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Conserved domains on  [gi|489979504|ref|WP_003882618|]
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MULTISPECIES: DUF6188 family protein [Mycobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6188 pfam19686
Family of unknown function (DUF6188); This entry represents a member of a biosynthetic gene ...
 2-128 4.33e-58

Family of unknown function (DUF6188); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus. This family appears to be predominantly found in bacteria.


:

Pssm-ID: 466144  Cd Length: 121  Bit Score: 175.86  E-value: 4.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489979504    2 HTPWIERCTVQRVSLRDGLVLDLDDYNELVIATPIRLTLPPIGssypeeQVLIDPGNVSVQQRPLLDLAGAVCTGAWCDE 81
Cdd:pfam19686   1 MILWLRGCTVTRIRLDFGLVLSLDDGNELVIETPFRLTLPAGG------GHLIDPETDAPEVRPLLALLGAVVTSATVDD 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 489979504   82 GGGLHLGFSRGHRIDVAPQEAATSWELYGKRHGYMACLPRGRVRVVR 128
Cdd:pfam19686  75 SGALRLVFDDGHRLDVPPDPDYEAWELTGPGGGYVVCLPGGELAVWR 121
 
Name Accession Description Interval E-value
DUF6188 pfam19686
Family of unknown function (DUF6188); This entry represents a member of a biosynthetic gene ...
 2-128 4.33e-58

Family of unknown function (DUF6188); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus. This family appears to be predominantly found in bacteria.


Pssm-ID: 466144  Cd Length: 121  Bit Score: 175.86  E-value: 4.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489979504    2 HTPWIERCTVQRVSLRDGLVLDLDDYNELVIATPIRLTLPPIGssypeeQVLIDPGNVSVQQRPLLDLAGAVCTGAWCDE 81
Cdd:pfam19686   1 MILWLRGCTVTRIRLDFGLVLSLDDGNELVIETPFRLTLPAGG------GHLIDPETDAPEVRPLLALLGAVVTSATVDD 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 489979504   82 GGGLHLGFSRGHRIDVAPQEAATSWELYGKRHGYMACLPRGRVRVVR 128
Cdd:pfam19686  75 SGALRLVFDDGHRLDVPPDPDYEAWELTGPGGGYVVCLPGGELAVWR 121
 
Name Accession Description Interval E-value
DUF6188 pfam19686
Family of unknown function (DUF6188); This entry represents a member of a biosynthetic gene ...
 2-128 4.33e-58

Family of unknown function (DUF6188); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus. This family appears to be predominantly found in bacteria.


Pssm-ID: 466144  Cd Length: 121  Bit Score: 175.86  E-value: 4.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489979504    2 HTPWIERCTVQRVSLRDGLVLDLDDYNELVIATPIRLTLPPIGssypeeQVLIDPGNVSVQQRPLLDLAGAVCTGAWCDE 81
Cdd:pfam19686   1 MILWLRGCTVTRIRLDFGLVLSLDDGNELVIETPFRLTLPAGG------GHLIDPETDAPEVRPLLALLGAVVTSATVDD 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 489979504   82 GGGLHLGFSRGHRIDVAPQEAATSWELYGKRHGYMACLPRGRVRVVR 128
Cdd:pfam19686  75 SGALRLVFDDGHRLDVPPDPDYEAWELTGPGGGYVVCLPGGELAVWR 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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