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Conserved domains on  [gi|489810750|ref|WP_003714605|]
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cation diffusion facilitator family transporter [Limosilactobacillus oris]

Protein Classification

cation diffusion facilitator family transporter( domain architecture ID 11440813)

cation diffusion facilitator (CDF) family transporter facilitates the active efflux of one or more from a variety of metal cations including Zn, Cd, Ni, Co, Mn, and Cu

Gene Ontology:  GO:0008324|GO:0046872
TCDB:  2.A.4

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CzcD COG1230
Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];
9-285 1.68e-105

Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440843 [Multi-domain]  Cd Length: 294  Bit Score: 309.36  E-value: 1.68e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   9 RFLAVTLLNVLITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLL 88
Cdd:COG1230   19 RLLIALALTLGFMVVEIVGGLLSGSLALLADAGHMLSDALALGLALFAYRLARRPADARFTFGYKRAEILAALANALLLL 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  89 VIAIFLIGEAIQRLGHPEHINGRLMLIVAVIGLLANFASAALLHSGSHDSLNVKATYLHVLSDALSSVAVIIGGIILSFV 168
Cdd:COG1230   99 VVAGYILYEAIQRLFNPPPVAGGGMLVVAVIGLVVNLVSAWLLHRGSKHDLNLRGAYLHVLADALGSVAVIVAALVILFT 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750 169 NVPWLDPLLTIGVAVYIGFEALPIISQTIKILMQSSPD-LDYDKITTDLKAVAGVNDVHHVHAWMIDENHIIFSAHLNCD 247
Cdd:COG1230  179 GWTWLDPLLSLLIALLILRSAWGLLRESLRILLEGVPDgIDLEEVRAALEALPGVADVHDLHVWSLSSGENALTAHVVVD 258
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489810750 248 DlrLSEVEEIYSQVEKILREKYHICHITIQAECSRGRD 285
Cdd:COG1230  259 D--GADADAILDEIRELLAERFGIEHVTIQIETEACAD 294
 
Name Accession Description Interval E-value
CzcD COG1230
Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];
9-285 1.68e-105

Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];


Pssm-ID: 440843 [Multi-domain]  Cd Length: 294  Bit Score: 309.36  E-value: 1.68e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   9 RFLAVTLLNVLITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLL 88
Cdd:COG1230   19 RLLIALALTLGFMVVEIVGGLLSGSLALLADAGHMLSDALALGLALFAYRLARRPADARFTFGYKRAEILAALANALLLL 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  89 VIAIFLIGEAIQRLGHPEHINGRLMLIVAVIGLLANFASAALLHSGSHDSLNVKATYLHVLSDALSSVAVIIGGIILSFV 168
Cdd:COG1230   99 VVAGYILYEAIQRLFNPPPVAGGGMLVVAVIGLVVNLVSAWLLHRGSKHDLNLRGAYLHVLADALGSVAVIVAALVILFT 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750 169 NVPWLDPLLTIGVAVYIGFEALPIISQTIKILMQSSPD-LDYDKITTDLKAVAGVNDVHHVHAWMIDENHIIFSAHLNCD 247
Cdd:COG1230  179 GWTWLDPLLSLLIALLILRSAWGLLRESLRILLEGVPDgIDLEEVRAALEALPGVADVHDLHVWSLSSGENALTAHVVVD 258
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489810750 248 DlrLSEVEEIYSQVEKILREKYHICHITIQAECSRGRD 285
Cdd:COG1230  259 D--GADADAILDEIRELLAERFGIEHVTIQIETEACAD 294
CDF TIGR01297
cation diffusion facilitator family transporter; This model describes a broadly distributed ...
19-279 1.80e-60

cation diffusion facilitator family transporter; This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273544 [Multi-domain]  Cd Length: 268  Bit Score: 193.59  E-value: 1.80e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   19 LITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLLVIAIFLIGEA 98
Cdd:TIGR01297   1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   99 IQRLGHPEH-INGRLMLIVAVIGLLANFASAALLHSGSH--DSLNVKATYLHVLSDALSSVAVIIGGiILSFVNVPWLDP 175
Cdd:TIGR01297  81 IERLINPEPeIDGGTMLIVAIVGLIVNLILALYLHRVGHrlGSLALRAAALHVLSDALSSVGVLIGA-LLIYFGWHWADP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  176 LLTIGVAVYIGFEALPIISQTIKILMQSSPD-LDYDKITTDLKAVAGVNDVHHVHAWMIDENHIIFSAHL-NCDDLRLSE 253
Cdd:TIGR01297 160 IAALLISLLILYTAFRLLKESINVLLDAAPDeEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVvVDPDLDLKQ 239
                         250       260
                  ....*....|....*....|....*..
gi 489810750  254 VEEIYSQVEK-ILREKYHICHITIQAE 279
Cdd:TIGR01297 240 AHDIALEIEReILKRHPGIEHVTIQVE 266
PRK03557 PRK03557
CDF family zinc transporter ZitB;
8-297 8.68e-43

CDF family zinc transporter ZitB;


Pssm-ID: 235130 [Multi-domain]  Cd Length: 312  Bit Score: 149.13  E-value: 8.68e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   8 QRFLAVTLLNVLITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLL 87
Cdd:PRK03557  19 RRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIAL 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  88 LVIAIFLIGEAIQRLGHPEHINGRLMLIVAVIGLLANFASAALLHSGSHD-SLNVKATYLHVLSDALSSVAVIIGGIILS 166
Cdd:PRK03557  99 VVITILIVWEAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLLHHGSEEkNLNVRAAALHVLGDLLGSVGAIIAALIII 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750 167 FVNVPWLDPLLTIGVAVYIGFEALPIISQTIKILMQSSPD-LDYDKITTDLKA-VAGVNDVHHVHAWMIDENHIIfsaHL 244
Cdd:PRK03557 179 WTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVsLDIAELKRRLCReIPEVRNVHHVHVWMVGEKPVM---TL 255
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489810750 245 NCDDLRLSEVEEIYSQVEKILREKYHICHITIQAECSR-GRDENLFNTPVDEQH 297
Cdd:PRK03557 256 HVQVIPPHDHDALLDRIQDYLMHHYQIEHATIQMEYQPcHGPDCHLNQGVSGHS 309
Cation_efflux pfam01545
Cation efflux family; Members of this family are integral membrane proteins, that are found to ...
19-201 1.01e-32

Cation efflux family; Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.


Pssm-ID: 426316 [Multi-domain]  Cd Length: 189  Bit Score: 119.30  E-value: 1.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   19 LITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLLVIAIFLIGEA 98
Cdd:pfam01545   1 LLALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPPDERFPFGHGRLEPLAALVVGILLLGGGVFLLYES 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   99 IQRLGHPEH-INGRLMLIVAVIGLLANFASAALLHSGSHD--SLNVKATYLHVLSDALSSVAVIIGGIILSFVNVP---W 172
Cdd:pfam01545  81 IQRLLSPGEeIDPGLALILALVSLLVNLFLLLYLRRAARRirSPALKADALHALSDVLASLGVLISALLIYLGPITgglL 160
                         170       180
                  ....*....|....*....|....*....
gi 489810750  173 LDPLLTIGVAVYIGFEALPIISQTIKILM 201
Cdd:pfam01545 161 ADPLASLLIGLLILYTALRLLKESLSILL 189
 
Name Accession Description Interval E-value
CzcD COG1230
Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];
9-285 1.68e-105

Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];


Pssm-ID: 440843 [Multi-domain]  Cd Length: 294  Bit Score: 309.36  E-value: 1.68e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   9 RFLAVTLLNVLITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLL 88
Cdd:COG1230   19 RLLIALALTLGFMVVEIVGGLLSGSLALLADAGHMLSDALALGLALFAYRLARRPADARFTFGYKRAEILAALANALLLL 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  89 VIAIFLIGEAIQRLGHPEHINGRLMLIVAVIGLLANFASAALLHSGSHDSLNVKATYLHVLSDALSSVAVIIGGIILSFV 168
Cdd:COG1230   99 VVAGYILYEAIQRLFNPPPVAGGGMLVVAVIGLVVNLVSAWLLHRGSKHDLNLRGAYLHVLADALGSVAVIVAALVILFT 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750 169 NVPWLDPLLTIGVAVYIGFEALPIISQTIKILMQSSPD-LDYDKITTDLKAVAGVNDVHHVHAWMIDENHIIFSAHLNCD 247
Cdd:COG1230  179 GWTWLDPLLSLLIALLILRSAWGLLRESLRILLEGVPDgIDLEEVRAALEALPGVADVHDLHVWSLSSGENALTAHVVVD 258
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489810750 248 DlrLSEVEEIYSQVEKILREKYHICHITIQAECSRGRD 285
Cdd:COG1230  259 D--GADADAILDEIRELLAERFGIEHVTIQIETEACAD 294
CDF TIGR01297
cation diffusion facilitator family transporter; This model describes a broadly distributed ...
19-279 1.80e-60

cation diffusion facilitator family transporter; This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273544 [Multi-domain]  Cd Length: 268  Bit Score: 193.59  E-value: 1.80e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   19 LITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLLVIAIFLIGEA 98
Cdd:TIGR01297   1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   99 IQRLGHPEH-INGRLMLIVAVIGLLANFASAALLHSGSH--DSLNVKATYLHVLSDALSSVAVIIGGiILSFVNVPWLDP 175
Cdd:TIGR01297  81 IERLINPEPeIDGGTMLIVAIVGLIVNLILALYLHRVGHrlGSLALRAAALHVLSDALSSVGVLIGA-LLIYFGWHWADP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  176 LLTIGVAVYIGFEALPIISQTIKILMQSSPD-LDYDKITTDLKAVAGVNDVHHVHAWMIDENHIIFSAHL-NCDDLRLSE 253
Cdd:TIGR01297 160 IAALLISLLILYTAFRLLKESINVLLDAAPDeEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVvVDPDLDLKQ 239
                         250       260
                  ....*....|....*....|....*..
gi 489810750  254 VEEIYSQVEK-ILREKYHICHITIQAE 279
Cdd:TIGR01297 240 AHDIALEIEReILKRHPGIEHVTIQVE 266
PRK03557 PRK03557
CDF family zinc transporter ZitB;
8-297 8.68e-43

CDF family zinc transporter ZitB;


Pssm-ID: 235130 [Multi-domain]  Cd Length: 312  Bit Score: 149.13  E-value: 8.68e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   8 QRFLAVTLLNVLITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLL 87
Cdd:PRK03557  19 RRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIAL 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  88 LVIAIFLIGEAIQRLGHPEHINGRLMLIVAVIGLLANFASAALLHSGSHD-SLNVKATYLHVLSDALSSVAVIIGGIILS 166
Cdd:PRK03557  99 VVITILIVWEAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLLHHGSEEkNLNVRAAALHVLGDLLGSVGAIIAALIII 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750 167 FVNVPWLDPLLTIGVAVYIGFEALPIISQTIKILMQSSPD-LDYDKITTDLKA-VAGVNDVHHVHAWMIDENHIIfsaHL 244
Cdd:PRK03557 179 WTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVsLDIAELKRRLCReIPEVRNVHHVHVWMVGEKPVM---TL 255
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489810750 245 NCDDLRLSEVEEIYSQVEKILREKYHICHITIQAECSR-GRDENLFNTPVDEQH 297
Cdd:PRK03557 256 HVQVIPPHDHDALLDRIQDYLMHHYQIEHATIQMEYQPcHGPDCHLNQGVSGHS 309
FieF COG0053
Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];
11-279 3.23e-42

Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];


Pssm-ID: 439823 [Multi-domain]  Cd Length: 284  Bit Score: 146.79  E-value: 3.23e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  11 LAVTLLNVLITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLLVI 90
Cdd:COG0053    6 LASLAANLLLAVLKLVAGLLTGSVALLADALHSLSDLVASLLVLLGLRLAAKPADEEHPYGHGKAEYLASLIVAVLILLA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  91 AIFLIGEAIQRLGHPEHI-NGRLMLIVAVIGLLANFASAALLHSGS--HDSLNVKATYLHVLSDALSSVAVIIGGIILSF 167
Cdd:COG0053   86 GLFILYEAIERLLHPEPVePSGLGLAVLLISIVVNEALARYLRRVGkkTGSPALKADALHDRSDALTSLGVLIGLLLALL 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750 168 VNVPWLDPLLTIGVAVYIGFEALPIISQTIKILM-QSSPDLDYDKITTDLKAVAGVNDVHHVHAWMIdENHIIFSAHLN- 245
Cdd:COG0053  166 TGWPWLDPIAAILIGLLILKVAYKLARESLSLLMdEALDEELVERIRAIILSVPGVIGVHDLRTRKS-GPRIFVDLHIEv 244
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 489810750 246 CDDLRLSEVEEIYSQVEKILREKY-HICHITIQAE 279
Cdd:COG0053  245 DPDLTVEEAHDIADRIEAALREEFpGVADVTIHVE 279
Cation_efflux pfam01545
Cation efflux family; Members of this family are integral membrane proteins, that are found to ...
19-201 1.01e-32

Cation efflux family; Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.


Pssm-ID: 426316 [Multi-domain]  Cd Length: 189  Bit Score: 119.30  E-value: 1.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   19 LITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLLLLVIAIFLIGEA 98
Cdd:pfam01545   1 LLALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPPDERFPFGHGRLEPLAALVVGILLLGGGVFLLYES 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   99 IQRLGHPEH-INGRLMLIVAVIGLLANFASAALLHSGSHD--SLNVKATYLHVLSDALSSVAVIIGGIILSFVNVP---W 172
Cdd:pfam01545  81 IQRLLSPGEeIDPGLALILALVSLLVNLFLLLYLRRAARRirSPALKADALHALSDVLASLGVLISALLIYLGPITgglL 160
                         170       180
                  ....*....|....*....|....*....
gi 489810750  173 LDPLLTIGVAVYIGFEALPIISQTIKILM 201
Cdd:pfam01545 161 ADPLASLLIGLLILYTALRLLKESLSILL 189
fieF PRK09509
CDF family cation-efflux pump FieF;
69-269 5.57e-14

CDF family cation-efflux pump FieF;


Pssm-ID: 181919 [Multi-domain]  Cd Length: 299  Bit Score: 70.86  E-value: 5.57e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  69 TYGYRRAEILSALTNSLLLLVIAIFLIGEAIQRLGHPEHINGRLM-LIVAVIGL-----LANFASAALLHSGSHdslNVK 142
Cdd:PRK09509  72 TFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMNDPGVgIIVTLVALictliLVTFQRWVVRKTQSQ---AVR 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750 143 ATYLHVLSDALSSVAVIIgGIILSFVNVPWLDPLLTIGVAVYIGFEALPIISQTIKILMQSS-PDLDYDKITTDLKAVAG 221
Cdd:PRK09509 149 ADMLHYQSDVMMNGAILL-ALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRAlPDEERQEIIDIVTSWPG 227
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489810750 222 VNDVHHVHAWMIDENHIIfSAHLNCDD-LRLSEVEEIYSQVEKILREKY 269
Cdd:PRK09509 228 VSGAHDLRTRQSGPTRFI-QLHLEMEDnLPLVQAHMIADQVEQALLRRF 275
COG3965 COG3965
Predicted Co/Zn/Cd cation transporter, cation efflux family [Inorganic ion transport and ...
8-211 2.97e-09

Predicted Co/Zn/Cd cation transporter, cation efflux family [Inorganic ion transport and metabolism];


Pssm-ID: 443165 [Multi-domain]  Cd Length: 300  Bit Score: 57.15  E-value: 2.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750   8 QRFLAVTLL-NVLITVVEIIGGLLSGSLALLSDAFHNMGDSFSIILGYVAQQLGGKSENRRQTYGYRRAEILSALTNSLL 86
Cdd:COG3965    5 QRLLKLSIAgTLLFAVLGIVFGLLSGSQAILFDGVYSLIDAGMTLLSLLVARLIARPDSRRFQFGYWHLEPLVLAIKGLI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489810750  87 LLVIAIFLIGEAIQRLGH-PEHINGRLMLIVAVIGLLANFASAALLHsgsHDSLNVKATYLHV-----LSDALSSVAVII 160
Cdd:COG3965   85 LLLLCLYALVNAVGSLLDgGREIEFGLALVYALVATVGCFGIALYLR---RANRRLRSELVRLdakawLMDGLLSAALLV 161
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489810750 161 GGIILSFVN-------VPWLDPLLTIGVAVYIGFEALPIISQTIKILMQSSPDLDYDK 211
Cdd:COG3965  162 AFILAYLLQgtglawlAPYVDPAILALLSLVFLPVPLRIVRQALREVLLMAPPEELDA 219
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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