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Conserved domains on  [gi|489560126|ref|WP_003464662|]
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MULTISPECIES: DUF1127 domain-containing protein [Pseudomonadaceae]

Protein Classification

DUF1127 domain-containing protein( domain architecture ID 10009314)

DUF1127 domain-containing protein similar to Escherichia coli YjiS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
21-71 2.74e-09

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


:

Pssm-ID: 444208  Cd Length: 61  Bit Score: 47.68  E-value: 2.74e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 489560126 21 AWLLRVIATLSLWQRRIVSRRQLARLDARLLADAGISENQRYAELQKPFWR 71
Cdd:COG5457  10 ALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
21-71 2.74e-09

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 47.68  E-value: 2.74e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 489560126 21 AWLLRVIATLSLWQRRIVSRRQLARLDARLLADAGISENQRYAELQKPFWR 71
Cdd:COG5457  10 ALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
DUF1127 pfam06568
Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial ...
 27-62 2.08e-04

Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.


Pssm-ID: 429007  Cd Length: 36  Bit Score: 34.70  E-value: 2.08e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 489560126  27 IATLSLWQRRIVSRRQLARLDARLLADAGISENQRY 62
Cdd:pfam06568  1 RAALRRWRRRRRTRRELARLSDRELADIGLSRSDIR 36
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
21-71 2.74e-09

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 47.68  E-value: 2.74e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 489560126 21 AWLLRVIATLSLWQRRIVSRRQLARLDARLLADAGISENQRYAELQKPFWR 71
Cdd:COG5457  10 ALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
DUF1127 pfam06568
Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial ...
 27-62 2.08e-04

Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.


Pssm-ID: 429007  Cd Length: 36  Bit Score: 34.70  E-value: 2.08e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 489560126  27 IATLSLWQRRIVSRRQLARLDARLLADAGISENQRY 62
Cdd:pfam06568  1 RAALRRWRRRRRTRRELARLSDRELADIGLSRSDIR 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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