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Conserved domains on  [gi|490010827|ref|WP_003913584|]
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MULTISPECIES: HAD family phosphatase [Mycobacterium tuberculosis complex]

Protein Classification

HAD family hydrolase( domain architecture ID 10001729)

haloacid dehalogenase (HAD) family hydrolase uses a nucleophilic aspartate in the phosphoryl transfer reaction; the HAD family includes phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably diverse set of substrates

CATH:  3.30.1240.10
EC:  3.-.-.-
Gene Ontology:  GO:0016787
SCOP:  3001890

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SerB COG0560
Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is ...
56-277 2.64e-71

Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is part of the Pathway/BioSystem: Serine biosynthesis


:

Pssm-ID: 440326 [Multi-domain]  Cd Length: 221  Bit Score: 219.71  E-value: 2.64e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  56 AAAFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVLGFLYAQAKFQLLGKEnsnDVAAGRRKALAFIEGRSVAELVALGE 135
Cdd:COG0560    4 RLAVFDLDGTLIAGESIDELARFLGRRGLVDRREVLEEVAAITERAMAGEL---DFEESLRFRVALLAGLPEEELEELAE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 136 EIYDEiiADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLVGEILHGTGKAH 215
Cdd:COG0560   81 RLFEE--VPRLYPGARELIAEHRAAGHKVAIVSGGFTFFVEPIAERLGIDHVIANELEVEDGRLTGEVVGPIVDGEGKAE 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490010827 216 AVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAINPDARLRSLA-RERGWEIRDFRIAR 277
Cdd:COG0560  159 ALRELAAELGIDLEQSYAYGDSANDLPMLEAAGLPVAVNPDPALREAAdRERGWPVLDLLGDR 221
 
Name Accession Description Interval E-value
SerB COG0560
Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is ...
56-277 2.64e-71

Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 440326 [Multi-domain]  Cd Length: 221  Bit Score: 219.71  E-value: 2.64e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  56 AAAFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVLGFLYAQAKFQLLGKEnsnDVAAGRRKALAFIEGRSVAELVALGE 135
Cdd:COG0560    4 RLAVFDLDGTLIAGESIDELARFLGRRGLVDRREVLEEVAAITERAMAGEL---DFEESLRFRVALLAGLPEEELEELAE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 136 EIYDEiiADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLVGEILHGTGKAH 215
Cdd:COG0560   81 RLFEE--VPRLYPGARELIAEHRAAGHKVAIVSGGFTFFVEPIAERLGIDHVIANELEVEDGRLTGEVVGPIVDGEGKAE 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490010827 216 AVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAINPDARLRSLA-RERGWEIRDFRIAR 277
Cdd:COG0560  159 ALRELAAELGIDLEQSYAYGDSANDLPMLEAAGLPVAVNPDPALREAAdRERGWPVLDLLGDR 221
HAD-SF-IB-hyp1 TIGR01490
HAD-superfamily subfamily IB hydrolase, TIGR01490; This hypothetical equivalog is a member of ...
57-259 1.02e-61

HAD-superfamily subfamily IB hydrolase, TIGR01490; This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273654 [Multi-domain]  Cd Length: 202  Bit Score: 194.48  E-value: 1.02e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827   57 AAFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVLGFLYAQAKFQLLgkENSNDVAAGRRKALAFIEGRSVAELVALGEE 136
Cdd:TIGR01490   1 LAFFDFDGTLTAKDTLFIFLKFLASKNILFEELRLPKVLARFEFFLN--RGLDYMAYYRAFALDALAGLLEEDVRAIVEE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  137 IYDEIIADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGT-VAESVDGIFTGRLVGEILHGTGKAH 215
Cdd:TIGR01490  79 FVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTrLEESEDGIYTGNIDGNNCKGEGKVH 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 490010827  216 AVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAINPDARL 259
Cdd:TIGR01490 159 ALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDKKL 202
HAD_PGPPase cd02612
phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 ...
57-256 3.24e-61

phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C; This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319796 [Multi-domain]  Cd Length: 195  Bit Score: 192.91  E-value: 3.24e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  57 AAFFDVDNTLVQGSSAVHFGR--GLAARHYFTYRDVLGFLYAQAKFQLLgkensndVAAGRRKALAFIEGRSVAELVALG 134
Cdd:cd02612    1 LAFFDLDGTLIAGDSFFAFLRfkGIAERRAPLEELLLLRLMALYALGRL-------DGAGMEALLGFATAGLAGELAALV 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 135 EEIYDEIIADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLVGEILHGTGKA 214
Cdd:cd02612   74 EEFVEEYILRVLYPEARELIAWHKAAGHDVVLISASPEELVAPIARKLGIDNVLGTQLETEDGRYTGRIIGPPCYGEGKV 153
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 490010827 215 HAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAINPD 256
Cdd:cd02612  154 KRLREWLAEEGIDLKDSYAYSDSINDLPMLEAVGHPVAVNPD 195
HAD pfam12710
haloacid dehalogenase-like hydrolase;
58-245 3.26e-27

haloacid dehalogenase-like hydrolase;


Pssm-ID: 432733 [Multi-domain]  Cd Length: 188  Bit Score: 104.92  E-value: 3.26e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827   58 AFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVLGFLYAQAKFQLLGKENSNDVaagRRKALAFIEGRSvAELVALGEEI 137
Cdd:pfam12710   1 ALFDLDGTLLDGDSLFLLIRALLRRGGPDLWRALLVLLLLALLRLLGRLSRAGA---RELLRALLAGLP-EEDAAELERF 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  138 YDEIIADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLV--GEILHGTGKAH 215
Cdd:pfam12710  77 VAEVALPRLHPGALELLAAHRAAGDRVVVVTGGLRPLVEPVLAELGFDEVLATELEVDDGRFTGELRliGPPCAGEGKVR 156
                         170       180       190
                  ....*....|....*....|....*....|..
gi 490010827  216 AVRSLAIREGLNLK--RCTAYSDSYNDVPMLS 245
Cdd:pfam12710 157 RLRAWLAARGLGLDlaDSVAYGDSPSDLPMLR 188
serB PRK11133
phosphoserine phosphatase; Provisional
181-252 2.57e-05

phosphoserine phosphatase; Provisional


Pssm-ID: 182988 [Multi-domain]  Cd Length: 322  Bit Score: 44.94  E-value: 2.57e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490010827 181 RLGLTGALGTVAESVDGIFTGRLVGEILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVA 252
Cdd:PRK11133 217 KLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288
 
Name Accession Description Interval E-value
SerB COG0560
Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is ...
56-277 2.64e-71

Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 440326 [Multi-domain]  Cd Length: 221  Bit Score: 219.71  E-value: 2.64e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  56 AAAFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVLGFLYAQAKFQLLGKEnsnDVAAGRRKALAFIEGRSVAELVALGE 135
Cdd:COG0560    4 RLAVFDLDGTLIAGESIDELARFLGRRGLVDRREVLEEVAAITERAMAGEL---DFEESLRFRVALLAGLPEEELEELAE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 136 EIYDEiiADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLVGEILHGTGKAH 215
Cdd:COG0560   81 RLFEE--VPRLYPGARELIAEHRAAGHKVAIVSGGFTFFVEPIAERLGIDHVIANELEVEDGRLTGEVVGPIVDGEGKAE 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490010827 216 AVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAINPDARLRSLA-RERGWEIRDFRIAR 277
Cdd:COG0560  159 ALRELAAELGIDLEQSYAYGDSANDLPMLEAAGLPVAVNPDPALREAAdRERGWPVLDLLGDR 221
HAD-SF-IB-hyp1 TIGR01490
HAD-superfamily subfamily IB hydrolase, TIGR01490; This hypothetical equivalog is a member of ...
57-259 1.02e-61

HAD-superfamily subfamily IB hydrolase, TIGR01490; This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273654 [Multi-domain]  Cd Length: 202  Bit Score: 194.48  E-value: 1.02e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827   57 AAFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVLGFLYAQAKFQLLgkENSNDVAAGRRKALAFIEGRSVAELVALGEE 136
Cdd:TIGR01490   1 LAFFDFDGTLTAKDTLFIFLKFLASKNILFEELRLPKVLARFEFFLN--RGLDYMAYYRAFALDALAGLLEEDVRAIVEE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  137 IYDEIIADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGT-VAESVDGIFTGRLVGEILHGTGKAH 215
Cdd:TIGR01490  79 FVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTrLEESEDGIYTGNIDGNNCKGEGKVH 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 490010827  216 AVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAINPDARL 259
Cdd:TIGR01490 159 ALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDKKL 202
HAD_PGPPase cd02612
phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 ...
57-256 3.24e-61

phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C; This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319796 [Multi-domain]  Cd Length: 195  Bit Score: 192.91  E-value: 3.24e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  57 AAFFDVDNTLVQGSSAVHFGR--GLAARHYFTYRDVLGFLYAQAKFQLLgkensndVAAGRRKALAFIEGRSVAELVALG 134
Cdd:cd02612    1 LAFFDLDGTLIAGDSFFAFLRfkGIAERRAPLEELLLLRLMALYALGRL-------DGAGMEALLGFATAGLAGELAALV 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 135 EEIYDEIIADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLVGEILHGTGKA 214
Cdd:cd02612   74 EEFVEEYILRVLYPEARELIAWHKAAGHDVVLISASPEELVAPIARKLGIDNVLGTQLETEDGRYTGRIIGPPCYGEGKV 153
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 490010827 215 HAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAINPD 256
Cdd:cd02612  154 KRLREWLAEEGIDLKDSYAYSDSINDLPMLEAVGHPVAVNPD 195
HAD pfam12710
haloacid dehalogenase-like hydrolase;
58-245 3.26e-27

haloacid dehalogenase-like hydrolase;


Pssm-ID: 432733 [Multi-domain]  Cd Length: 188  Bit Score: 104.92  E-value: 3.26e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827   58 AFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVLGFLYAQAKFQLLGKENSNDVaagRRKALAFIEGRSvAELVALGEEI 137
Cdd:pfam12710   1 ALFDLDGTLLDGDSLFLLIRALLRRGGPDLWRALLVLLLLALLRLLGRLSRAGA---RELLRALLAGLP-EEDAAELERF 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  138 YDEIIADKIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLV--GEILHGTGKAH 215
Cdd:pfam12710  77 VAEVALPRLHPGALELLAAHRAAGDRVVVVTGGLRPLVEPVLAELGFDEVLATELEVDDGRFTGELRliGPPCAGEGKVR 156
                         170       180       190
                  ....*....|....*....|....*....|..
gi 490010827  216 AVRSLAIREGLNLK--RCTAYSDSYNDVPMLS 245
Cdd:pfam12710 157 RLRAWLAARGLGLDlaDSVAYGDSPSDLPMLR 188
HAD-SF-IB TIGR01488
Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model ...
57-247 7.53e-15

Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273653 [Multi-domain]  Cd Length: 177  Bit Score: 71.23  E-value: 7.53e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827   57 AAFFDVDNTLVQGSSAVHFgrglaARHYFTYRDVLGFLYAQAkfqlLGKENSNDVAAGRRKALAfieGRSVAELVAlgEE 136
Cdd:TIGR01488   1 LAIFDFDGTLTRQDSLIDL-----LAKLLGTNDEVIELTRLA----PSGRISFEDALGRRLALL---HRSRSEEVA--KE 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  137 IYDEIIADKiwDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVD-GIFTGRLVGEILH-GTGKA 214
Cdd:TIGR01488  67 FLARQVALR--PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDnGLLTGPIEGQVNPeGECKG 144
                         170       180       190
                  ....*....|....*....|....*....|...
gi 490010827  215 HAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLV 247
Cdd:TIGR01488 145 KVLKELLEESKITLKKIIAVGDSVNDLPMLKLA 177
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
57-248 6.78e-13

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 66.07  E-value: 6.78e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827   57 AAFFDVDNTLVQGSSAVHFG-RGLAARHYFTyrdvLGFLYAQAKFQLLGKENSNDVAAGRRKALAFIEGRSV-------- 127
Cdd:pfam00702   3 AVVFDLDGTLTDGEPVVTEAiAELASEHPLA----KAIVAAAEDLPIPVEDFTARLLLGKRDWLEELDILRGlvetleae 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  128 AELVALGEEIYDEIIAD--KIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGrlvg 205
Cdd:pfam00702  79 GLTVVLVELLGVIALADelKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGK---- 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 490010827  206 eiLHGTGKAHAVRSLaireGLNLKRCTAYSDSYNDVPMLSLVG 248
Cdd:pfam00702 155 --PKPEIYLAALERL----GVKPEEVLMVGDGVNDIPAAKAAG 191
HAD_PSP cd07500
phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces ...
127-254 1.34e-11

phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p; This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319803 [Multi-domain]  Cd Length: 180  Bit Score: 62.18  E-value: 1.34e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 127 VAELVALGEEIYDEIIAD-KIWDGTRELTQMHLDAGQQVWLITATPYELAATIARRLGLTGALGTVAESVDGIFTGRLVG 205
Cdd:cd07500   51 VALLKGLPESVLDEVYERlTLTPGAEELIQTLKAKGYKTAVVSGGFTYFTDRLAEELGLDYAFANELEIKDGKLTGKVLG 130
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 490010827 206 EILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAIN 254
Cdd:cd07500  131 PIVDAQRKAETLQELAARLGIPLEQTVAVGDGANDLPMLKAAGLGIAFH 179
Cof-subfamily TIGR00099
Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; This subfamily of ...
199-264 7.51e-10

Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 272905 [Multi-domain]  Cd Length: 256  Bit Score: 58.43  E-value: 7.51e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490010827  199 FTGRLVGEILH-GTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAI-NPDARLRSLAR 264
Cdd:TIGR00099 174 SSGPYSIEITAkGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMgNADEELKALAD 241
Hydrolase_3 pfam08282
haloacid dehalogenase-like hydrolase; This family contains haloacid dehalogenase-like ...
206-265 1.47e-07

haloacid dehalogenase-like hydrolase; This family contains haloacid dehalogenase-like hydrolase enzymes.


Pssm-ID: 429897 [Multi-domain]  Cd Length: 255  Bit Score: 51.47  E-value: 1.47e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490010827  206 EILH-GTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAI-NPDARLRSLARE 265
Cdd:pfam08282 180 EIMPkGVSKGTALKALAKHLNISLEEVIAFGDGENDIEMLEAAGLGVAMgNASPEVKAAADY 241
Cof COG0561
Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases [Coenzyme transport ...
206-265 6.01e-07

Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases [Coenzyme transport and metabolism, General function prediction only];


Pssm-ID: 440327 [Multi-domain]  Cd Length: 192  Bit Score: 48.98  E-value: 6.01e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490010827 206 EILH-GTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAI-NPDARLRSLARE 265
Cdd:COG0561  114 EILPkGVSKGSALKKLAERLGIPPEEVIAFGDSGNDLEMLEAAGLGVAMgNAPPEVKAAADY 175
HAD_Pase cd07516
phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the ...
206-265 1.51e-06

phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily; Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319818 [Multi-domain]  Cd Length: 253  Bit Score: 48.36  E-value: 1.51e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490010827 206 EILH-GTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAI-NPDARLRSLARE 265
Cdd:cd07516  176 EIMPkGVSKGNALKKLAEYLGISLEEVIAFGDNENDLSMLEYAGLGVAMgNAIDEVKEAADY 237
HAD-SF-IIB TIGR01484
HAD-superfamily hydrolase, subfamily IIB; This subfamily falls within the Haloacid ...
57-253 1.89e-05

HAD-superfamily hydrolase, subfamily IIB; This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterized by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (TIGR01460) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamily's Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing OMNI|TC0379 and OMNI|SA2196 whose relationship to the other groups is unclear. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273651 [Multi-domain]  Cd Length: 207  Bit Score: 44.68  E-value: 1.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827   57 AAFFDVDNTLVQGSSAVHFGRGLAARHYFTYRDVL-------GFLYAQAKFQ------LLGKENSNDVAAGRRKAlaFIE 123
Cdd:TIGR01484   1 LLFFDLDGTLLDPNAHELSPETIEALERLREAGVKvvivtgrSLAEIKELLKqlnlplPLIAENGALIFYPGEIL--YIE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827  124 GRSVAELVAlgEEIYDEI--IADKIWDGTRELTQMHLDAGQQ-VWLITATPYELAATIARRLGLTGAlgtVAESVDGIFT 200
Cdd:TIGR01484  79 PSDVFEEIL--GIKFEEIgaELKSLSEHYVGTFIEDKAIAVAiHYVGAELGQELDSKMRERLEKIGR---NDLELEAIYS 153
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 490010827  201 GRLVGEILH-GTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAI 253
Cdd:TIGR01484 154 GKTDLEVLPaGVNKGSALQALLQELNGKKDEILAFGDSGNDEEMFEVAGLAVAV 207
serB PRK11133
phosphoserine phosphatase; Provisional
181-252 2.57e-05

phosphoserine phosphatase; Provisional


Pssm-ID: 182988 [Multi-domain]  Cd Length: 322  Bit Score: 44.94  E-value: 2.57e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490010827 181 RLGLTGALGTVAESVDGIFTGRLVGEILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVA 252
Cdd:PRK11133 217 KLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288
HAD_Pase cd07514
phosphatase, similar to Thermoplasma acidophilum TA0175 phosphoglycolate phosphatase (PCPase), ...
159-264 2.71e-05

phosphatase, similar to Thermoplasma acidophilum TA0175 phosphoglycolate phosphatase (PCPase), and Pyrococcus horikoshii PH1421, a magnesium-dependent phosphatase; belongs to the haloacid dehalogenase-like superfamily; Thermoplasma acidophilum TA0175 phosphoglycolate phosphatase (PGPase) catalyzes the magnesium-dependent dephosphorylation of phosphoglycolate. This family also includes Pyrococcus horikoshii OT3 PH1421, a magnesium-dependent phosphatase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319816 [Multi-domain]  Cd Length: 139  Bit Score: 43.35  E-value: 2.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 159 DAGQQVWLITATPYELAATIARRLGLTGalGTVAEsvDGiftgrlvgeilhGTGKAHAVRSLAIREGLNLKRCTAYSDSY 238
Cdd:cd07514   30 KAGIPVVLVTGNSLPVARALAKYLGLSG--PVVAE--NG------------GVDKGTGLEKLAERLGIDPEEVLAIGDSE 93
                         90       100
                 ....*....|....*....|....*..
gi 490010827 239 NDVPMLSLVGTAVAI-NPDARLRSLAR 264
Cdd:cd07514   94 NDIEMFKVAGFKVAVaNADEELKEAAD 120
HAD_like cd01427
Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily ...
147-253 4.97e-05

Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others. This superfamily includes a variety of enzymes that catalyze the cleavage of substrate C-Cl, P-C, and P-OP bonds via nucleophilic substitution pathways. All of which use a nucleophilic aspartate in their phosphoryl transfer reaction. They catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319763 [Multi-domain]  Cd Length: 106  Bit Score: 41.61  E-value: 4.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 147 WDGT---RELTQMHLDAGQQVWLITATPYELAATIARRLGLTgalgtvaESVDGIFTGRLVGeilHGTGKAHAVRSLAIR 223
Cdd:cd01427    6 LDGTllaVELLKRLRAAGIKLAIVTNRSREALRALLEKLGLG-------DLFDGIIGSDGGG---TPKPKPKPLLLLLLK 75
                         90       100       110
                 ....*....|....*....|....*....|.
gi 490010827 224 EGLNLKRCTAYSDSYNDVPMLSLVG-TAVAI 253
Cdd:cd01427   76 LGVDPEEVLFVGDSENDIEAARAAGgRTVAV 106
HAD_HPP cd07517
phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate ...
207-252 3.77e-04

phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily; Bacteroides thetaiotaomicron VPI-5482 BT4131 is a phosphatase with preference for hexose phosphates. In addition this family includes uncharacterized Bacillus subtilis YkrA, a putative phosphatase and uncharacterized Streptococcus pyogenes MGAS10394 a putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319819 [Multi-domain]  Cd Length: 213  Bit Score: 41.05  E-value: 3.77e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 490010827 207 ILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVA 252
Cdd:cd07517  136 IPKGGSKAKGIQKVIEHLGIKKEETMAFGDGLNDIEMLEAVGIGIA 181
HAD_SPP cd02605
sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP; Sucrose-phosphatase (SPP; EC 3. ...
209-266 1.00e-03

sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP; Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319792 [Multi-domain]  Cd Length: 245  Bit Score: 40.03  E-value: 1.00e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 490010827 209 HGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVGTAVAI-NPDARLRSLARER 266
Cdd:cd02605  166 LGAGKGEALRYLQEKWNFPPERTLVCGDSGNDIALLSTGTRGVIVgNAQPELLKWADRV 224
YedP COG3769
Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily [Carbohydrate transport and ...
164-268 3.32e-03

Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 442983 [Multi-domain]  Cd Length: 268  Bit Score: 38.27  E-value: 3.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 164 VWLITATPYELAATIARRLGLTGALGtvaesvdgiftGRLVgEILHGTGKAHAVRSLA--IREGLNLKRCT-AYSDSYND 240
Cdd:COG3769  152 LWLGSDEALERFIAALAALGLTVLRG-----------GRFL-HLMGGADKGKAVRWLVeqYRQRFGKNVVTiALGDSPND 219
                         90       100
                 ....*....|....*....|....*....
gi 490010827 241 VPMLSLVGTAVAI-NPDARLRSLARERGW 268
Cdd:COG3769  220 IPMLEAADIAVVIrSPHGAPPELEDKPRV 248
PRK10976 PRK10976
putative hydrolase; Provisional
210-248 4.65e-03

putative hydrolase; Provisional


Pssm-ID: 182878 [Multi-domain]  Cd Length: 266  Bit Score: 38.11  E-value: 4.65e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 490010827 210 GTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLSLVG 248
Cdd:PRK10976 188 GVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAG 226
PRK08238 PRK08238
UbiA family prenyltransferase;
159-282 6.72e-03

UbiA family prenyltransferase;


Pssm-ID: 236195 [Multi-domain]  Cd Length: 479  Bit Score: 37.93  E-value: 6.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490010827 159 DAGQQVWLITATPYELAATIARRLGL-TGALGTvaesvDGiftgrlvGEILHGTGKAHAVRSlaiREGlnlKRCTAYS-D 236
Cdd:PRK08238  86 AAGRKLVLATASDERLAQAVAAHLGLfDGVFAS-----DG-------TTNLKGAAKAAALVE---AFG---ERGFDYAgN 147
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 490010827 237 SYNDVPMLSLVGTAVAINPDARLRSLARERGWEIRDF-------RIARKAARI 282
Cdd:PRK08238 148 SAADLPVWAAARRAIVVGASPGVARAARALGPVERVFpprparlRTWLKALRV 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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