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Conserved domains on  [gi|489910535|ref|WP_003813948|]
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MULTISPECIES: 5-(carboxyamino)imidazole ribonucleotide mutase [Bifidobacterium]

Protein Classification

5-(carboxyamino)imidazole ribonucleotide mutase( domain architecture ID 10000490)

5-(carboxyamino)imidazole ribonucleotide mutase catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR), a step in de novo purine nucleotide biosynthesis

CATH:  3.40.50.7700
EC:  5.4.99.18
PubMed:  36748301|33179964
SCOP:  4003688

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
6-164 7.67e-101

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


:

Pssm-ID: 439811  Cd Length: 161  Bit Score: 286.57  E-value: 7.67e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535   6 PEVAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLP 85
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPDRLFEYAKTAEERGLKVIIAGAGGAAHLPGMVAAKTTLP 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489910535  86 VIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGnsGATNAGLLAVQILSTTDKRLADALQEYRDALKEKVAESNAQL 164
Cdd:COG0041   81 VIGVPVKSKALDGLDSLLSIVQMPPGVPVATVAIG--GAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLAKDEEL 157
 
Name Accession Description Interval E-value
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
6-164 7.67e-101

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439811  Cd Length: 161  Bit Score: 286.57  E-value: 7.67e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535   6 PEVAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLP 85
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPDRLFEYAKTAEERGLKVIIAGAGGAAHLPGMVAAKTTLP 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489910535  86 VIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGnsGATNAGLLAVQILSTTDKRLADALQEYRDALKEKVAESNAQL 164
Cdd:COG0041   81 VIGVPVKSKALDGLDSLLSIVQMPPGVPVATVAIG--GAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLAKDEEL 157
AIRC pfam00731
AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl) ...
8-156 5.17e-87

AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 459917  Cd Length: 147  Bit Score: 251.13  E-value: 5.17e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535    8 VAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLPVI 87
Cdd:pfam00731   1 VGIIMGSDSDLPVMKKAAKILKEFGIPYEVRVVSAHRTPERLLEYAKEAEERGLKVIIAGAGGAAHLPGMVAALTTLPVI 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489910535   88 GVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGnsGATNAGLLAVQILSTTDKRLADALQEYRDALKEK 156
Cdd:pfam00731  81 GVPVKSSALDGLDSLLSIVQMPSGVPVATVAIG--GAKNAALLAAQILALSDPELAEKLKEYREEMAEK 147
purE TIGR01162
phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole ...
8-164 2.91e-81

phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273474  Cd Length: 156  Bit Score: 237.13  E-value: 2.91e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535    8 VAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLPVI 87
Cdd:TIGR01162   1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKTAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489910535   88 GVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGNsgATNAGLLAVQILSTTDKRLADALQEYRDALKEKVAESNAQL 164
Cdd:TIGR01162  81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGN--AGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKL 155
AIRC smart01001
AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl) ...
6-157 2.67e-80

AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 214965  Cd Length: 152  Bit Score: 234.35  E-value: 2.67e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535     6 PEVAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLP 85
Cdd:smart01001   1 PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAEDRGIKVIIAGAGGAAHLPGVVAALTTLP 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489910535    86 VIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGNSGATNAGLLAVQILSTTDKRLADALQEYRDALKEKV 157
Cdd:smart01001  81 VIGVPVSSGYLGGLDSLLSIVQMPSGIPVATVAIGIDGAFNAALLAAQILALNDPELAAKLAAYRINQTEEV 152
PLN02948 PLN02948
phosphoribosylaminoimidazole carboxylase
2-164 2.77e-71

phosphoribosylaminoimidazole carboxylase


Pssm-ID: 178534 [Multi-domain]  Cd Length: 577  Bit Score: 224.55  E-value: 2.77e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535   2 TDSKPEVAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQ 81
Cdd:PLN02948 407 PKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASM 486
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535  82 TTLPVIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGNsgATNAGLLAVQILSTTDKRLADALQEYRDALKEKVAESN 161
Cdd:PLN02948 487 TPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGN--ATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDMVLEKA 564

                 ...
gi 489910535 162 AQL 164
Cdd:PLN02948 565 EKL 567
 
Name Accession Description Interval E-value
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
6-164 7.67e-101

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439811  Cd Length: 161  Bit Score: 286.57  E-value: 7.67e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535   6 PEVAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLP 85
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPDRLFEYAKTAEERGLKVIIAGAGGAAHLPGMVAAKTTLP 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489910535  86 VIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGnsGATNAGLLAVQILSTTDKRLADALQEYRDALKEKVAESNAQL 164
Cdd:COG0041   81 VIGVPVKSKALDGLDSLLSIVQMPPGVPVATVAIG--GAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLAKDEEL 157
AIRC pfam00731
AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl) ...
8-156 5.17e-87

AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 459917  Cd Length: 147  Bit Score: 251.13  E-value: 5.17e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535    8 VAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLPVI 87
Cdd:pfam00731   1 VGIIMGSDSDLPVMKKAAKILKEFGIPYEVRVVSAHRTPERLLEYAKEAEERGLKVIIAGAGGAAHLPGMVAALTTLPVI 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489910535   88 GVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGnsGATNAGLLAVQILSTTDKRLADALQEYRDALKEK 156
Cdd:pfam00731  81 GVPVKSSALDGLDSLLSIVQMPSGVPVATVAIG--GAKNAALLAAQILALSDPELAEKLKEYREEMAEK 147
purE TIGR01162
phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole ...
8-164 2.91e-81

phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273474  Cd Length: 156  Bit Score: 237.13  E-value: 2.91e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535    8 VAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLPVI 87
Cdd:TIGR01162   1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKTAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489910535   88 GVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGNsgATNAGLLAVQILSTTDKRLADALQEYRDALKEKVAESNAQL 164
Cdd:TIGR01162  81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGN--AGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKL 155
AIRC smart01001
AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl) ...
6-157 2.67e-80

AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 214965  Cd Length: 152  Bit Score: 234.35  E-value: 2.67e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535     6 PEVAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQTTLP 85
Cdd:smart01001   1 PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAEDRGIKVIIAGAGGAAHLPGVVAALTTLP 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489910535    86 VIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGNSGATNAGLLAVQILSTTDKRLADALQEYRDALKEKV 157
Cdd:smart01001  81 VIGVPVSSGYLGGLDSLLSIVQMPSGIPVATVAIGIDGAFNAALLAAQILALNDPELAAKLAAYRINQTEEV 152
PLN02948 PLN02948
phosphoribosylaminoimidazole carboxylase
2-164 2.77e-71

phosphoribosylaminoimidazole carboxylase


Pssm-ID: 178534 [Multi-domain]  Cd Length: 577  Bit Score: 224.55  E-value: 2.77e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535   2 TDSKPEVAVIMGSASDWETMKHACDMLDQFEVPYVKQVISAHRTPELMAEFAHGARVNGLKVIIAGAGGAAHLPGMVAAQ 81
Cdd:PLN02948 407 PKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASM 486
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489910535  82 TTLPVIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAVGNsgATNAGLLAVQILSTTDKRLADALQEYRDALKEKVAESN 161
Cdd:PLN02948 487 TPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGN--ATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDMVLEKA 564

                 ...
gi 489910535 162 AQL 164
Cdd:PLN02948 565 EKL 567
PRK07534 PRK07534
betaine--homocysteine S-methyltransferase;
35-90 2.15e-03

betaine--homocysteine S-methyltransferase;


Pssm-ID: 236045 [Multi-domain]  Cd Length: 336  Bit Score: 37.42  E-value: 2.15e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489910535  35 YVKQVISAHRTPELMAEFAHGARVNGLKvIIAGAGGA--AHLPGMVAAQTTLPVIGVP 90
Cdd:PRK07534 246 YVDGHIHYDGTPELMAEYAVLARDAGAR-IIGGCCGTmpEHLAAMRAALDARPRGPRP 302
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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