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Conserved domains on  [gi|490254057|ref|WP_004152044|]
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MULTISPECIES: DUF3302 domain-containing protein [Bacteria]

Protein Classification

DUF3302 domain-containing protein( domain architecture ID 10570142)

DUF3302 domain-containing protein similar to Escherichia coli inner membrane protein YiaW and uncharacterized protein YibI

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3302 pfam11742
Protein of unknown function (DUF3302); This family of unknown function is expressed by ...
 3-79 7.16e-41

Protein of unknown function (DUF3302); This family of unknown function is expressed by proteobacteria.


:

Pssm-ID: 432040  Cd Length: 77  Bit Score: 130.24  E-value: 7.16e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490254057    3 LNYFALGVLIFVFLVIFYGIIIIHDIPYLIAKKRNHPHSDAIHVAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQH 79
Cdd:pfam11742   1 LDYFALIVLIFVVAVVFYGFIALHDIPYEIAKRRNHPHADAIHVAGWVSLFTLHVLWPFLWIWAYLYRPARGWGFQS 77
CM_2 super family cl00693
Chorismate mutase type II; Chorismate mutase, catalyses the conversion of chorismate to ...
 81-120 3.28e-04

Chorismate mutase type II; Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine..


The actual alignment was detected with superfamily member PRK07857:

Pssm-ID: 469881  Cd Length: 106  Bit Score: 37.36  E-value: 3.28e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 490254057  81 ANTAPDEPEKETDIQQLRQRLSDLEHQV-AAIQRPQSTSAA 120
Cdd:PRK07857  17 MPTGTDDPLSDAEIDELREEIDRLDAEIlALVKRRTEVSQA 57
 
Name Accession Description Interval E-value
DUF3302 pfam11742
Protein of unknown function (DUF3302); This family of unknown function is expressed by ...
 3-79 7.16e-41

Protein of unknown function (DUF3302); This family of unknown function is expressed by proteobacteria.


Pssm-ID: 432040  Cd Length: 77  Bit Score: 130.24  E-value: 7.16e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490254057    3 LNYFALGVLIFVFLVIFYGIIIIHDIPYLIAKKRNHPHSDAIHVAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQH 79
Cdd:pfam11742   1 LDYFALIVLIFVVAVVFYGFIALHDIPYEIAKRRNHPHADAIHVAGWVSLFTLHVLWPFLWIWAYLYRPARGWGFQS 77
PRK07857 PRK07857
chorismate mutase;
81-120 3.28e-04

chorismate mutase;


Pssm-ID: 236117  Cd Length: 106  Bit Score: 37.36  E-value: 3.28e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 490254057  81 ANTAPDEPEKETDIQQLRQRLSDLEHQV-AAIQRPQSTSAA 120
Cdd:PRK07857  17 MPTGTDDPLSDAEIDELREEIDRLDAEIlALVKRRTEVSQA 57
 
Name Accession Description Interval E-value
DUF3302 pfam11742
Protein of unknown function (DUF3302); This family of unknown function is expressed by ...
 3-79 7.16e-41

Protein of unknown function (DUF3302); This family of unknown function is expressed by proteobacteria.


Pssm-ID: 432040  Cd Length: 77  Bit Score: 130.24  E-value: 7.16e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490254057    3 LNYFALGVLIFVFLVIFYGIIIIHDIPYLIAKKRNHPHSDAIHVAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQH 79
Cdd:pfam11742   1 LDYFALIVLIFVVAVVFYGFIALHDIPYEIAKRRNHPHADAIHVAGWVSLFTLHVLWPFLWIWAYLYRPARGWGFQS 77
PRK07857 PRK07857
chorismate mutase;
81-120 3.28e-04

chorismate mutase;


Pssm-ID: 236117  Cd Length: 106  Bit Score: 37.36  E-value: 3.28e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 490254057  81 ANTAPDEPEKETDIQQLRQRLSDLEHQV-AAIQRPQSTSAA 120
Cdd:PRK07857  17 MPTGTDDPLSDAEIDELREEIDRLDAEIlALVKRRTEVSQA 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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