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Conserved domains on  [gi|489736716|ref|WP_003640811|]
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MULTISPECIES: YlbG family protein [Lactiplantibacillus]

Protein Classification

YlbG family protein( domain architecture ID 10008581)

YlbG family protein is a DUF2129 domain-containing protein; similar to Lactococcus lactis UPF0298 protein YdgE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlbG COG4471
Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];
3-83 9.06e-38

Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];


:

Pssm-ID: 443568  Cd Length: 92  Bit Score: 121.88  E-value: 9.06e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489736716   3 FTVKPRRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNFGERVD 82
Cdd:COG4471    1 FMMQKRQGLIVWLYSLKQAKQLRRYGHVHYVSKKMKYAVLYVDQDDIEETMEKLERLPFVKKVEPSYRPDIKTEFENAKP 80


                 .
gi 489736716  83 Q 83
Cdd:COG4471   81 D 81
 
Name Accession Description Interval E-value
YlbG COG4471
Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];
3-83 9.06e-38

Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];


Pssm-ID: 443568  Cd Length: 92  Bit Score: 121.88  E-value: 9.06e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489736716   3 FTVKPRRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNFGERVD 82
Cdd:COG4471    1 FMMQKRQGLIVWLYSLKQAKQLRRYGHVHYVSKKMKYAVLYVDQDDIEETMEKLERLPFVKKVEPSYRPDIKTEFENAKP 80


                 .
gi 489736716  83 Q 83
Cdd:COG4471   81 D 81
DUF2129 pfam09902
Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various ...
 8-77 2.80e-32

Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various hypothetical prokaryotic proteins, has no known function. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 430913  Cd Length: 70  Bit Score: 107.18  E-value: 2.80e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489736716    8 RRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNF 77
Cdd:pfam09902   1 RQGLIVYLYSLKQAKQLRRYGDVHYVSKKMKYVVLYVNQEDVEETIEKLKSLKFVKKVEPSYRPELKTEF 70
PRK02886 PRK02886
hypothetical protein; Provisional
 8-83 5.65e-24

hypothetical protein; Provisional


Pssm-ID: 179491  Cd Length: 87  Bit Score: 87.04  E-value: 5.65e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489736716   8 RRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNFGERVDQ 83
Cdd:PRK02886   5 RQGIIVWLHSLKQAKQLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNKLSSLPFVKRVEPSYRPFLKTEFESKPDK 80
 
Name Accession Description Interval E-value
YlbG COG4471
Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];
3-83 9.06e-38

Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];


Pssm-ID: 443568  Cd Length: 92  Bit Score: 121.88  E-value: 9.06e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489736716   3 FTVKPRRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNFGERVD 82
Cdd:COG4471    1 FMMQKRQGLIVWLYSLKQAKQLRRYGHVHYVSKKMKYAVLYVDQDDIEETMEKLERLPFVKKVEPSYRPDIKTEFENAKP 80


                 .
gi 489736716  83 Q 83
Cdd:COG4471   81 D 81
DUF2129 pfam09902
Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various ...
 8-77 2.80e-32

Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various hypothetical prokaryotic proteins, has no known function. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 430913  Cd Length: 70  Bit Score: 107.18  E-value: 2.80e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489736716    8 RRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNF 77
Cdd:pfam09902   1 RQGLIVYLYSLKQAKQLRRYGDVHYVSKKMKYVVLYVNQEDVEETIEKLKSLKFVKKVEPSYRPELKTEF 70
PRK02886 PRK02886
hypothetical protein; Provisional
 8-83 5.65e-24

hypothetical protein; Provisional


Pssm-ID: 179491  Cd Length: 87  Bit Score: 87.04  E-value: 5.65e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489736716   8 RRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNFGERVDQ 83
Cdd:PRK02886   5 RQGIIVWLHSLKQAKQLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNKLSSLPFVKRVEPSYRPFLKTEFESKPDK 80
PRK02302 PRK02302
hypothetical protein; Provisional
 3-77 1.90e-13

hypothetical protein; Provisional


Pssm-ID: 179410  Cd Length: 89  Bit Score: 60.05  E-value: 1.90e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489736716   3 FTVKPRRSLIVYMHSMKQVRQLKRFGLIQYQSRKEHYVVLYMDESQIPAATTKIKKLNFVRRVEPSYRPDVAMNF 77
Cdd:PRK02302   2 FEKQERIGLIVYLYYNRDARKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAIDEIDQNF 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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