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Conserved domains on  [gi|489821800|ref|WP_003725599|]
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MULTISPECIES: DUF5713 family protein [Listeria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5713 super family cl40976
Family of unknown function (DUF5713); This is a family of unknown function, mainly found in ...
 1-104 1.45e-38

Family of unknown function (DUF5713); This is a family of unknown function, mainly found in bacteria.


The actual alignment was detected with superfamily member pfam18977:

Pssm-ID: 436881  Cd Length: 107  Bit Score: 124.57  E-value: 1.45e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821800    1 MTEIKYLEGMYQDPFFPPFLVDKIKQCIFDTVQFLEQGN-HDTEAIQAKFDEMTLAINALQDEFYENESELETGARDSIA 79
Cdd:pfam18977   2 VADYAFLKEMYEDGYFPDFLVDKGKAILLRLCERIEAERpADLAALYELTHAATEEFNDLQEEFEENGSEIETVARESIA 81

                          90       100
                  ....*....|....*....|....*.
gi 489821800   80 ETIIPILAHYKI-DIDIEELLREREW 104
Cdd:pfam18977  82 EDFEFIAKAYGFaDADVEELIATRDW 107
 
Name Accession Description Interval E-value
DUF5713 pfam18977
Family of unknown function (DUF5713); This is a family of unknown function, mainly found in ...
 1-104 1.45e-38

Family of unknown function (DUF5713); This is a family of unknown function, mainly found in bacteria.


Pssm-ID: 436881  Cd Length: 107  Bit Score: 124.57  E-value: 1.45e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821800    1 MTEIKYLEGMYQDPFFPPFLVDKIKQCIFDTVQFLEQGN-HDTEAIQAKFDEMTLAINALQDEFYENESELETGARDSIA 79
Cdd:pfam18977   2 VADYAFLKEMYEDGYFPDFLVDKGKAILLRLCERIEAERpADLAALYELTHAATEEFNDLQEEFEENGSEIETVARESIA 81

                          90       100
                  ....*....|....*....|....*.
gi 489821800   80 ETIIPILAHYKI-DIDIEELLREREW 104
Cdd:pfam18977  82 EDFEFIAKAYGFaDADVEELIATRDW 107
 
Name Accession Description Interval E-value
DUF5713 pfam18977
Family of unknown function (DUF5713); This is a family of unknown function, mainly found in ...
 1-104 1.45e-38

Family of unknown function (DUF5713); This is a family of unknown function, mainly found in bacteria.


Pssm-ID: 436881  Cd Length: 107  Bit Score: 124.57  E-value: 1.45e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821800    1 MTEIKYLEGMYQDPFFPPFLVDKIKQCIFDTVQFLEQGN-HDTEAIQAKFDEMTLAINALQDEFYENESELETGARDSIA 79
Cdd:pfam18977   2 VADYAFLKEMYEDGYFPDFLVDKGKAILLRLCERIEAERpADLAALYELTHAATEEFNDLQEEFEENGSEIETVARESIA 81

                          90       100
                  ....*....|....*....|....*.
gi 489821800   80 ETIIPILAHYKI-DIDIEELLREREW 104
Cdd:pfam18977  82 EDFEFIAKAYGFaDADVEELIATRDW 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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