NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490239194|ref|WP_004137472|]
View 

MULTISPECIES: DDRRRQL repeat protein YjdP [Klebsiella]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
 1-106 7.22e-27

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


:

Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 95.06  E-value: 7.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490239194   1 MKRYSTALLFCALSFASQLAHADIIDDAIGNIQQAINDAYQPNGSRSDDDDYDdgryQGSRQQNADRQRQYDDQRRQLED 80
Cdd:NF041443   1 MKRYSTALLFGLLSLTSQLAHADIIDDAIGNIQQAINDAYNPDDSDDDDDRRY----DDDRRRSDDRRRQYDDRRRQLED 76

                         90       100
                 ....*....|....*....|....*.
gi 490239194  81 RRRELDERQRQLDRDRRQLESDQRRL 106
Cdd:NF041443  77 RRRQLDDRQRQLDQERRQLEDEERRL 102
 
Name Accession Description Interval E-value
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
 1-106 7.22e-27

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 95.06  E-value: 7.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490239194   1 MKRYSTALLFCALSFASQLAHADIIDDAIGNIQQAINDAYQPNGSRSDDDDYDdgryQGSRQQNADRQRQYDDQRRQLED 80
Cdd:NF041443   1 MKRYSTALLFGLLSLTSQLAHADIIDDAIGNIQQAINDAYNPDDSDDDDDRRY----DDDRRRSDDRRRQYDDRRRQLED 76

                         90       100
                 ....*....|....*....|....*.
gi 490239194  81 RRRELDERQRQLDRDRRQLESDQRRL 106
Cdd:NF041443  77 RRRQLDDRQRQLDQERRQLEDEERRL 102
 
Name Accession Description Interval E-value
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
 1-106 7.22e-27

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 95.06  E-value: 7.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490239194   1 MKRYSTALLFCALSFASQLAHADIIDDAIGNIQQAINDAYQPNGSRSDDDDYDdgryQGSRQQNADRQRQYDDQRRQLED 80
Cdd:NF041443   1 MKRYSTALLFGLLSLTSQLAHADIIDDAIGNIQQAINDAYNPDDSDDDDDRRY----DDDRRRSDDRRRQYDDRRRQLED 76

                         90       100
                 ....*....|....*....|....*.
gi 490239194  81 RRRELDERQRQLDRDRRQLESDQRRL 106
Cdd:NF041443  77 RRRQLDDRQRQLDQERRQLEDEERRL 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH