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Conserved domains on  [gi|489910652|ref|WP_003814065|]
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MULTISPECIES: cytochrome c [Bordetella]

Protein Classification

c-type cytochrome( domain architecture ID 10006741)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Helicobacter pylori cytochrome c-553 that binds 1 heme and functions as the natural electron acceptor for a formate dehydrogenase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
35-117 1.28e-27

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 97.11  E-value: 1.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910652  35 GNAQNARDKVSMCIGCHGIPGYKASFPelyHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYS 114
Cdd:COG2863   13 GDAARGKAYAAACAACHGADGEGNPGG---GAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKALAAYIA 89


                 ...
gi 489910652 115 SLK 117
Cdd:COG2863   90 SLK 92
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
35-117 1.28e-27

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 97.11  E-value: 1.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910652  35 GNAQNARDKVSMCIGCHGIPGYKASFPelyHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYS 114
Cdd:COG2863   13 GDAARGKAYAAACAACHGADGEGNPGG---GAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKALAAYIA 89


                 ...
gi 489910652 115 SLK 117
Cdd:COG2863   90 SLK 92
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 47-117 6.39e-05

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 38.67  E-value: 6.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910652   47 CIGCHGIPGYKASfpelYHVPMIAGQNAKYIEAALNEYRKGARSH------------PTMDAVAGSLSDQDIADLAAYYS 114
Cdd:pfam00034  11 CAACHGVNGEGAG----AGGPDLAGLAARYPGDALGAIRENKHAIggggvdraggppGTGMPAFDGLTDEEIADLVAYLL 86


                  ...
gi 489910652  115 SLK 117
Cdd:pfam00034  87 SLS 89
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
35-117 1.28e-27

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 97.11  E-value: 1.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910652  35 GNAQNARDKVSMCIGCHGIPGYKASFPelyHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYS 114
Cdd:COG2863   13 GDAARGKAYAAACAACHGADGEGNPGG---GAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKALAAYIA 89


                 ...
gi 489910652 115 SLK 117
Cdd:COG2863   90 SLK 92
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
47-112 1.47e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 41.86  E-value: 1.47e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489910652  47 CIGCHGI--PGYKASFPELyHVPMIAGQNAKYIEAALneyRKGaRSHPTMDAVAGSLSDQDIADLAAY 112
Cdd:COG2010  100 CAACHGAdgKGGLGAAPNL-TDDALYGGDPEALVETI---LNG-RPGGAMPAFGGQLSDEEIAALAAY 162
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 47-117 6.39e-05

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 38.67  E-value: 6.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910652   47 CIGCHGIPGYKASfpelYHVPMIAGQNAKYIEAALNEYRKGARSH------------PTMDAVAGSLSDQDIADLAAYYS 114
Cdd:pfam00034  11 CAACHGVNGEGAG----AGGPDLAGLAARYPGDALGAIRENKHAIggggvdraggppGTGMPAFDGLTDEEIADLVAYLL 86


                  ...
gi 489910652  115 SLK 117
Cdd:pfam00034  87 SLS 89
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 47-116 5.29e-04

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 37.53  E-value: 5.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910652  47 CIGCHGIPGY-KASFPELYHVPMIAGQNAkyieaalneYRKGARSHPTMDAV------------AGSLSDQDIADLAAYY 113
Cdd:COG3258  128 CASCHGADGEgQGRADGQYGFPPLWGGDS---------YNDGAGMARLGTLAdfikgrnmplgkPGSLSDDEAWDVAAYV 198


                 ...
gi 489910652 114 SSL 116
Cdd:COG3258  199 RSL 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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