|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15090 |
PRK15090 |
DNA-binding transcriptional regulator KdgR; Provisional |
4-260 |
0e+00 |
|
DNA-binding transcriptional regulator KdgR; Provisional
Pssm-ID: 185046 [Multi-domain] Cd Length: 257 Bit Score: 550.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 4 ADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARA 83
Cdd:PRK15090 1 ADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 84 LQNVDLIRSADIQMRELSRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQI 163
Cdd:PRK15090 81 LQNVDLIRSADIQMREISRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEVREI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 164 LDGVEYKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVA 243
Cdd:PRK15090 161 LSGVEFKRSTEKTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERKQEYVA 240
|
250
....*....|....*..
gi 489956596 244 ILHTAARKISEQMGYND 260
Cdd:PRK15090 241 MLHTAARKISEQMGYHD 257
|
|
| IclR |
COG1414 |
DNA-binding transcriptional regulator, IclR family [Transcription]; |
10-260 |
1.85e-98 |
|
DNA-binding transcriptional regulator, IclR family [Transcription];
Pssm-ID: 441024 [Multi-domain] Cd Length: 253 Bit Score: 288.26 E-value: 1.85e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 10 PDSVSSVLKVFGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVD 88
Cdd:COG1414 2 RSGVQSLERALAILEALAEAgGGLSLSELARRLGLPKSTVHRLLATLEEEGYVERDPEGGRYRLGPRLLELGSAALRRLD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 89 LIRSADIQMRELSRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQILDGVE 168
Cdd:COG1414 82 LRRLARPVLEELAEETGETVHLAVLDGDEVVYVARVEGPRPVRVSSRVGSRLPLHATASGKALLAFLPEEELEALLARAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 169 YKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVAILHTA 248
Cdd:COG1414 162 LPRFTPNTITDPAALRAELAEIRERGYAVDDGELEPGVRAVAAPVFDADGRVVAALSVSGPSSRLTEERLEELAPALRAA 241
|
250
....*....|..
gi 489956596 249 ARKISEQMGYND 260
Cdd:COG1414 242 AREISRALGYRP 253
|
|
| IclR |
pfam01614 |
Bacterial transcriptional regulator; This family of bacterial transcriptional regulators ... |
128-253 |
9.51e-57 |
|
Bacterial transcriptional regulator; This family of bacterial transcriptional regulators includes the glycerol operon regulatory protein and acetate operon repressor both of which are members of the iclR family. These proteins have a Helix-Turn-Helix motif at the N-terminus. However this family covers the C-terminal region that binds to regulatory substrates including Glyoxylate, allantoin/ate, indole, aromatic hydrocarbons, sugar acids, succinic semialdehyde, benzoate derivatives, ascorbic acid, glycerol-3-phosphate, glyceraldehyde-3-phosphate and pyruvate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 426346 [Multi-domain] Cd Length: 128 Bit Score: 177.86 E-value: 9.51e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 128 YNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQILDGVEYKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLR 207
Cdd:pfam01614 1 RRLRAYSAIGRRLPLHATAIGKALLAWLDEEELEAYLERYELKRLTPNTITDPEALLEELAQIREQGYAVDREEHELGVR 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 489956596 208 CIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVAILHTAARKIS 253
Cdd:pfam01614 81 CIAAPIFDASGDVVAAISVSGPTSRLTEEELDYLLALLREAARKIS 126
|
|
| pcaR_pcaU |
TIGR02431 |
beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Member of this ... |
10-256 |
3.42e-54 |
|
beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions]
Pssm-ID: 131484 [Multi-domain] Cd Length: 248 Bit Score: 175.14 E-value: 3.42e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 10 PDSVSSVLKVFGILQALGEER-EIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGEseKYSLTLKLFELGARALQNVD 88
Cdd:TIGR02431 2 RDFVASLARGLAVIEAFGAERpRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDGR--LFWLTPRVLRLGYAYLSSAP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 89 LIRSADIQMRELSRLTKETIHLGALDEDSIVYI-----HKIDSmYNLRmysrIGRRNPLYSTAIGKVLLAWRDREEVKQI 163
Cdd:TIGR02431 80 LPKVAQPLLERLSAQTHESCSVAVLDGDEIVYVarsptHRIMS-VGLS----VGTRLPAYCTSMGRVLLAGLDDEELDEY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 164 LDGVEYKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHE-YV 242
Cdd:TIGR02431 155 LARSTLQALTPRTITDRDALLAELLAVRAQGYALVDQELELGLRSIAVPIRNARGQVVAALNVSTHAARTTPEELVErIL 234
|
250
....*....|....
gi 489956596 243 AILHTAARKISEQM 256
Cdd:TIGR02431 235 PLLLEAARELRQLL 248
|
|
| HTH_ICLR |
smart00346 |
helix_turn_helix isocitrate lyase regulation; |
13-102 |
2.96e-28 |
|
helix_turn_helix isocitrate lyase regulation;
Pssm-ID: 214629 [Multi-domain] Cd Length: 91 Bit Score: 103.43 E-value: 2.96e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 13 VSSVLKVFGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVDLIR 91
Cdd:smart00346 1 IQSLERGLAVLRALAEEpGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLSSLDLRE 80
|
90
....*....|.
gi 489956596 92 SADIQMRELSR 102
Cdd:smart00346 81 VAKPVLEELSR 91
|
|
| HTH_ARSR |
cd00090 |
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
22-88 |
3.58e-04 |
|
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 38.43 E-value: 3.58e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489956596 22 ILQALgEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVD 88
Cdd:cd00090 12 ILRLL-LEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTDAERLLALLESLL 77
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15090 |
PRK15090 |
DNA-binding transcriptional regulator KdgR; Provisional |
4-260 |
0e+00 |
|
DNA-binding transcriptional regulator KdgR; Provisional
Pssm-ID: 185046 [Multi-domain] Cd Length: 257 Bit Score: 550.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 4 ADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARA 83
Cdd:PRK15090 1 ADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 84 LQNVDLIRSADIQMRELSRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQI 163
Cdd:PRK15090 81 LQNVDLIRSADIQMREISRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEVREI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 164 LDGVEYKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVA 243
Cdd:PRK15090 161 LSGVEFKRSTEKTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERKQEYVA 240
|
250
....*....|....*..
gi 489956596 244 ILHTAARKISEQMGYND 260
Cdd:PRK15090 241 MLHTAARKISEQMGYHD 257
|
|
| IclR |
COG1414 |
DNA-binding transcriptional regulator, IclR family [Transcription]; |
10-260 |
1.85e-98 |
|
DNA-binding transcriptional regulator, IclR family [Transcription];
Pssm-ID: 441024 [Multi-domain] Cd Length: 253 Bit Score: 288.26 E-value: 1.85e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 10 PDSVSSVLKVFGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVD 88
Cdd:COG1414 2 RSGVQSLERALAILEALAEAgGGLSLSELARRLGLPKSTVHRLLATLEEEGYVERDPEGGRYRLGPRLLELGSAALRRLD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 89 LIRSADIQMRELSRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQILDGVE 168
Cdd:COG1414 82 LRRLARPVLEELAEETGETVHLAVLDGDEVVYVARVEGPRPVRVSSRVGSRLPLHATASGKALLAFLPEEELEALLARAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 169 YKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVAILHTA 248
Cdd:COG1414 162 LPRFTPNTITDPAALRAELAEIRERGYAVDDGELEPGVRAVAAPVFDADGRVVAALSVSGPSSRLTEERLEELAPALRAA 241
|
250
....*....|..
gi 489956596 249 ARKISEQMGYND 260
Cdd:COG1414 242 AREISRALGYRP 253
|
|
| IclR |
pfam01614 |
Bacterial transcriptional regulator; This family of bacterial transcriptional regulators ... |
128-253 |
9.51e-57 |
|
Bacterial transcriptional regulator; This family of bacterial transcriptional regulators includes the glycerol operon regulatory protein and acetate operon repressor both of which are members of the iclR family. These proteins have a Helix-Turn-Helix motif at the N-terminus. However this family covers the C-terminal region that binds to regulatory substrates including Glyoxylate, allantoin/ate, indole, aromatic hydrocarbons, sugar acids, succinic semialdehyde, benzoate derivatives, ascorbic acid, glycerol-3-phosphate, glyceraldehyde-3-phosphate and pyruvate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 426346 [Multi-domain] Cd Length: 128 Bit Score: 177.86 E-value: 9.51e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 128 YNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQILDGVEYKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLR 207
Cdd:pfam01614 1 RRLRAYSAIGRRLPLHATAIGKALLAWLDEEELEAYLERYELKRLTPNTITDPEALLEELAQIREQGYAVDREEHELGVR 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 489956596 208 CIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVAILHTAARKIS 253
Cdd:pfam01614 81 CIAAPIFDASGDVVAAISVSGPTSRLTEEELDYLLALLREAARKIS 126
|
|
| pcaR_pcaU |
TIGR02431 |
beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Member of this ... |
10-256 |
3.42e-54 |
|
beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions]
Pssm-ID: 131484 [Multi-domain] Cd Length: 248 Bit Score: 175.14 E-value: 3.42e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 10 PDSVSSVLKVFGILQALGEER-EIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGEseKYSLTLKLFELGARALQNVD 88
Cdd:TIGR02431 2 RDFVASLARGLAVIEAFGAERpRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDGR--LFWLTPRVLRLGYAYLSSAP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 89 LIRSADIQMRELSRLTKETIHLGALDEDSIVYI-----HKIDSmYNLRmysrIGRRNPLYSTAIGKVLLAWRDREEVKQI 163
Cdd:TIGR02431 80 LPKVAQPLLERLSAQTHESCSVAVLDGDEIVYVarsptHRIMS-VGLS----VGTRLPAYCTSMGRVLLAGLDDEELDEY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 164 LDGVEYKRSTDRTITSTDELLSVLDNVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHE-YV 242
Cdd:TIGR02431 155 LARSTLQALTPRTITDRDALLAELLAVRAQGYALVDQELELGLRSIAVPIRNARGQVVAALNVSTHAARTTPEELVErIL 234
|
250
....*....|....
gi 489956596 243 AILHTAARKISEQM 256
Cdd:TIGR02431 235 PLLLEAARELRQLL 248
|
|
| PRK10163 |
PRK10163 |
HTH-type transcriptional repressor AllR; |
21-262 |
2.69e-33 |
|
HTH-type transcriptional repressor AllR;
Pssm-ID: 182279 [Multi-domain] Cd Length: 271 Bit Score: 122.04 E-value: 2.69e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 21 GILQALgeEREIG---ITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQM 97
Cdd:PRK10163 29 AILQYL--EKSGGsssVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVAGPFM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 98 RELSRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQILDGVEYKRSTDRTI 177
Cdd:PRK10163 107 RRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKALLYPLAEEELMSIILQTGLQQFTPTTL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 178 TSTDELLSVLDNVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVAILHTAARKISEQMG 257
Cdd:PRK10163 187 VDMPTLLKDLEQARELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALG 266
|
....*
gi 489956596 258 YNDYP 262
Cdd:PRK10163 267 LKAHP 271
|
|
| PRK11569 |
PRK11569 |
glyoxylate bypass operon transcriptional repressor IclR; |
32-257 |
2.89e-33 |
|
glyoxylate bypass operon transcriptional repressor IclR;
Pssm-ID: 183206 [Multi-domain] Cd Length: 274 Bit Score: 121.84 E-value: 2.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 32 IGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSRLTKETIHLG 111
Cdd:PRK11569 44 VALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFIVGSSFLQSRNLLAIVHPILRNLMEDSGETVNLA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 112 ALDED--SIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDREEVKQILDGVEYKRSTDRTITSTDELLSVLDN 189
Cdd:PRK11569 124 VLDQSdhQAIIIDQVQCTALMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQ 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489956596 190 VREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHEYVAILHTAARKISEQMG 257
Cdd:PRK11569 204 TRKRGYSFDDEEHALGLRCVAACIFDEHREPFAAISISGPISRITDDRVTELGAMVIKAAKEVTLAYG 271
|
|
| HTH_ICLR |
smart00346 |
helix_turn_helix isocitrate lyase regulation; |
13-102 |
2.96e-28 |
|
helix_turn_helix isocitrate lyase regulation;
Pssm-ID: 214629 [Multi-domain] Cd Length: 91 Bit Score: 103.43 E-value: 2.96e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 13 VSSVLKVFGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVDLIR 91
Cdd:smart00346 1 IQSLERGLAVLRALAEEpGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLSSLDLRE 80
|
90
....*....|.
gi 489956596 92 SADIQMRELSR 102
Cdd:smart00346 81 VAKPVLEELSR 91
|
|
| PRK09834 |
PRK09834 |
DNA-binding transcriptional regulator; |
9-256 |
2.89e-18 |
|
DNA-binding transcriptional regulator;
Pssm-ID: 182100 [Multi-domain] Cd Length: 263 Bit Score: 81.58 E-value: 2.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 9 QPDSVSSVLKVFGILQALGE-EREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGAralQNV 87
Cdd:PRK09834 3 EYKTVRGLSRGLMVLRALNRlDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQLSE---GFR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 88 DLIRSADIQMRELSRLTKET---IHLGALDEDSIVYIHKIDSMYNLRMY-SRIGRRNPLYSTAIGKVLLAWRDREEVKQI 163
Cdd:PRK09834 80 DEQWISALAAPLLGDLLRRVvwpTDLTTLDVDAMVIRETTHRFSPLSFHrAMVGRRLPLLLTAAGRAYLAFCPEEEREAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 164 L------DGVEYKRSTDRtitstDELLSVLDNVREQGYGED--NEEQEEGLRCIGVPVFDRfGVVIAGLSISFPTLRFS- 234
Cdd:PRK09834 160 LellasrPGDEDQLARDP-----ARLEAMLARTRKRGYGENygGWDQQPKIASIAVPVRSG-QRVLGCLNLVYIASAMSi 233
|
250 260
....*....|....*....|..
gi 489956596 235 EERLHEYVAILHTAARKISEQM 256
Cdd:PRK09834 234 EEAAKRYLPALQRAAKQIEAGV 255
|
|
| HTH_IclR |
pfam09339 |
IclR helix-turn-helix domain; |
15-65 |
8.72e-12 |
|
IclR helix-turn-helix domain;
Pssm-ID: 430539 [Multi-domain] Cd Length: 52 Bit Score: 58.57 E-value: 8.72e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 489956596 15 SVLKVFGILQALGEERE-IGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEG 65
Cdd:pfam09339 1 SLDRALAILDALAEAPGpLTLTEIARRTGLPKSTAHRLLQTLVELGYVEQDP 52
|
|
| HTH_ARSR |
cd00090 |
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
22-88 |
3.58e-04 |
|
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 38.43 E-value: 3.58e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489956596 22 ILQALgEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGARALQNVD 88
Cdd:cd00090 12 ILRLL-LEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTDAERLLALLESLL 77
|
|
| HTH_ARSR |
smart00418 |
helix_turn_helix, Arsenical Resistance Operon Repressor; |
22-73 |
5.91e-04 |
|
helix_turn_helix, Arsenical Resistance Operon Repressor;
Pssm-ID: 197713 [Multi-domain] Cd Length: 66 Bit Score: 37.19 E-value: 5.91e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 489956596 22 ILQALgEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQ--EGESEKYSLT 73
Cdd:smart00418 2 ILKLL-AEGELCVCELAEILGLSQSTVSHHLKKLREAGLVESrrEGKRVYYSLT 54
|
|
| HTH_MARR |
smart00347 |
helix_turn_helix multiple antibiotic resistance protein; |
20-106 |
2.77e-03 |
|
helix_turn_helix multiple antibiotic resistance protein;
Pssm-ID: 197670 [Multi-domain] Cd Length: 101 Bit Score: 36.42 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489956596 20 FGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVA-QEGESEKYSLTLKLFELGARALQNVDLIRSADIQmR 98
Cdd:smart00347 13 FLVLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLVRrEPSPEDRRSVLVSLTEEGRELIEQLLEARSETLA-E 91
|
....*...
gi 489956596 99 ELSRLTKE 106
Cdd:smart00347 92 LLAGLTAE 99
|
|
| MarR |
COG1846 |
DNA-binding transcriptional regulator, MarR family [Transcription]; |
20-64 |
4.56e-03 |
|
DNA-binding transcriptional regulator, MarR family [Transcription];
Pssm-ID: 441451 [Multi-domain] Cd Length: 142 Bit Score: 36.49 E-value: 4.56e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489956596 20 FGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQE 64
Cdd:COG1846 41 FRVLAALAEAGGLTQSELAERLGLTKSTVSRLLDRLEEKGLVERE 85
|
|
| HTH_24 |
pfam13412 |
Winged helix-turn-helix DNA-binding; |
20-61 |
9.08e-03 |
|
Winged helix-turn-helix DNA-binding;
Pssm-ID: 404317 [Multi-domain] Cd Length: 45 Bit Score: 33.56 E-value: 9.08e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 489956596 20 FGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYV 61
Cdd:pfam13412 4 RKILNLLQENPRISQRELAERLGLSPSTVNRRLKRLEEEGVI 45
|
|
| |
