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Conserved domains on  [gi|489935578|ref|WP_003838886|]
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MULTISPECIES: fimbrial protein [Citrobacter]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-181 5.54e-41

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 135.94  E-value: 5.54e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578   1 MPGWRILLLFIFISPAWVLADTHrlvstpGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHL 80
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAAD------GTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  81 LGCSLGDSQHpgslfqrANITFSGAPDSDNPDYLSVQSET--ENLAIEIYDGKGQQIHLGEPSPDYALNP-GKNTLNFTA 157
Cdd:COG3539   75 TNCDAGTSNS-------VKVTFTGTADSANPGLLANTGSGgaSGVGIQLLDSDGTPIPLGTPSSAVTLTSnGSATLPFYA 147

                        170       180
                 ....*....|....*....|....
gi 489935578 158 YLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:COG3539  148 RYVATGATVTAGSFNATATFTIDY 171
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-181 5.54e-41

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 135.94  E-value: 5.54e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578   1 MPGWRILLLFIFISPAWVLADTHrlvstpGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHL 80
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAAD------GTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  81 LGCSLGDSQHpgslfqrANITFSGAPDSDNPDYLSVQSET--ENLAIEIYDGKGQQIHLGEPSPDYALNP-GKNTLNFTA 157
Cdd:COG3539   75 TNCDAGTSNS-------VKVTFTGTADSANPGLLANTGSGgaSGVGIQLLDSDGTPIPLGTPSSAVTLTSnGSATLPFYA 147

                        170       180
                 ....*....|....*....|....
gi 489935578 158 YLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:COG3539  148 RYVATGATVTAGSFNATATFTIDY 171
PRK15210 PRK15210
fimbrial protein;
30-182 2.45e-16

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 73.19  E-value: 2.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  30 GKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSL--GDSQHPGSL--FQRANITFSGA 105
Cdd:PRK15210  35 GKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCAFdpNIPDTAGSAgkMSKVTVSFSGT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578 106 PDSDNPDYLSVQSeTENLAIEIYDGKGQQ-IHLGEPSPD---YALNPGKNTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15210 115 ANTSKKAYTTSGS-AQHVGVQLLKSDNTSiIEPNTPMPDgdaQQLQAGNNELNFFARLIALDNGVTPGDFNASVTYTLKY 193


                 .
gi 489935578 182 L 182
Cdd:PRK15210 194 L 194
Fimbrial pfam00419
Fimbrial protein;
34-181 1.07e-12

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 62.45  E-value: 1.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578   34 MRGNI--IEAACYVDPRDrSLLVEFDDLSARDISGKPEKVSAHDFSIHlLGCSLGDSQhpgslfQRANITFSGAPDSDNP 111
Cdd:pfam00419   3 FTGTVtrVPATCKITAGT-PIEVDFGQIPVNELNAGGEGSRQKPFSIT-LECSSGSSA------VKVTVGLFGTADASSP 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489935578  112 DYLSVQSE---TENLAIEIYDGKGQQIHLGEPSPDYALNPG---KNTLNFTAYLISRDG-RMTSGEFTAVTHFVVNY 181
Cdd:pfam00419  75 NLLLTGNGagaATGVGIRLYDANGGALPPNNGTSSIPVSATaavATGITFTASLVATTGgTPTAGDFNATATIVVDY 151
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-181 5.54e-41

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 135.94  E-value: 5.54e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578   1 MPGWRILLLFIFISPAWVLADTHrlvstpGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHL 80
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAAD------GTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  81 LGCSLGDSQHpgslfqrANITFSGAPDSDNPDYLSVQSET--ENLAIEIYDGKGQQIHLGEPSPDYALNP-GKNTLNFTA 157
Cdd:COG3539   75 TNCDAGTSNS-------VKVTFTGTADSANPGLLANTGSGgaSGVGIQLLDSDGTPIPLGTPSSAVTLTSnGSATLPFYA 147

                        170       180
                 ....*....|....*....|....
gi 489935578 158 YLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:COG3539  148 RYVATGATVTAGSFNATATFTIDY 171
PRK15210 PRK15210
fimbrial protein;
30-182 2.45e-16

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 73.19  E-value: 2.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  30 GKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSL--GDSQHPGSL--FQRANITFSGA 105
Cdd:PRK15210  35 GKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCAFdpNIPDTAGSAgkMSKVTVSFSGT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578 106 PDSDNPDYLSVQSeTENLAIEIYDGKGQQ-IHLGEPSPD---YALNPGKNTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15210 115 ANTSKKAYTTSGS-AQHVGVQLLKSDNTSiIEPNTPMPDgdaQQLQAGNNELNFFARLIALDNGVTPGDFNASVTYTLKY 193


                 .
gi 489935578 182 L 182
Cdd:PRK15210 194 L 194
PRK09934 PRK09934
fimbriae assembly protein;
32-181 3.33e-13

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 64.14  E-value: 3.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  32 MRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSlgdsqhPGSlfqrANITFSGAPDSDnP 111
Cdd:PRK09934  29 IELHGNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEGCP------PGS----ASITFTGTPASD-T 97

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489935578 112 DYLSVQ--SETENLAIEIYDGKGQQIHLGEPSPDYAL-NPGKNTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK09934  98 NLLALDdpAMAQTVAIEIRDSDRSRLALGQASPTVEVdANGNATLNFYANYIALADGVQPGVAKADATFMINY 170
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 27-181 8.28e-13

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 63.07  E-value: 8.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  27 STPGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSLgdsqhpgSLFQRANITFSGAP 106
Cdd:PRK15209  23 SGDGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDI-------TTNKKVNVSFNGVG 95

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489935578 107 DSDNPDYLSVQSE---TENLAIEIYDGKGQQIHLGEPSPDYALNPGKNTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15209  96 DADDSTLVSVSTEagaATGVGIGIYDNANTLVELNTGKSTTTLAAGQTVLYFTANYVSTKDTVTTGYGNAEVDFNLSY 173
Fimbrial pfam00419
Fimbrial protein;
34-181 1.07e-12

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 62.45  E-value: 1.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578   34 MRGNI--IEAACYVDPRDrSLLVEFDDLSARDISGKPEKVSAHDFSIHlLGCSLGDSQhpgslfQRANITFSGAPDSDNP 111
Cdd:pfam00419   3 FTGTVtrVPATCKITAGT-PIEVDFGQIPVNELNAGGEGSRQKPFSIT-LECSSGSSA------VKVTVGLFGTADASSP 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489935578  112 DYLSVQSE---TENLAIEIYDGKGQQIHLGEPSPDYALNPG---KNTLNFTAYLISRDG-RMTSGEFTAVTHFVVNY 181
Cdd:pfam00419  75 NLLLTGNGagaATGVGIRLYDANGGALPPNNGTSSIPVSATaavATGITFTASLVATTGgTPTAGDFNATATIVVDY 151
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 20-181 5.76e-11

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 58.29  E-value: 5.76e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  20 ADTHRLvsTPGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVS-AHDFSIHLLGCslgDSQhpgsLFQRA 98
Cdd:PRK15187  24 ADTTTV--TGGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGMVANqKEDFTIKLEDC---DTQ----TSQNA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  99 NITFSGAPDSDNPDYLSVQS---ETENLAIEIYDGKGQQIHLGEPSPDYALNPGKNTLNFTAYLISrDGRMTSGEFTAVT 175
Cdd:PRK15187  95 AVIFNGQQDANQPGSLANTAgagSATNVALQLYGPDGQALNIGESSSTVTLNDGENVIPLSVDYIA-TGTATAGNVTATA 173


                 ....*.
gi 489935578 176 HFVVNY 181
Cdd:PRK15187 174 TFSMVY 179
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 30-181 5.12e-10

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 55.49  E-value: 5.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  30 GKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCslgdsqhpGSLFQRANITFSGAPDSD 109
Cdd:PRK15191  23 GRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNC--------GSTASGVTVSFSGAADSR 94

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489935578 110 NPDYLSV---QSETENLAIEIYDGKGQQIHLGEPSPDYALNPGKNT--LNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15191  95 NTDLLALtagESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASahLQFYARYLADGGAVTPGDANASATFILAY 171
PRK09733 PRK09733
fimbrial-like protein;
30-181 1.46e-09

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 54.57  E-value: 1.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  30 GKMRMRGNIIEAACYVDPRDRSLLVEFDDLsARDISGKPEKVSAHDFSIHLLGCSLGDSqhpGSLFQRANITFSGAP-DS 108
Cdd:PRK09733  26 GIVKFKGEVISAPCSIKPGDEDLTVNLGEV-ADTVLKSDQKSLAEPFTIHLQDCMLSQG---GTTYSKAKVTFTTANtMT 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489935578 109 DNPDYLSVQSETE-----NLAIEIYDGKGQQIHLGEP-SPDYALNPGKNTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK09733 102 GQSDLLKNTKETEiggatGVGVRILDSQSGEVTLGTPvVITFNNTNSYQELNFKARMESPSKDATPGNVYAQADYKIAY 180
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 32-181 9.79e-08

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 49.70  E-value: 9.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  32 MRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSLGdsqhpgslFQRANITFSGAPDSDNP 111
Cdd:PRK15190  30 LEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRG--------IAGAKIWFTGEPDPDNP 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489935578 112 DYLSVQSE--------TENLAIEIYDGKGQQIHLGEP-SPDYALNPGKNTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15190 102 ALLAITDTgmgsgnmlASGVGVEILNDDQDTISINNAdSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNATAVMYFDMQY 180
lpfA PRK15289
fimbrial protein; Provisional
 13-181 1.28e-07

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 49.19  E-value: 1.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  13 ISPAWVLADTH---RLVSTPGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCslgdsq 89
Cdd:PRK15289   6 IGGAFTLASLMlagHALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENC------ 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  90 hPGSlFQRANITFSG--AP------------DSDNP-DYL--SVQSETENLAIEIYD-GKGQQIHLGEPSPDYALNP-GK 150
Cdd:PRK15289  80 -PAT-YTQAAVRFDGteAPggdgdlkvgtplTAGNPgDFTgtGQAIAATGVGIRIFNqSDNSQVKLYNDSAYTAIDAeGK 157

                        170       180       190
                 ....*....|....*....|....*....|.
gi 489935578 151 NTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15289 158 AEMKFIARYVATNATVTAGTANADSQFTVEY 188
PRK15261 PRK15261
fimbrial protein SteA; Provisional
 27-182 1.84e-07

fimbrial protein SteA; Provisional


Pssm-ID: 185169  Cd Length: 195  Bit Score: 49.01  E-value: 1.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  27 STPGKMRMRGNIIEAACYV--DPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSLGDSQHPGSLFQRANITFSG 104
Cdd:PRK15261  28 SNTAKVTFLGNIVDSPCSVtlDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAA 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578 105 APDSDNPDYLSVQ--SETENLAIEIYDGKGQQIHLGEP--------SPDYALNPgKNTLNFTAYLI-SRDGRMTSGEFTA 173
Cdd:PRK15261 108 TGATDNLALMKTDgtGAISNVSLAIGDAGKNNIKLGDTytqaiadlDGDTILDE-KQSLNFTAWLVgAATGTVGTGEFSS 186


                 ....*....
gi 489935578 174 VTHFVVNYL 182
Cdd:PRK15261 187 AANVTISYL 195
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
11-181 3.21e-07

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 48.03  E-value: 3.21e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  11 IFISPAWVLADTHRLVSTPGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSlgdsqh 90
Cdd:PRK15194  14 LFVAGAAYAADPTPVSVDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFTIQLNDCD------ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  91 PgSLFQRANITFSGAPDSDNPDYLSVQSETEN-----LAIEIYDGKGQQIhlgepSPD-------YALNPGKNTLNFTAY 158
Cdd:PRK15194  88 P-VVAATAAVAFSGQADATNDNLLAVASSTNTttatgVGIEILDNTSSIL-----KPDgatfsanQNLIEGTNTLHFSAR 161

                        170       180
                 ....*....|....*....|...
gi 489935578 159 LISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15194 162 YKATGTSASAGQANADATFIMKY 184
PRK15296 PRK15296
fimbrial protein SthA;
18-181 3.76e-06

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 45.08  E-value: 3.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  18 VLADTHRLVSTP----GKMRMRGNIIEAACYVDPR-DRSLLVEFDDLSARDISGKPEKVSAHDFSIHLLGCSLGDSQHPG 92
Cdd:PRK15296   8 ILAMLTAVASTPvfaqNTITFNGKIYDQACTVQVNgSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPEAGTGVPT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  93 slfqRANITFSGAPDSDNPDYL-SVQSETE----NLAIEIYDGKGQQIHLGEPSPDYAL--NPGKNTLNFTAYLISR-DG 164
Cdd:PRK15296  88 ----QAMFRFHGATDDSNPTYFkNADEGSEtgaaGVGISIQNASHSDVTDNTDDAAVNLptDGSTADFTYYAAMANDgSA 163

                        170
                 ....*....|....*..
gi 489935578 165 RMTSGEFTAVTHFVVNY 181
Cdd:PRK15296 164 TVTGGDVSTQVTYTVSY 180
PRK15205 PRK15205
long polar fimbrial protein LpfE; Provisional
 67-181 1.06e-05

long polar fimbrial protein LpfE; Provisional


Pssm-ID: 237923  Cd Length: 176  Bit Score: 43.69  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  67 KPEKV----SAHDFSIHLLGCSLgdsqhpgslFQRANITFSGAPDSDNPDYLSVQS-ETENLAIEIYDGKG-QQIHLG-E 139
Cdd:PRK15205  61 KPVKVgtelNQKNFSIGLKDCDG---------ISKASVTMDGSPDPDDPSLFALDAgGATGVALKIKTSKGtQQYPKStD 131

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 489935578 140 PSP-DYALN-PGKNTLNFTAYLISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15205 132 GTPvEWAINgDGTTQLNYIASYVPVNADATVGTANATVNFSVTY 175
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
7-181 1.21e-04

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 40.61  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578   7 LLLFIFISPAWvladTHRLVSTPGKMRMRGNIIEAACYVDPRDRSLLVEFDDLSARDISG----KPEKVSahdFSIHLLG 82
Cdd:PRK15200   8 LVGLVLMSPVI----AQPVMVESGRVHLRGQLVNGGCAVATESQDLRVLMGQYRTNAFTGpgsfAPVSVP---FSLRLIS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  83 CSLGDSQHPGslfqranITFSGAPDSDNPDYLSVQSET---ENLAIEIYDGKGQQIHLGEPSPDYA-LNPGKNTLNFTAY 158
Cdd:PRK15200  81 CSAEVWRHVG-------IAFAGVTPAEDPHVFLASGEGignAGIGLALFDDQQRQIIPNTLPLHYApILTSEMTLHFTAR 153

                        170       180
                 ....*....|....*....|...
gi 489935578 159 LISRDGRMTSGEFTAVTHFVVNY 181
Cdd:PRK15200 154 YRAISENMTPGRIHSEVWFTLVY 176
PRK15297 PRK15297
fimbrial protein;
84-173 1.40e-03

fimbrial protein;


Pssm-ID: 185197 [Multi-domain]  Cd Length: 359  Bit Score: 38.56  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489935578  84 SLGDSQHPGSLFQRANITFS-------------GAPDSDNPDYLsvQSETENLAIEIYDGKGQQIHLGE----PSPDYal 146
Cdd:PRK15297 247 HLGDSPQNSHVTTQVNFTCSnvadgtnlsmslnGATDPHNPDYL--KTDNENLGIRISDKYDNTIVPGGsaelPIEDY-- 322

                         90       100
                 ....*....|....*....|....*...
gi 489935578 147 NPGKNTLNFTAYLISRDGRMT-SGEFTA 173
Cdd:PRK15297 323 TDGKGSTEFTAAPVNTTGHVPhTGEYQA 350
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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