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Conserved domains on  [gi|490200570|ref|WP_004099064|]
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MULTISPECIES: SMEK domain-containing protein [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMEK_N NF033859
SMEK domain; The SMEK domain is named for four genera in which multiple, diverse members of ...
 17-113 2.08e-28

SMEK domain; The SMEK domain is named for four genera in which multiple, diverse members of this uncommon family of bacterial proteins are found: Staphylococcus, Mycoplasma, Escherichia, and Klebsiella. Members of the family are highly variable in length. This domain occurs as the N-terminal region. The four scattered invariant residues in the seed alignment, which may provide a clue to function, are Glu, Asp, Gln, and Lys.


:

Pssm-ID: 411427  Cd Length: 97  Bit Score: 106.45  E-value: 2.08e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490200570  17 MKNRDKLVSFAVTLASQIKMYTRSNHNDISIAQENSLLPLINYAWGKQFENMNKVLKNHPGCDYWKPVERLGLQMTAIVA 96
Cdd:NF033859   1 KEYINNIEEKLAVLATEIELRTKLNLLDINIHSENFFIPLLNILYGYNLVNLNQIKQNFPGIDLIDEKNKIAIQVTSTAT 80

                         90
                 ....*....|....*..
gi 490200570  97 KKKYQDTLEKLRNNNRL 113
Cdd:NF033859  81 KEKIKKTLDKFIKKKYN 97
 
Name Accession Description Interval E-value
SMEK_N NF033859
SMEK domain; The SMEK domain is named for four genera in which multiple, diverse members of ...
 17-113 2.08e-28

SMEK domain; The SMEK domain is named for four genera in which multiple, diverse members of this uncommon family of bacterial proteins are found: Staphylococcus, Mycoplasma, Escherichia, and Klebsiella. Members of the family are highly variable in length. This domain occurs as the N-terminal region. The four scattered invariant residues in the seed alignment, which may provide a clue to function, are Glu, Asp, Gln, and Lys.


Pssm-ID: 411427  Cd Length: 97  Bit Score: 106.45  E-value: 2.08e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490200570  17 MKNRDKLVSFAVTLASQIKMYTRSNHNDISIAQENSLLPLINYAWGKQFENMNKVLKNHPGCDYWKPVERLGLQMTAIVA 96
Cdd:NF033859   1 KEYINNIEEKLAVLATEIELRTKLNLLDINIHSENFFIPLLNILYGYNLVNLNQIKQNFPGIDLIDEKNKIAIQVTSTAT 80

                         90
                 ....*....|....*..
gi 490200570  97 KKKYQDTLEKLRNNNRL 113
Cdd:NF033859  81 KEKIKKTLDKFIKKKYN 97
 
Name Accession Description Interval E-value
SMEK_N NF033859
SMEK domain; The SMEK domain is named for four genera in which multiple, diverse members of ...
 17-113 2.08e-28

SMEK domain; The SMEK domain is named for four genera in which multiple, diverse members of this uncommon family of bacterial proteins are found: Staphylococcus, Mycoplasma, Escherichia, and Klebsiella. Members of the family are highly variable in length. This domain occurs as the N-terminal region. The four scattered invariant residues in the seed alignment, which may provide a clue to function, are Glu, Asp, Gln, and Lys.


Pssm-ID: 411427  Cd Length: 97  Bit Score: 106.45  E-value: 2.08e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490200570  17 MKNRDKLVSFAVTLASQIKMYTRSNHNDISIAQENSLLPLINYAWGKQFENMNKVLKNHPGCDYWKPVERLGLQMTAIVA 96
Cdd:NF033859   1 KEYINNIEEKLAVLATEIELRTKLNLLDINIHSENFFIPLLNILYGYNLVNLNQIKQNFPGIDLIDEKNKIAIQVTSTAT 80

                         90
                 ....*....|....*..
gi 490200570  97 KKKYQDTLEKLRNNNRL 113
Cdd:NF033859  81 KEKIKKTLDKFIKKKYN 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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