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Conserved domains on  [gi|489809679|ref|WP_003713538|]
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MULTISPECIES: 50S ribosomal protein L31 [Neisseria]

Protein Classification

50S ribosomal protein L31( domain architecture ID 10000810)

50S ribosomal protein L31 binds the 23S rRNA in a Zn(II)-dependent manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-71 1.17e-41

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440024  Cd Length: 72  Bit Score: 129.88  E-value: 1.17e-41
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489809679  1 MKQGIHPNYHEVNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFGNLFKR 71
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTLEYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKK 71
 
Name Accession Description Interval E-value
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-71 1.17e-41

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 129.88  E-value: 1.17e-41
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489809679  1 MKQGIHPNYHEVNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFGNLFKR 71
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTLEYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKK 71
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-66 1.62e-41

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 129.27  E-value: 1.62e-41
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489809679  1 MKQGIHPNYHEVNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFG 66
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDEINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFG 66
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-68 6.89e-40

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 125.09  E-value: 6.89e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489809679   1 MKQGIHPNYHEVNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFGNL 68
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKETLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFGGL 68
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-66 6.87e-38

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 120.21  E-value: 6.87e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489809679   1 MKQGIHPNYHEVNVTCSCGNKFVTKSAmEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFG 66
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRST-EYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
 
Name Accession Description Interval E-value
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-71 1.17e-41

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 129.88  E-value: 1.17e-41
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489809679  1 MKQGIHPNYHEVNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFGNLFKR 71
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTLEYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKK 71
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-66 1.62e-41

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 129.27  E-value: 1.62e-41
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489809679  1 MKQGIHPNYHEVNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFG 66
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDEINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFG 66
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-68 6.89e-40

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 125.09  E-value: 6.89e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489809679   1 MKQGIHPNYHEVNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFGNL 68
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKETLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFGGL 68
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-66 6.87e-38

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 120.21  E-value: 6.87e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489809679   1 MKQGIHPNYHEVNVTCSCGNKFVTKSAmEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFG 66
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRST-EYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
rpmE PRK00528
50S ribosomal protein L31; Reviewed
 1-68 1.06e-24

50S ribosomal protein L31; Reviewed


Pssm-ID: 179057  Cd Length: 71  Bit Score: 86.93  E-value: 1.06e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489809679  1 MKQGIHPNYHEVNVTCSCGNKFVTKSAM--EKENFNIEVCSLCHPFYT-GTQKIVDTTGRVDKFNNKFGNL 68
Cdd:PRK00528  1 MKKDIHPDYHPIKVVMTDGTEYETRSTWgkTGPELRLDIDSGNHPAWTgGTQKLLDTGGRVAKFNKKFGGL 71
rpmE2 PRK01678
type B 50S ribosomal protein L31;
1-71 2.45e-24

type B 50S ribosomal protein L31;


Pssm-ID: 234969  Cd Length: 87  Bit Score: 86.48  E-value: 2.45e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489809679  1 MKQGIHPNYHEVN-VTCSCGNKFVTKSAMEKEN------------FNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFGN 67
Cdd:PRK01678  1 MKKGIHPEYRPVVfHDTSTGFKFLTGSTITTDEtiewedgktyplVKVEISSASHPFYTGKQKFVDTEGRVEKFNKRFGR 80


                ....
gi 489809679 68 LFKR 71
Cdd:PRK01678 81 FASK 84
rpl31 CHL00136
ribosomal protein L31; Validated
 1-66 2.09e-15

ribosomal protein L31; Validated


Pssm-ID: 177058  Cd Length: 68  Bit Score: 63.52  E-value: 2.09e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489809679  1 MKQGIHPNYHEvNVTCSCGNKFVTKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDKFNNKFG 66
Cdd:CHL00136  2 PKKNIHPQWFP-ETKVYCDGQLVMTVGSTKPELNVDIWSGNHPFYTGSQKIIDTEGRVERFMKKYG 66
PRK01397 PRK01397
50S ribosomal protein L31; Provisional
 1-68 4.90e-03

50S ribosomal protein L31; Provisional


Pssm-ID: 179294  Cd Length: 78  Bit Score: 32.23  E-value: 4.90e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489809679  1 MKQGIHPNYHEVNVTCScGNKFVTKSAMEKENFNIEVCSLCHPFYTG-TQKIVDTTGR-VDKFNNKFGNL 68
Cdd:PRK01397  1 MKSGIHPEYKKFLIKVG-SDVFETMSTHPTGEILMDVDFRKHPAWNKdSGNVVNQSNKsVSDFNKRFSGL 69
PRK12722 PRK12722
flagellar transcriptional regulator FlhC;
15-43 7.16e-03

flagellar transcriptional regulator FlhC;


Pssm-ID: 237181  Cd Length: 187  Bit Score: 32.60  E-value: 7.16e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 489809679  15 TCS-CGNKFVTKSAMEKENFnieVCSLCHP 43
Cdd:PRK12722 136 SCNcCGGHFVTHAHDPVGSF---VCGLCQP 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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