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Conserved domains on  [gi|489706807|ref|WP_003610944|]
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MULTISPECIES: transposase [Bacilli]

Protein Classification

transposase( domain architecture ID 11459289)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; similar to Escherichia coli IS150 protein InsAB

CATH:  1.10.10.10
Gene Ontology:  GO:0006313|GO:0003677|GO:0004803
PubMed:  20885819

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
3-82 1.57e-15

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


:

Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 64.95  E-value: 1.57e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489706807  3 RYSPEFKQSLVEM-HNQGRSYTELAAEYGPSADSIRNWVKLYTVHEVDGEKWT------QADVNALQKENAKLREELEIL 75
Cdd:COG2963   7 RYSPEFKAEAVRLvLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDgrttpeQAEIRRLRKELRRLEMENDIL 86


                ....*..
gi 489706807 76 KRAAVLL 82
Cdd:COG2963  87 KKAAALL 93
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
3-82 1.57e-15

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 64.95  E-value: 1.57e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489706807  3 RYSPEFKQSLVEM-HNQGRSYTELAAEYGPSADSIRNWVKLYTVHEVDGEKWT------QADVNALQKENAKLREELEIL 75
Cdd:COG2963   7 RYSPEFKAEAVRLvLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDgrttpeQAEIRRLRKELRRLEMENDIL 86


                ....*..
gi 489706807 76 KRAAVLL 82
Cdd:COG2963  87 KKAAALL 93
HTH_Tnp_1 pfam01527
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 3-72 1.46e-05

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.


Pssm-ID: 426308 [Multi-domain]  Cd Length: 75  Bit Score: 39.26  E-value: 1.46e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489706807   3 RYSPEFKQSLV-EMHNQGRSYTELAAEYGPSADSIRNWVKLYT-VHEVDGEKWTQADvnaLQKENAKLREEL 72
Cdd:pfam01527  6 RFSEEFKLRAVkEVLEPGRTVKEVARRHGVSPNTLYQWRRQYEgGMGASPARPRLTA---LEEENRRLKREL 74
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
3-82 1.57e-15

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 64.95  E-value: 1.57e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489706807  3 RYSPEFKQSLVEM-HNQGRSYTELAAEYGPSADSIRNWVKLYTVHEVDGEKWT------QADVNALQKENAKLREELEIL 75
Cdd:COG2963   7 RYSPEFKAEAVRLvLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDgrttpeQAEIRRLRKELRRLEMENDIL 86


                ....*..
gi 489706807 76 KRAAVLL 82
Cdd:COG2963  87 KKAAALL 93
HTH_Tnp_1 pfam01527
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 3-72 1.46e-05

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.


Pssm-ID: 426308 [Multi-domain]  Cd Length: 75  Bit Score: 39.26  E-value: 1.46e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489706807   3 RYSPEFKQSLV-EMHNQGRSYTELAAEYGPSADSIRNWVKLYT-VHEVDGEKWTQADvnaLQKENAKLREEL 72
Cdd:pfam01527  6 RFSEEFKLRAVkEVLEPGRTVKEVARRHGVSPNTLYQWRRQYEgGMGASPARPRLTA---LEEENRRLKREL 74
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
 8-43 8.89e-05

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 36.42  E-value: 8.89e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 489706807   8 FKQSLVEMHNQGRSYTELAAEYGPSADSIRNWVKLY 43
Cdd:pfam13518  1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRRY 36
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 13-50 2.00e-03

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 35.21  E-value: 2.00e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 489706807  13 VEMHNQGRSYTELAAEYGPSADSIRNWVKLYTVHEVDG 50
Cdd:COG3415   32 VLLLAEGLSVREIAERLGVSRSTVYRWLKRYREGGLAG 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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