV 178
Cdd:pfam10784   1 RKISFYLHPDavRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
PHA03369 PHA03369
capsid maturational protease; Provisional
 15-220 9.78e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 36.52  E-value: 9.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490254373  15 RTDIAAMATISTISQ--PLRGEFIRTAATAGAVVYQVDARLPALIPVFfagqlsAVRLCAVMALVSGTWSSLTGLPDEPE 92
Cdd:PHA03369 358 RVLAAAAKVAVIAAPqtHTGPADRQRPQRPDGIPYSVPARSPMTAYPP------VPQFCGDPGLVSPYNPQSPGTSYGPE 431

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490254373  93 NGGAALPVSPETEYQRRRYTLTLQNGRSGERVEsvlteASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVS 172
Cdd:PHA03369 432 PVGPVPPQPTNPYVMPISMANMVYPGHPQEHGH-----ERKRKRGGELKEELIETLKLVKKLKEEQESLAKELEATAHKS 506

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490254373 173 ELQALVQQMAGTADVNRAAAAVPDTPTASAAP----VSGSDTREIKKNMRRA 220
Cdd:PHA03369 507 EIKKIAESEFKNAGAKTAAANIEPNCSADAAApatkRARPETKTELEAVVRF 558
 
Name Accession Description Interval E-value
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 4-74 1.36e-24

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 92.41  E-value: 1.36e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490254373    4 GQYSFYLHSDD-RTDIAAMATISTISQPLRGEFIRTAATAGAVVYQVDARLPALIPVFFAGQLSAVRLCAVM 74
Cdd:pfam10784   1 RKISFYLHPDAvRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 109-178 1.45e-20

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 81.62  E-value: 1.45e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490254373  109 RRYTLTLQNG--RSGERVESVLTEASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVSELQALV 178
Cdd:pfam10784   1 RKISFYLHPDavRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
PHA03369 PHA03369
capsid maturational protease; Provisional
 15-220 9.78e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 36.52  E-value: 9.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490254373  15 RTDIAAMATISTISQ--PLRGEFIRTAATAGAVVYQVDARLPALIPVFfagqlsAVRLCAVMALVSGTWSSLTGLPDEPE 92
Cdd:PHA03369 358 RVLAAAAKVAVIAAPqtHTGPADRQRPQRPDGIPYSVPARSPMTAYPP------VPQFCGDPGLVSPYNPQSPGTSYGPE 431

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490254373  93 NGGAALPVSPETEYQRRRYTLTLQNGRSGERVEsvlteASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVS 172
Cdd:PHA03369 432 PVGPVPPQPTNPYVMPISMANMVYPGHPQEHGH-----ERKRKRGGELKEELIETLKLVKKLKEEQESLAKELEATAHKS 506

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490254373 173 ELQALVQQMAGTADVNRAAAAVPDTPTASAAP----VSGSDTREIKKNMRRA 220
Cdd:PHA03369 507 EIKKIAESEFKNAGAKTAAANIEPNCSADAAApatkRARPETKTELEAVVRF 558
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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