|
Name |
Accession |
Description |
Interval |
E-value |
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
251-521 |
8.86e-143 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 412.41 E-value: 8.86e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQALAqlAPQWLAFYPLVALPVAFLVTAGIGMALERTIIRHLYGRPLETLLAT 330
Cdd:TIGR03409 23 ITFGQMGVINMAHGEFIMIGAYTTYVVQQLFS--SPGLADLYLLIAIPLAFLVSALLGALIERTVIRHLYGRPLDTLLAT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRMLFGAQNVEVANPAWLSGGVQVLPNLILPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAM 410
Cdd:TIGR03409 101 WGISLILQQAVRSIFGAPNVPVTAPEWLSGGLEITGALSLPYNRLFIIVLALAVLLALALLLYRTRLGLRVRAVTQNRSM 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:TIGR03409 181 AAALGINTRRVDALTFALGSGIAGVAGVALTLIGNVGPTLGQLYIVDSFLVVVFGGVGSLWGTVVAAFGLGVLNKILEYF 260
|
250 260 270
....*....|....*....|....*....|.
gi 490253619 491 MGAVLGKILILVMIILFIQKRPQGLFALKGR 521
Cdd:TIGR03409 261 TGASLAKVLVLVLIILFLQWRPQGLFALKGR 291
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
251-522 |
1.47e-85 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 266.16 E-value: 1.47e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQalaqlapqWLAFYPLVALPVAFLVTAGIGMALERTIIRHLYGRP-LETLLA 329
Cdd:COG0559 27 LIFGVMGVINFAHGEFVMLGAYVAYTLAT--------LLGLPLWLALLLAVLVAALLGVLLERLVIRPLRGAPpLALLLA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 330 TWGISLMLIQLVRMLFGAQNVEVanPAWLSGGVQVLPnLILPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRA 409
Cdd:COG0559 99 TIGLSLVLQGLVLLIFGADPRSF--PALLSGSVELGG-VSIPAYRLFIIVVALVLLAALWLFLRRTRLGLAMRAVAQNRE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 410 MAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEP 489
Cdd:COG0559 176 AARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTMGFLLGLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLGAA 255
|
250 260 270
....*....|....*....|....*....|...
gi 490253619 490 QMGAVLGKILILVMIILFIQKRPQGLFALKGRV 522
Cdd:COG0559 256 YLPSGYKDVVAFVLLILVLLVRPQGLFGRKERE 288
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
251-516 |
1.35e-66 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 216.14 E-value: 1.35e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLvqqalaqlAPQWLAFYPLVALPVAFLVTAGIGMALERTIIRHLYGRPLETLLAT 330
Cdd:cd06582 17 LIFGVTGVINFAHGEFYMLGAYVAYT--------LLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLIT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRMLFGAQNVeVANPAWLSGGVQVLPnLILPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAM 410
Cdd:cd06582 89 FGGLLILLQGLLLIFGGDPR-VPPPPLLSGSVELGG-VTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:cd06582 167 ARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAAY 246
|
250 260
....*....|....*....|....*.
gi 490253619 491 MGAVLGKILILVMIILFIQKRPQGLF 516
Cdd:cd06582 247 LSSGYKDAVAFVLLILVLLVRPQGLF 272
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
251-506 |
1.21e-28 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 114.66 E-value: 1.21e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQALAQlapqwlafYPLVALPVAFLVTAGIGMALERTIIRHLYGRPLETLLAT 330
Cdd:pfam02653 21 LIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGP--------GLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLLN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRMLFGAQNVevanPAWLSGGVQVLPNLiLPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAM 410
Cdd:pfam02653 93 LAALGLALFLVTGILGGEGG----TSGITGPSGFPGAF-LSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGP--ELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILE 488
Cdd:pfam02653 168 ARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpsNFGVGLGLDAIAAVVLGGAGSPIGVVIGSLIIGLVQSLGL 247
|
250 260
....*....|....*....|
gi 490253619 489 PQMGA--VLGKILILVMIIL 506
Cdd:pfam02653 248 GALGSppELSLLVLGALLIL 267
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
251-516 |
7.58e-18 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 84.20 E-value: 7.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQALAQLAPQWLAFYPLVALPVAFLVTAGIGMALERTIIRHL-YGRPLETLLA 329
Cdd:PRK10740 31 MVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDTSWLLVAAGFVGAIVIASAYGWSIERVAYRPVrNSKRLIALIS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 330 TWGISLMLIQLVRMLFGAQNV---EVANPAWLSGGVQVLPNLILPWNRLAVLAFVLLVLSFTwLILNRTRLGMNVRAVTQ 406
Cdd:PRK10740 111 AIGMSIFLQNYVSLTEGSRDValpSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALT-IFIRYSRMGRACRACAE 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 407 NRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQL-GNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNK 485
Cdd:PRK10740 190 DLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFyGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEA 269
|
250 260 270
....*....|....*....|....*....|.
gi 490253619 486 ILEPQMGAVLGKILILVMIILFIQKRPQGLF 516
Cdd:PRK10740 270 LSSAYLSTEYKDVVSFALLILVLLVMPTGIL 300
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
102-220 |
6.78e-04 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 40.00 E-value: 6.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 102 LRNLAAGALASH-----------LILSDNVTERASAARTLQREATPAMAALLQQRLQAEtDDTVRGLLEVALARLQ---- 166
Cdd:COG1413 1 VRRAAARALGRLgdpaavpaliaALADEDPDVRAAAARALGRLGDPRAVPALLEALKDP-DPEVRAAAAEALGRIGdpea 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490253619 167 -------LAQPEASARLAAVTLLGHSADPETQALLIPFTDaqhEPDAAVREAASDSLQKIK 220
Cdd:COG1413 80 vpaliaaLKDEDPEVRRAAAEALGRLGDPAAVPALLEALK---DPDWEVRRAAARALGRLG 137
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
251-521 |
8.86e-143 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 412.41 E-value: 8.86e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQALAqlAPQWLAFYPLVALPVAFLVTAGIGMALERTIIRHLYGRPLETLLAT 330
Cdd:TIGR03409 23 ITFGQMGVINMAHGEFIMIGAYTTYVVQQLFS--SPGLADLYLLIAIPLAFLVSALLGALIERTVIRHLYGRPLDTLLAT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRMLFGAQNVEVANPAWLSGGVQVLPNLILPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAM 410
Cdd:TIGR03409 101 WGISLILQQAVRSIFGAPNVPVTAPEWLSGGLEITGALSLPYNRLFIIVLALAVLLALALLLYRTRLGLRVRAVTQNRSM 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:TIGR03409 181 AAALGINTRRVDALTFALGSGIAGVAGVALTLIGNVGPTLGQLYIVDSFLVVVFGGVGSLWGTVVAAFGLGVLNKILEYF 260
|
250 260 270
....*....|....*....|....*....|.
gi 490253619 491 MGAVLGKILILVMIILFIQKRPQGLFALKGR 521
Cdd:TIGR03409 261 TGASLAKVLVLVLIILFLQWRPQGLFALKGR 291
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
251-522 |
1.47e-85 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 266.16 E-value: 1.47e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQalaqlapqWLAFYPLVALPVAFLVTAGIGMALERTIIRHLYGRP-LETLLA 329
Cdd:COG0559 27 LIFGVMGVINFAHGEFVMLGAYVAYTLAT--------LLGLPLWLALLLAVLVAALLGVLLERLVIRPLRGAPpLALLLA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 330 TWGISLMLIQLVRMLFGAQNVEVanPAWLSGGVQVLPnLILPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRA 409
Cdd:COG0559 99 TIGLSLVLQGLVLLIFGADPRSF--PALLSGSVELGG-VSIPAYRLFIIVVALVLLAALWLFLRRTRLGLAMRAVAQNRE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 410 MAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEP 489
Cdd:COG0559 176 AARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTMGFLLGLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLGAA 255
|
250 260 270
....*....|....*....|....*....|...
gi 490253619 490 QMGAVLGKILILVMIILFIQKRPQGLFALKGRV 522
Cdd:COG0559 256 YLPSGYKDVVAFVLLILVLLVRPQGLFGRKERE 288
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
251-516 |
1.35e-66 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 216.14 E-value: 1.35e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLvqqalaqlAPQWLAFYPLVALPVAFLVTAGIGMALERTIIRHLYGRPLETLLAT 330
Cdd:cd06582 17 LIFGVTGVINFAHGEFYMLGAYVAYT--------LLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLIT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRMLFGAQNVeVANPAWLSGGVQVLPnLILPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAM 410
Cdd:cd06582 89 FGGLLILLQGLLLIFGGDPR-VPPPPLLSGSVELGG-VTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:cd06582 167 ARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAAY 246
|
250 260
....*....|....*....|....*.
gi 490253619 491 MGAVLGKILILVMIILFIQKRPQGLF 516
Cdd:cd06582 247 LSSGYKDAVAFVLLILVLLVRPQGLF 272
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
251-506 |
1.21e-28 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 114.66 E-value: 1.21e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQALAQlapqwlafYPLVALPVAFLVTAGIGMALERTIIRHLYGRPLETLLAT 330
Cdd:pfam02653 21 LIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGP--------GLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLLN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRMLFGAQNVevanPAWLSGGVQVLPNLiLPWNRLAVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAM 410
Cdd:pfam02653 93 LAALGLALFLVTGILGGEGG----TSGITGPSGFPGAF-LSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGP--ELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILE 488
Cdd:pfam02653 168 ARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpsNFGVGLGLDAIAAVVLGGAGSPIGVVIGSLIIGLVQSLGL 247
|
250 260
....*....|....*....|
gi 490253619 489 PQMGA--VLGKILILVMIIL 506
Cdd:pfam02653 248 GALGSppELSLLVLGALLIL 267
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
251-516 |
1.88e-21 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 94.05 E-value: 1.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCwlvqqALAQLAPQWLafyPLVALPVAFLVTAGIGMALERTIIRhLYGRPLetLLAT 330
Cdd:cd06581 13 LLLGYAGQLSLGHAAFFGIGAYTA-----ALLATRLGLP---FWLALLAAGLVAALVGLLLGLPALR-LRGVYF--AIAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRmlfgaqnvevaNPAWLSG---GVQVLPNLILPWNRLA--------VLAFVLLVLSFTWLILnRTRLGM 399
Cdd:cd06581 82 LAFAEIVRLLAL-----------NWSSLTGgsnGLSGIPPPLLGGLLLSsplafyylVLAVLLLVLLLLRRLV-RSPFGR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 400 NVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS-QLGNVGPE-LGQGYIIDSFLVVVLGGVGQLAGSVAAA 477
Cdd:cd06581 150 ALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAhYLGFVSPEsFGFALSIELLLMVVLGGLGSLLGPVLGA 229
|
250 260 270
....*....|....*....|....*....|....*....
gi 490253619 478 FGLGIFNKILEPQMGAvLGKILILVMIILFIQKRPQGLF 516
Cdd:cd06581 230 ALLVLLPELLRSLGPG-LRLLVFGLLLILVVLFLPRGLV 267
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
251-524 |
9.54e-19 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 86.29 E-value: 9.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCwlvqqALAQLAPQWlafYPLVALPVAFLVTAGIGMALERTIIRhLYGRPLetLLAT 330
Cdd:COG4177 23 LLLGYTGLLSLGHAAFFGIGAYAA-----ALLTTHLGL---PFWLALLLAGLVAALLGLLIGLPALR-LRGDYL--AIAT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLV---RMLFGAQNVEVANPAWLSGGVQVLPNLILPWnrlAVLAFVLLVLSFTWLILnRTRLGMNVRAVTQN 407
Cdd:COG4177 92 LAFAEIVRLLAlnlESLTGGADGLSGIPRPTLFGLDLGSPLAFYY---LVLALLVLVLLLLRRLV-RSRFGRALRAIREN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 408 RAMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPE-LGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNK 485
Cdd:COG4177 168 EIAAEALGINVTRYKLLAFVLSAALAGLAGALYaHYVGFVSPEsFSFLLSIEILLMVVLGGLGSLLGPVLGAVLLVLLPE 247
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 490253619 486 ILEPQMGA---VLGKILILVMIIlfiqkRPQGLFALKGRVID 524
Cdd:COG4177 248 LLRSLPEYrllIFGLLLILVVLF-----RPRGLAGLLRRLRR 284
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
251-516 |
7.58e-18 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 84.20 E-value: 7.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQQALAQLAPQWLAFYPLVALPVAFLVTAGIGMALERTIIRHL-YGRPLETLLA 329
Cdd:PRK10740 31 MVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDTSWLLVAAGFVGAIVIASAYGWSIERVAYRPVrNSKRLIALIS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 330 TWGISLMLIQLVRMLFGAQNV---EVANPAWLSGGVQVLPNLILPWNRLAVLAFVLLVLSFTwLILNRTRLGMNVRAVTQ 406
Cdd:PRK10740 111 AIGMSIFLQNYVSLTEGSRDValpSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALT-IFIRYSRMGRACRACAE 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 407 NRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQL-GNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNK 485
Cdd:PRK10740 190 DLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFyGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEA 269
|
250 260 270
....*....|....*....|....*....|.
gi 490253619 486 ILEPQMGAVLGKILILVMIILFIQKRPQGLF 516
Cdd:PRK10740 270 LSSAYLSTEYKDVVSFALLILVLLVMPTGIL 300
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
251-504 |
1.43e-17 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 82.71 E-value: 1.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 251 ITYGLLGVINMAHGEMLMIGAYSCWLVQqalaqlapqWLAFYPLVALPVAFLVTAGIGmALERTIIRHLYGRPLetlLAT 330
Cdd:cd06574 13 IVFRILGFPDLTVDGSFPLGAAVAAILI---------VAGYNPWLALIAAILAGAAAG-LVTGFLHTRLKINGL---LAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 331 WGISLMLIQLVRMLFGAQNVEVANPAWLSGGVQVLPNLILPWNRLAVLAFVLLVLSFTWLILnRTRLGMNVRAVTQNRAM 410
Cdd:cd06574 80 ILIMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFL-RTKLGLAMRATGDNPDM 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQ-LGNVGPELGQGYIIDSFLVVVLGGvgqlAGSVAAAFGLGIFNKILep 489
Cdd:cd06574 159 ARSLGINVDRTRILGLVISNALAALGGALYAQyQGFADVNMGIGTGVIGLAAVIIGG----AIVGRRTIKASILGVII-- 232
|
250
....*....|....*
gi 490253619 490 qmGAVLGKILILVMI 504
Cdd:cd06574 233 --GAILYRIALALAL 245
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
293-505 |
2.53e-16 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 78.99 E-value: 2.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 293 PLVALPVAFLVTAGIGmALERTIIrhLYGRpLETLLATWGISLMLIQLVRMLFGAQNVEVANPAWLSGGVQVLPnLILPW 372
Cdd:cd06579 46 IPLAILAALAVGALIG-LLNGLLV--AYLR-IPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSFFLGGGLI-LGIPV 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 373 nrlaVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPELG 451
Cdd:cd06579 121 ----PVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLaARLGSAQPTAG 196
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490253619 452 QGYIIDSFLVVVLGGV------GQLAGSVAAAFGLGIFNKIL------EPQMGAVLGKILILVMII 505
Cdd:cd06579 197 NGYELDAIAAVVLGGTsltggrGSVLGTLLGALLLGVLNNGLnllgvsSFWQQIVKGAILLLAVAL 262
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
293-511 |
4.26e-16 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 79.38 E-value: 4.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 293 PLVALPVAFLVTAGIGmALERTIIRHLYGRPLetlLATWGISLMLIQLVRMLFGAQNVEVANPAWLS-GGVQVLPnliLP 371
Cdd:COG1172 97 ILLAILLALLVGALLG-LLNGLLVAKLRIPPF---IVTLGTMFIARGLALLLTGGRPISGLPDAFRAlGQGSLLG---IP 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 372 WnrlAVLAFVLLVLsFTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPEL 450
Cdd:COG1172 170 V---PVLIALVVAL-VAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLaARLGSAQPNA 245
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490253619 451 GQGYIIDSFLVVVLGGV------GQLAGSVAAAFGLGIFNKILePQMG-------AVLGKILILVMIILFIQKR 511
Cdd:COG1172 246 GSGYELDAIAAVVIGGTsltggrGSVLGTLLGALILGVLNNGL-NLLGvssywqqIVKGAIILLAVLLDRLRRR 318
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
375-508 |
1.86e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 58.22 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 375 LAVLAFVLLVLsfTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS--QLGNVGPELGQ 452
Cdd:cd06580 97 LLLLALLLVIL--VWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVlgVQGRFTEGMSA 174
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 490253619 453 GYIIDSFLVVVLGGvGQLAGSVAAAFGLGIFNkILEPQMGAVLGKILILVMIILFI 508
Cdd:cd06580 175 GYGFIAIAVALLGR-WNPLGILLAALLFGALE-AGGIALQRSGGVPSELVQVLPGI 228
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
378-484 |
3.37e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 55.51 E-value: 3.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 378 LAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGV--ALSQLGNVGPELGQGYI 455
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAveVLGVQGRLTPGFSPGYG 279
|
90 100
....*....|....*....|....*....
gi 490253619 456 IDSFLVVVLGGvGQLAGSVAAAFGLGIFN 484
Cdd:COG4603 280 FTGIAVALLGR-NNPLGIILAALLFGALY 307
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
375-455 |
1.81e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 52.76 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 375 LAVLAFVLLVLsfTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS--QLGNVGPEL-- 450
Cdd:COG1079 150 LVYLALLLVPL--VWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAYLSlgYVGSFTEGMta 227
|
....*
gi 490253619 451 GQGYI 455
Cdd:COG1079 228 GRGFI 232
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
281-482 |
1.47e-06 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 50.34 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 281 LAQLAPQWlAFYPLVALPVAFLVTAGIGmALERTIIRHLYGRPLETLLAtwgiSLMLIQLVRMLFGAQNVEVANPAW--L 358
Cdd:PRK11618 76 LAKLIGDY-GWSPLLAFPLVLVMGAAFG-AFMGALIHYLKLPAFIVTLA----GMFLARGVSFLVSEESIPINHPFYdtL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 359 SG-GVQVLPNLILPWNRLAVLAFVLLVLsftwLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGG 437
Cdd:PRK11618 150 SSlAWKLPGGGRLSAMALIMLAVVAIGI----FLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAG 225
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 490253619 438 VALSQLGNVGPEL-GQGYIIDSFLVVVL------GGVGQLAGSVaaaFGLGI 482
Cdd:PRK11618 226 IVFSLYTSAGYALaAVGVELDAIAAVVIggtlltGGVGTVLGTL---FGVLI 274
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
380-487 |
3.68e-05 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 45.88 E-value: 3.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 380 FVLLVLSFTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPELGQGYIIDS 458
Cdd:PRK15432 165 LTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFaSQIGFIPNQTGTGLEMKA 244
|
90 100 110
....*....|....*....|....*....|....*
gi 490253619 459 FLVVVLGGV------GQLAGSVAAAFGLGIFNKIL 487
Cdd:PRK15432 245 IAACVLGGIsllggsGTIIGAVLGAYFLTQIDSVL 279
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
293-480 |
5.60e-05 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 45.45 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 293 PLVALPVAFLVTAGIGMA---LERTIIRHLYGRPLETLLATWGISLMLIQLVRMLFGAQNVEVANPAW--LSGGVQVLPN 367
Cdd:PRK09478 101 ATMPIALVILIVCAIGAViglINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASPISGFDSGFstFAQGFVALGS 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 368 LILPWnrlaVLAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS-QLGNV 446
Cdd:PRK09478 181 FRLSY----ITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAgRIGSA 256
|
170 180 190
....*....|....*....|....*....|....
gi 490253619 447 GPELGQGYIIDSFLVVVLGGVgQLAGSVAAAFGL 480
Cdd:PRK09478 257 TNNLGFMYELDAIAACVVGGV-SFSGGVGTVIGV 289
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
380-484 |
6.21e-04 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 42.07 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 380 FVLLVLSFTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGG-VALSQLGNVGPELGQG---YI 455
Cdd:PRK09699 168 FSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGvVSTARLGAAEPLAGMGfetYA 247
|
90 100 110
....*....|....*....|....*....|..
gi 490253619 456 IDSFLV---VVLGGVGQLAGSVAAAFGLGIFN 484
Cdd:PRK09699 248 IASAIIggtSFFGGKGRIFSVVIGGLIIGTIN 279
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
102-220 |
6.78e-04 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 40.00 E-value: 6.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 102 LRNLAAGALASH-----------LILSDNVTERASAARTLQREATPAMAALLQQRLQAEtDDTVRGLLEVALARLQ---- 166
Cdd:COG1413 1 VRRAAARALGRLgdpaavpaliaALADEDPDVRAAAARALGRLGDPRAVPALLEALKDP-DPEVRAAAAEALGRIGdpea 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490253619 167 -------LAQPEASARLAAVTLLGHSADPETQALLIPFTDaqhEPDAAVREAASDSLQKIK 220
Cdd:COG1413 80 vpaliaaLKDEDPEVRRAAAEALGRLGDPAAVPALLEALK---DPDWEVRRAAARALGRLG 137
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
378-504 |
1.41e-03 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 40.97 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 378 LAFVLLVLSFTWLILNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAF---GLGSGIAGLggVALSQLGNVGPELGQGY 454
Cdd:PRK15038 167 LIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYamtGLASAIAAV--LLVSYFGSARSDLGASF 244
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490253619 455 IIDSFLVVVLGGV------GQLAGSVAAAFGLGIFNKILepQM--------GAVLGKILILVMI 504
Cdd:PRK15038 245 LMPAITAVVLGGAniyggsGSIIGTALAVLLVGYLQQGL--QMagvpnqisSALSGALLIVVVV 306
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
123-229 |
1.62e-03 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 38.84 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 123 RASAARTLQREATPAMAALLQQRLQAEtDDTVRGLLEVALARLQ-----------LAQPEASARLAAVTLLGHSADPETQ 191
Cdd:COG1413 2 RRAAARALGRLGDPAAVPALIAALADE-DPDVRAAAARALGRLGdpravpalleaLKDPDPEVRAAAAEALGRIGDPEAV 80
|
90 100 110
....*....|....*....|....*....|....*...
gi 490253619 192 ALLIPFTDaqhEPDAAVREAASDSLQKIKHRLLLGDLL 229
Cdd:COG1413 81 PALIAALK---DEDPEVRRAAAEALGRLGDPAAVPALL 115
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
375-475 |
1.90e-03 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 40.43 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253619 375 LAVLAFVLlvlsFTWLiLNRTRLGMNVRAVTQNRAMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPELGQG 453
Cdd:PRK11285 184 LTVACFVV----FGFL-LNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILaSRMTSGQPMTSIG 258
|
90 100
....*....|....*....|..
gi 490253619 454 YIIDSFLVVVLGGVgQLAGSVA 475
Cdd:PRK11285 259 FELIVISACVLGGV-SLKGGIA 279
|
|
| |
