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Conserved domains on  [gi|489821792|ref|WP_003725591|]
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MULTISPECIES: NifU family protein [Listeria]

Protein Classification

NifU family protein( domain architecture ID 10471400)

NifU family protein proposed to provide a molecular scaffold for the assembly of [Fe-S] clusters

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
 9-75 3.78e-23

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


:

Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 83.26  E-value: 3.78e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489821792   9 VDKAL-KKFRPFLVRDGGDYELIEVTqDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVV 75
Cdd:pfam01106  1 IEEVLeEEIRPALQADGGDIELVDVD-DGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKVPEVKRVE 67
 
Name Accession Description Interval E-value
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
 9-75 3.78e-23

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 83.26  E-value: 3.78e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489821792   9 VDKAL-KKFRPFLVRDGGDYELIEVTqDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVV 75
Cdd:pfam01106  1 IEEVLeEEIRPALQADGGDIELVDVD-DGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKVPEVKRVE 67
NifU COG0694
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, ...
 6-76 2.06e-20

Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440458 [Multi-domain]  Cd Length: 176  Bit Score: 79.31  E-value: 2.06e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489821792   6 YAEVDKAL-KKFRPFLVRDGGDYELIEVtQDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVVQ 76
Cdd:COG0694  106 EERIEEVLdEEIRPALASDGGDIELVDV-EDGVVYVRLGGACSGCPSSTMTLKNGIERALKERVPEVKEVEA 176
PRK11190 PRK11190
iron-sulfur cluster biogenesis protein NfuA;
18-70 1.05e-06

iron-sulfur cluster biogenesis protein NfuA;


Pssm-ID: 183027 [Multi-domain]  Cd Length: 192  Bit Score: 43.47  E-value: 1.05e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489821792  18 PFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIG 70
Cdd:PRK11190 121 PQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPG 173
 
Name Accession Description Interval E-value
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
 9-75 3.78e-23

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 83.26  E-value: 3.78e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489821792   9 VDKAL-KKFRPFLVRDGGDYELIEVTqDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVV 75
Cdd:pfam01106  1 IEEVLeEEIRPALQADGGDIELVDVD-DGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKVPEVKRVE 67
NifU COG0694
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, ...
 6-76 2.06e-20

Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440458 [Multi-domain]  Cd Length: 176  Bit Score: 79.31  E-value: 2.06e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489821792   6 YAEVDKAL-KKFRPFLVRDGGDYELIEVtQDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVVQ 76
Cdd:COG0694  106 EERIEEVLdEEIRPALASDGGDIELVDV-EDGVVYVRLGGACSGCPSSTMTLKNGIERALKERVPEVKEVEA 176
PRK11190 PRK11190
iron-sulfur cluster biogenesis protein NfuA;
18-70 1.05e-06

iron-sulfur cluster biogenesis protein NfuA;


Pssm-ID: 183027 [Multi-domain]  Cd Length: 192  Bit Score: 43.47  E-value: 1.05e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489821792  18 PFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIG 70
Cdd:PRK11190 121 PQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPG 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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