|
Name |
Accession |
Description |
Interval |
E-value |
| PhnU |
TIGR03226 |
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease ... |
1-286 |
4.09e-130 |
|
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Pssm-ID: 274484 Cd Length: 288 Bit Score: 370.82 E-value: 4.09e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 1 MAQTLTLARPARNLRPYLWLALPLLVLATLFFYPLLLIAEQALRDASGNLSLETFWQVIDSKRFIGALLNTLQIAVFATL 80
Cdd:TIGR03226 3 AAAHDAAARPAENLAPALILALAALVLAPLFFYPLALIAELALLDAHGNLSLAAFRQFFASHDFIDALGNTLQIAFAAAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 81 GCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFELPPVDFLYSINGVILA 160
Cdd:TIGR03226 83 GALVLGSLLAAILFFIPFPGAQLVGRFIDLFIAFPSFLIAFAFIFIYGSAGLLNGALMAAFAFDAPPLDFLFGAGGVILA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 161 EITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTL 240
Cdd:TIGR03226 163 EITFFTPFVMRPLLAGFAQIDKRLLEAASILGAHGLMLARQVIFPAALPAIAAGGILCFLLTLNEFGILLFIGAAGLITL 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 490252225 241 PMMVYSKAILESDYSVACMIALINILLSLGLFMLYRLAAARTGVRS 286
Cdd:TIGR03226 243 PMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAAARAGEGG 288
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
1-286 |
6.44e-127 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 363.17 E-value: 6.44e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 1 MAQTLTLARPARNLRPYLWLALPLLVLATLFFYPLLLIAEQALRDASGnLSLETFWQVIDSKRFIGALLNTLQIAVFATL 80
Cdd:PRK15050 9 AAAHAAAARRRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHG-LGLATYRAVLGSPDFRGALLTTLQIAFASTA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 81 GCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFELPPVDFLYSINGVILA 160
Cdd:PRK15050 88 GCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEAPPLDFLYSPGGVILA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 161 EITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTL 240
Cdd:PRK15050 168 EITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTL 247
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 490252225 241 PMMVYSKAILESDYSVACMIALINILLSLGLFMLYRLAAARTGVRS 286
Cdd:PRK15050 248 PVLIYSKAIVDFDYPTACAIAVVNLALSLGLYALYRRVNRRAGGGS 293
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
31-283 |
2.42e-54 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 177.25 E-value: 2.42e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 31 FFYPLLLIAEQALrdasgNLSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDT 110
Cdd:COG0555 24 VLLPLAALVLKAA-----GLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 111 FIALPTFLITLAFTFIYGSAGLLNGTLMALfafelpPVDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASI 190
Cdd:COG0555 99 PFALPTAVAGIALLLLFGPNGWLGQLLAPL------GIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAAT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 191 LGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAK---GVNTLPMMVYSKaILESDYSVACMIALINILL 267
Cdd:COG0555 173 LGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNlpmKTEILPLLIYLK-LEEGDYAGATAIALVLLLI 251
|
250
....*....|....*.
gi 490252225 268 SLGLFMLYRLAAARTG 283
Cdd:COG0555 252 SFLLLLLINLLQRRSR 267
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
68-269 |
2.32e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 72.70 E-value: 2.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 68 LLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAftfiygsagllngtLMALFAFELPP 147
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL--------------LVLLFGVLLGW 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 148 VDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFG 227
Cdd:cd06261 67 GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 490252225 228 IVLFIGAKGVNTLPMMVYSKAILES--DYSVACMIALINILLSL 269
Cdd:cd06261 147 LVSFLGGGEAPGPGTGLLLIFAILFpgDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
86-280 |
1.75e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 47.29 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 86 GSVLALIL-VFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFelppvdflysingvilaeITV 164
Cdd:pfam00528 1 GIPLGIIAaLRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILA------------------LLG 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 165 FTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTLPMMV 244
Cdd:pfam00528 63 WAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE 142
|
170 180 190
....*....|....*....|....*....|....*.
gi 490252225 245 yskAILESDYSVACMIALINILLSLGLFMLYRLAAA 280
Cdd:pfam00528 143 ---AILGYDYPEIQGPVLAAALILLLLNLLVDILQR 175
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
71-214 |
4.64e-05 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 43.30 E-value: 4.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 71 TLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLnGTLmalfafelppvDF 150
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPL-GFL-----------GL 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490252225 151 LYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALP---ALMAG 214
Cdd:NF038017 69 LYTPTAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFAllaAVLAG 135
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PhnU |
TIGR03226 |
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease ... |
1-286 |
4.09e-130 |
|
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Pssm-ID: 274484 Cd Length: 288 Bit Score: 370.82 E-value: 4.09e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 1 MAQTLTLARPARNLRPYLWLALPLLVLATLFFYPLLLIAEQALRDASGNLSLETFWQVIDSKRFIGALLNTLQIAVFATL 80
Cdd:TIGR03226 3 AAAHDAAARPAENLAPALILALAALVLAPLFFYPLALIAELALLDAHGNLSLAAFRQFFASHDFIDALGNTLQIAFAAAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 81 GCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFELPPVDFLYSINGVILA 160
Cdd:TIGR03226 83 GALVLGSLLAAILFFIPFPGAQLVGRFIDLFIAFPSFLIAFAFIFIYGSAGLLNGALMAAFAFDAPPLDFLFGAGGVILA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 161 EITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTL 240
Cdd:TIGR03226 163 EITFFTPFVMRPLLAGFAQIDKRLLEAASILGAHGLMLARQVIFPAALPAIAAGGILCFLLTLNEFGILLFIGAAGLITL 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 490252225 241 PMMVYSKAILESDYSVACMIALINILLSLGLFMLYRLAAARTGVRS 286
Cdd:TIGR03226 243 PMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAAARAGEGG 288
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
1-286 |
6.44e-127 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 363.17 E-value: 6.44e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 1 MAQTLTLARPARNLRPYLWLALPLLVLATLFFYPLLLIAEQALRDASGnLSLETFWQVIDSKRFIGALLNTLQIAVFATL 80
Cdd:PRK15050 9 AAAHAAAARRRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHG-LGLATYRAVLGSPDFRGALLTTLQIAFASTA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 81 GCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFELPPVDFLYSINGVILA 160
Cdd:PRK15050 88 GCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEAPPLDFLYSPGGVILA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 161 EITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTL 240
Cdd:PRK15050 168 EITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTL 247
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 490252225 241 PMMVYSKAILESDYSVACMIALINILLSLGLFMLYRLAAARTGVRS 286
Cdd:PRK15050 248 PVLIYSKAIVDFDYPTACAIAVVNLALSLGLYALYRRVNRRAGGGS 293
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
31-283 |
2.42e-54 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 177.25 E-value: 2.42e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 31 FFYPLLLIAEQALrdasgNLSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDT 110
Cdd:COG0555 24 VLLPLAALVLKAA-----GLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 111 FIALPTFLITLAFTFIYGSAGLLNGTLMALfafelpPVDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASI 190
Cdd:COG0555 99 PFALPTAVAGIALLLLFGPNGWLGQLLAPL------GIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAAT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 191 LGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAK---GVNTLPMMVYSKaILESDYSVACMIALINILL 267
Cdd:COG0555 173 LGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNlpmKTEILPLLIYLK-LEEGDYAGATAIALVLLLI 251
|
250
....*....|....*.
gi 490252225 268 SLGLFMLYRLAAARTG 283
Cdd:COG0555 252 SFLLLLLINLLQRRSR 267
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
9-281 |
3.51e-41 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 149.16 E-value: 3.51e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 9 RPARNLRPYLWLALPLLVLATLFFYPLLLIAEQALRDASGNlsletFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSV 88
Cdd:COG1178 2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLAN-----FWALLSDPYLWRALGNTLLLALLVTLLSLLLGVP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 89 LALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFELPPvdfLYSINGVILAEITVFTPL 168
Cdd:COG1178 77 LAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPD---IYGLGGIILVLVLFNYPY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 169 VMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAkGVNTLPMMVYSKA 248
Cdd:COG1178 154 VYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG-GYTTLTTAIYQAW 232
|
250 260 270
....*....|....*....|....*....|...
gi 490252225 249 ILESDYSVACMIALINILLSLGLFMLYRLAAAR 281
Cdd:COG1178 233 LGDFDLGAAAALALVLLLLVLLLLLLERRLRRR 265
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
8-285 |
1.36e-37 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 134.12 E-value: 1.36e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 8 ARPARNLRPYLWLALPLLVLATLFFYPLLLIAEQALRDAS------GNLSLETFWQVIDSKRFIGALLNTLQIAVFATLG 81
Cdd:COG1176 3 AALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDpyggvvPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 82 CLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFElPPVDFLYSINGVILAE 161
Cdd:COG1176 83 CLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLID-EPLRLLYTEFAVVIGL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 162 ITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTLP 241
Cdd:COG1176 162 VYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIG 241
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 490252225 242 MMVYSKAILESDYSVACMIALINILLSLGLFMLYRLAAARTGVR 285
Cdd:COG1176 242 NLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
50-286 |
5.77e-30 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 113.67 E-value: 5.77e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 50 LSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGS 129
Cdd:COG1177 45 FTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 130 AGLLNGTLmalfafelppvdflysinGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALP 209
Cdd:COG1177 125 LGLSGGLW------------------GLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAP 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490252225 210 ALMAGGSLCLLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILESDYSVACmIALINILLSLGLFMLYRLAAARTGVRS 286
Cdd:COG1177 187 GILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINA-LSTLLILLSLLLLLLAERLRRRGERRR 262
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
31-281 |
1.89e-24 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 102.55 E-value: 1.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 31 FFYPLLLIAEQALRDA-SGNLSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVID 109
Cdd:COG1178 302 LLLPLLALLLWSLTKAlDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAM 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 110 TFIALPTFLITLAFTFIYGSAGLLN--GTLMALfafelppvdflysingvILAEITVFTPLVMRPLMAGLRQIDKSQLEA 187
Cdd:COG1178 382 LPYAVPGIVLGLGLLLLFNRPLPLLlyGTLAIL-----------------VLAYVVRFLPFALRSLEAALAQIDPSLEEA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 188 ASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILEsDYSVACMIALINILL 267
Cdd:COG1178 445 ARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSG-RYGEAAALALLLVLV 523
|
250
....*....|....
gi 490252225 268 SLGLFMLYRLAAAR 281
Cdd:COG1178 524 SLLPVLLLERLLGR 537
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
47-232 |
2.07e-20 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 87.38 E-value: 2.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 47 SGNLSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFI 126
Cdd:CHL00187 36 ASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATV 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 127 YGSAGLLnGTLMALFAFELPpvdflYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPA 206
Cdd:CHL00187 116 YGDNGWI-GHLLSHLGIQIV-----FTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPP 189
|
170 180
....*....|....*....|....*.
gi 490252225 207 ALPALMAGGSLCLLLTTNEFGIVLFI 232
Cdd:CHL00187 190 LIPALLTGLALTFSRAIGEYGSIVII 215
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
31-281 |
2.98e-20 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 88.27 E-value: 2.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 31 FFYPLLLIAEQALRDASGNLS------LETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFiPFPGSQLV 104
Cdd:COG1175 35 VLYPLLYTLYLSFTDWNLLGPppefvgLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 105 GRVIdtFI--ALPTFLITLAFTFIY-GSAGLLNGTLMALFafeLPPVDFLYSIN----GVILAEITVFTPLVMRPLMAGL 177
Cdd:COG1175 114 RTLF--FLpwVISPVVVALIWKWLFnPDYGLLNALLGALG---LEPINWLGDPSlalpAVIIVTVWKGTGFNMLIFLAGL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 178 RQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVN----TLPMMVYSKAILESD 253
Cdd:COG1175 189 QSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGnsttTLVLYIYQTAFQQFD 268
|
250 260
....*....|....*....|....*...
gi 490252225 254 YSVACMIALINILLSLGLFMLYRLAAAR 281
Cdd:COG1175 269 FGYASAIAVVLFLIILVLTLLQLRLLRR 296
|
|
| permease_CysT |
TIGR02139 |
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ... |
35-274 |
3.98e-20 |
|
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]
Pssm-ID: 131194 Cd Length: 265 Bit Score: 87.38 E-value: 3.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 35 LLLIAEQALRDASGNLSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIAL 114
Cdd:TIGR02139 19 IVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFAL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 115 PTFLITLAFTFIYGSAGLLnGTLMALFAFELppvdfLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAH 194
Cdd:TIGR02139 99 PTAVAGIALATLYSPNGWI-GSFLAPLGIKI-----AFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGAS 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 195 PLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAK---GVNTLPMMVYSKaILESDYSVACMIALinILLSLGL 271
Cdd:TIGR02139 173 RWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNlpmKTEIAPLLIFQK-LEQYDYAGATAIAS--VMLIISF 249
|
...
gi 490252225 272 FML 274
Cdd:TIGR02139 250 VIL 252
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
68-269 |
2.32e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 72.70 E-value: 2.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 68 LLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAftfiygsagllngtLMALFAFELPP 147
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL--------------LVLLFGVLLGW 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 148 VDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFG 227
Cdd:cd06261 67 GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 490252225 228 IVLFIGAKGVNTLPMMVYSKAILES--DYSVACMIALINILLSL 269
Cdd:cd06261 147 LVSFLGGGEAPGPGTGLLLIFAILFpgDLGVAAAVALILLLLSL 190
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
35-285 |
8.14e-15 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 72.86 E-value: 8.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 35 LLLIAEQALRDASGNLSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIAL 114
Cdd:PRK10971 27 ILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 115 PTFLITLAFTFIYGSAGLLnGTLMALFAfelppVDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAH 194
Cdd:PRK10971 107 PTAVAGLTLASLFSVNGWY-GEWLAKFD-----IKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGAT 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 195 PLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIG---AKGVNTLPMMVYSKaILESDYSVACMIALINILLSLGL 271
Cdd:PRK10971 181 RWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAgniAWKTEVTSLMIFVR-LQEFDYPAASAIASVILAASLLL 259
|
250
....*....|....
gi 490252225 272 FMLYRLAAARTGVR 285
Cdd:PRK10971 260 LFSINTLQSRFGRR 273
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
31-274 |
7.19e-12 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 64.35 E-value: 7.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 31 FFYPLLLIAEQALRDAS-----------GNLSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFP 99
Cdd:COG0395 28 FLFPLYWMVVTSFKPPAeifsgppsllpSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFR 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 100 GSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNgtlmalfafelppvdflySINGVILAEITVFTPLVMRPLMAGLRQ 179
Cdd:COG0395 108 GRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLN------------------TYWGLILPYLAFGLPFGIFLLRQFFRS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 180 IDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGI-VLFIGAKGVNTLPMMVYS-KAILESDYSVA 257
Cdd:COG0395 170 IPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWpLILLTSPDLRTLPVGLASfQGQYGTDWGLL 249
|
250
....*....|....*..
gi 490252225 258 CMIALINILLSLGLFML 274
Cdd:COG0395 250 MAAAVIATLPVLILFLF 266
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
65-285 |
7.57e-12 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 63.40 E-value: 7.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 65 IGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFE 144
Cdd:PRK09421 8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWFGIS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 145 lppvdFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTN 224
Cdd:PRK09421 88 -----FAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490252225 225 EFG-IVLFIG--AKGVNTLPMMVYSKAILESDYSVACMIALINILLSLGLFMLYRLAAARTGVR 285
Cdd:PRK09421 163 EFGaTITFVSniPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKR 226
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
34-283 |
9.04e-12 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 65.09 E-value: 9.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 34 PLLLIAEQALRDASGN-LSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFI 112
Cdd:TIGR03262 21 PLLALLTKSVYDSDGDfIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 113 ALPTFLITLAFTFIYGSAGLLNGTLMAlfafelppvDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILG 192
Cdd:TIGR03262 101 LAPSLLPAISLIYLFGNQGLLKGLLGG---------FSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMG 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 193 AHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAkGVNTLPMMVYSKAILESDYSVACMIALINILLSLGLF 272
Cdd:TIGR03262 172 ASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG-DYNVLATDIYKQVIGQQNFPMGAVVGVLLLLPALLAF 250
|
250
....*....|.
gi 490252225 273 MLYRLAAARTG 283
Cdd:TIGR03262 251 GIDRAIQRRQR 261
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
50-267 |
8.93e-10 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 58.57 E-value: 8.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 50 LSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPfPGSQLVGRVIDTFIALPTFLITL-AFTFIYG 128
Cdd:PRK10683 81 LNLGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSK-PSTRNILLLLVILPSWTSFLIRVyAWMGILK 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 129 SAGLLNGTLMALFAFElPPVDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAAL 208
Cdd:PRK10683 160 NNGVLNNFLLWLGVID-QPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTK 238
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490252225 209 PALMAGGSLCLLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILESDYSVACMIALINILL 267
Cdd:PRK10683 239 GGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLL 297
|
|
| PRK10592 |
PRK10592 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
50-279 |
5.43e-09 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182574 Cd Length: 281 Bit Score: 56.01 E-value: 5.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 50 LSLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILV-FIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYG 128
Cdd:PRK10592 47 WSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVrFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFV 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 129 SAGllngtlmalFAFELPPVDFLYSIngvILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAAL 208
Cdd:PRK10592 127 ALA---------HAIGWPADRGMLTI---WLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIM 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490252225 209 PALMAGGSLCLLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILESDYSVACMIALINILLSLGLFMLYRLAA 279
Cdd:PRK10592 195 PAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMA 265
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
68-276 |
1.01e-08 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 55.08 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 68 LLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFElPP 147
Cdd:PRK09497 65 LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVID-TP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 148 VDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFG 227
Cdd:PRK09497 144 IRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFY 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490252225 228 IVLFIGAKGVNTLPMMVYSKAILESD--YSVACMIALInILLSLGLFMLYR 276
Cdd:PRK09497 224 VSDLLGGAKNLLIGNVIKSQFLNIRDwpFGAATSITLT-IVMGLMLLVYYR 273
|
|
| COG4132 |
COG4132 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
34-227 |
2.16e-08 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443307 [Multi-domain] Cd Length: 286 Bit Score: 54.04 E-value: 2.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 34 PLLLIAEQALRDASGNLSLETFWQvIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIpfpGSQLVGRVIDTFIA 113
Cdd:COG4132 32 PTVWVVIGAFQDDDGGFTLANYAE-LTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRG---GPGWLRRAVLAFSG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 114 LPTFL--ITLAFTFI--YGSAGLLNgTLMALFAFELPPVDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAAS 189
Cdd:COG4132 108 VASNFagVPLAFAFIatLGRNGLVT-LLLKQLGIDLYDGFNLYSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAA 186
|
170 180 190
....*....|....*....|....*....|....*...
gi 490252225 190 ILGAHPLRVITQVIFPAALPALMagGSLCLLLtTNEFG 227
Cdd:COG4132 187 LLGASRWQYWRRVALPVLAPSLL--GTFLLLF-ANAFG 221
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
65-246 |
2.56e-08 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 53.45 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 65 IGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIdtFIALPTFLITLAFTfiygsagllngtLMALFAFE 144
Cdd:PRK09500 56 LQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGML--FVVMMSPDIVMAIS------------LLVLFMLL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 145 LPPVDFLysinGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTN 224
Cdd:PRK09500 122 GIQLGFW----SLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLD 197
|
170 180
....*....|....*....|..
gi 490252225 225 EFGIVLFIGAKGVNTLPMMVYS 246
Cdd:PRK09500 198 DVVVSSFVTGPSYEILPLKIYS 219
|
|
| thiP |
TIGR01253 |
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ... |
75-274 |
3.59e-08 |
|
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]
Pssm-ID: 130320 [Multi-domain] Cd Length: 519 Bit Score: 54.15 E-value: 3.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 75 AVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLnGTLMALFAFELppVDFLYSI 154
Cdd:TIGR01253 56 AFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWL-ATLANLFGLEW--QFHIYGL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 155 NGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFI-G 233
Cdd:TIGR01253 133 QGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLgG 212
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490252225 234 AKGVNTLPMMVYSKAILESDYSVACMIALINILLSLGLFML 274
Cdd:TIGR01253 213 GPQATTIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLL 253
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
52-214 |
1.58e-07 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 51.30 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 52 LETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFpGSQLVGRVIDTFIALPTFLITLAFTFIYGsag 131
Cdd:COG0600 47 LAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPPLALAPLLILWFG--- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 132 llNGTLMAlfafelppvdflysingVILAEITVFTPLVMrPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPAL 211
Cdd:COG0600 123 --IGEASK-----------------IFVIFLGAFFPILL-NTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYI 182
|
...
gi 490252225 212 MAG 214
Cdd:COG0600 183 FTG 185
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
49-212 |
6.47e-07 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 48.92 E-value: 6.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 49 NLSLETFWQVIDskRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYG 128
Cdd:COG0765 2 FFDFSVLLDYLP--LLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 129 SAGL-LNGTLMALFAFELppvdflysINGVILAEItvftplvMRplmAGLRQIDKSQLEAASILGAHPLRVITQVIFP-- 205
Cdd:COG0765 80 LLGIdLSPFVAAVIALTL--------NSAAYLAEI-------VR---AGIQSVPKGQWEAARALGLSRWQTMRRIILPqa 141
|
....*....
gi 490252225 206 --AALPALM 212
Cdd:COG0765 142 lrIILPPLG 150
|
|
| cysW |
PRK11602 |
sulfate/thiosulfate ABC transporter permease CysW; |
34-266 |
9.96e-07 |
|
sulfate/thiosulfate ABC transporter permease CysW;
Pssm-ID: 183225 Cd Length: 283 Bit Score: 48.98 E-value: 9.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 34 PLLLIAEQALRDAsgnlsLETFWQVIDSKRFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIA 113
Cdd:PRK11602 37 PMIYIFVQAFSKG-----LMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 114 LPTFLITLAFTFIYGSAGLLNGTLMALfafelpPVDFLYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGA 193
Cdd:PRK11602 112 VSPVVAGLVYLLFYGSNGPLGGWLDEH------NLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 194 HPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAK---GVNTLPMMVyskAILESDY------SVACMIALIN 264
Cdd:PRK11602 186 SGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSirgETLSLPLQI---ELLEQDYntvgsfTAAALLTLMA 262
|
..
gi 490252225 265 IL 266
Cdd:PRK11602 263 II 264
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
86-280 |
1.75e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 47.29 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 86 GSVLALIL-VFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLMALFAFelppvdflysingvilaeITV 164
Cdd:pfam00528 1 GIPLGIIAaLRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILA------------------LLG 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 165 FTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAKGVNTLPMMV 244
Cdd:pfam00528 63 WAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE 142
|
170 180 190
....*....|....*....|....*....|....*.
gi 490252225 245 yskAILESDYSVACMIALINILLSLGLFMLYRLAAA 280
Cdd:pfam00528 143 ---AILGYDYPEIQGPVLAAALILLLLNLLVDILQR 175
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
63-217 |
2.33e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 44.72 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 63 RFIGALLNTLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGsagllNGTLMALFA 142
Cdd:COG1173 73 RLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLG-----PGLLNVILA 147
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490252225 143 felppvdflysingVILAEITVFTpLVMRPLMAGLRQidKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSL 217
Cdd:COG1173 148 --------------LGLTGWPGYA-RLVRAQVLSLRE--REYVEAARALGASPLRIIFRHILPNVLPPLIVQATL 205
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
75-274 |
4.48e-05 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 44.44 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 75 AVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLNGTLmALFAFELPPVdfLYSI 154
Cdd:PRK09433 53 AFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLL-QALGLEWPFS--IYGL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 155 NGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFI-G 233
Cdd:PRK09433 130 QGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFTSFATVLTLgG 209
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490252225 234 AKGVNTLPMMVYSKAILESDYSVACMIALINILLSLGLFML 274
Cdd:PRK09433 210 GPKATTIELAIYQALSFDFDLARAALLALLQMVLCLGLVLL 250
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
71-214 |
4.64e-05 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 43.30 E-value: 4.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 71 TLQIAVFATLGCLVLGSVLALILVFIPFPGSQLVGRVIDTFIALPTFLITLAFTFIYGSAGLLnGTLmalfafelppvDF 150
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPL-GFL-----------GL 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490252225 151 LYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALP---ALMAG 214
Cdd:NF038017 69 LYTPTAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFAllaAVLAG 135
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
64-214 |
1.51e-03 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 38.88 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 64 FIGALLNTLQIAVFATLGCLVLGSVLALILV------FIPFPG-SQLVGRVIDTFIALPtFLITLA----FT-FIYGSAg 131
Cdd:COG2011 12 LLQATGETLYMVGVSTLIAVLLGLPLGVLLVltrpggLLPNPVlYRVLGVIVNIFRSIP-FIILLValipLTrLIVGTS- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490252225 132 llngtlmalfafelppvdflYSINGVILAEITVFTPLVMRPLMAGLRQIDKSQLEAASILGAHPLRVITQVIFPAALPAL 211
Cdd:COG2011 90 --------------------IGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSL 149
|
...
gi 490252225 212 MAG 214
Cdd:COG2011 150 ILG 152
|
|
| |
