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Conserved domains on  [gi|490019329|ref|WP_003921840|]
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hypothetical protein [Mycobacterium xenopi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ENDO3c super family cl23768
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ...
 35-148 1.44e-04

endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases


The actual alignment was detected with superfamily member cd00056:

Pssm-ID: 451531 [Multi-domain]  Cd Length: 158  Bit Score: 40.69  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490019329  35 FQLLVLCMLASKPIDATIAmRAGRELFTEGLRTPKAVLAADRQTMISAFGRAHYVRYdessASRLTDIAERVRDEYFGDl 114
Cdd:cd00056    1 FEVLVSEILSQQTTDKAVN-KAYERLFERYGPTPEALAAADEEELRELIRSLGYRRK----AKYLKELARAIVEGFGGL- 74

                         90       100       110
                 ....*....|....*....|....*....|....
gi 490019329 115 relarrsDHDVAAAARLLTKFNGIGPTGADIFLR 148
Cdd:cd00056   75 -------VLDDPDAREELLALPGVGRKTANVVLL 101
 
Name Accession Description Interval E-value
ENDO3c cd00056
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ...
 35-148 1.44e-04

endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases


Pssm-ID: 238013 [Multi-domain]  Cd Length: 158  Bit Score: 40.69  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490019329  35 FQLLVLCMLASKPIDATIAmRAGRELFTEGLRTPKAVLAADRQTMISAFGRAHYVRYdessASRLTDIAERVRDEYFGDl 114
Cdd:cd00056    1 FEVLVSEILSQQTTDKAVN-KAYERLFERYGPTPEALAAADEEELRELIRSLGYRRK----AKYLKELARAIVEGFGGL- 74

                         90       100       110
                 ....*....|....*....|....*....|....
gi 490019329 115 relarrsDHDVAAAARLLTKFNGIGPTGADIFLR 148
Cdd:cd00056   75 -------VLDDPDAREELLALPGVGRKTANVVLL 101
 
Name Accession Description Interval E-value
ENDO3c cd00056
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ...
 35-148 1.44e-04

endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases


Pssm-ID: 238013 [Multi-domain]  Cd Length: 158  Bit Score: 40.69  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490019329  35 FQLLVLCMLASKPIDATIAmRAGRELFTEGLRTPKAVLAADRQTMISAFGRAHYVRYdessASRLTDIAERVRDEYFGDl 114
Cdd:cd00056    1 FEVLVSEILSQQTTDKAVN-KAYERLFERYGPTPEALAAADEEELRELIRSLGYRRK----AKYLKELARAIVEGFGGL- 74

                         90       100       110
                 ....*....|....*....|....*....|....
gi 490019329 115 relarrsDHDVAAAARLLTKFNGIGPTGADIFLR 148
Cdd:cd00056   75 -------VLDDPDAREELLALPGVGRKTANVVLL 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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