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Conserved domains on  [gi|489741686|ref|WP_003645748|]
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MULTISPECIES: putative metal homeostasis protein [Lactiplantibacillus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RsaX20_sORF NF038026
putative metal homeostasis protein; Members of this family average just 38 amino acids in ...
3-34 1.94e-04

putative metal homeostasis protein; Members of this family average just 38 amino acids in length, but are widely conserved among species of the Gram-positive genera that include Staphylococcus, Enterococcus, Leuconostoc, and Lactobacillus. Expression of an RNA designated RsaX20, which encodes a member of this family, was studied in a Staphylococcus aureus of possible structural RNAs, and shown to be controlled by Fur-like transcription factor Zur. The broad conservation of the coding region across multiple species and protein-like pattern of amino acid substitutions in multiple sequence alignments strongly suggests that that members of this family are indeed translated into functional proteins.


:

Pssm-ID: 411619  Cd Length: 32  Bit Score: 33.43  E-value: 1.94e-04
                        10        20        30
                ....*....|....*....|....*....|..
gi 489741686  3 KQDLASARRRLRGTNLKSRKRALKILHDARRN 34
Cdd:NF038026  1 KTDLASAYRRLKSPNIKTRKRALKIIKEHKRN 32
 
Name Accession Description Interval E-value
RsaX20_sORF NF038026
putative metal homeostasis protein; Members of this family average just 38 amino acids in ...
3-34 1.94e-04

putative metal homeostasis protein; Members of this family average just 38 amino acids in length, but are widely conserved among species of the Gram-positive genera that include Staphylococcus, Enterococcus, Leuconostoc, and Lactobacillus. Expression of an RNA designated RsaX20, which encodes a member of this family, was studied in a Staphylococcus aureus of possible structural RNAs, and shown to be controlled by Fur-like transcription factor Zur. The broad conservation of the coding region across multiple species and protein-like pattern of amino acid substitutions in multiple sequence alignments strongly suggests that that members of this family are indeed translated into functional proteins.


Pssm-ID: 411619  Cd Length: 32  Bit Score: 33.43  E-value: 1.94e-04
                        10        20        30
                ....*....|....*....|....*....|..
gi 489741686  3 KQDLASARRRLRGTNLKSRKRALKILHDARRN 34
Cdd:NF038026  1 KTDLASAYRRLKSPNIKTRKRALKIIKEHKRN 32
 
Name Accession Description Interval E-value
RsaX20_sORF NF038026
putative metal homeostasis protein; Members of this family average just 38 amino acids in ...
3-34 1.94e-04

putative metal homeostasis protein; Members of this family average just 38 amino acids in length, but are widely conserved among species of the Gram-positive genera that include Staphylococcus, Enterococcus, Leuconostoc, and Lactobacillus. Expression of an RNA designated RsaX20, which encodes a member of this family, was studied in a Staphylococcus aureus of possible structural RNAs, and shown to be controlled by Fur-like transcription factor Zur. The broad conservation of the coding region across multiple species and protein-like pattern of amino acid substitutions in multiple sequence alignments strongly suggests that that members of this family are indeed translated into functional proteins.


Pssm-ID: 411619  Cd Length: 32  Bit Score: 33.43  E-value: 1.94e-04
                        10        20        30
                ....*....|....*....|....*....|..
gi 489741686  3 KQDLASARRRLRGTNLKSRKRALKILHDARRN 34
Cdd:NF038026  1 KTDLASAYRRLKSPNIKTRKRALKIIKEHKRN 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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