|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-622 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 596.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 8 WKYLLILSVLAIGLVYSIPNLYPddpaiqisgassalsieqadvdraskalqdagiavkaasidergraglirltkqddq 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 88 lpakdivrralgddyvvalNLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERIR 167
Cdd:PRK05812 24 -------------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIR 84
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 168 YRSmpesngrIQLGFADSDTLDKAQRLIRKDYSdfelttverggqhilqlgLTQAKIAEIREYSIRQNLTTVRNRVNELG 247
Cdd:PRK05812 85 YGG-------VEITFRDAEDRDKAIALLRKLSS------------------LTEAELKEITEEALEQAIEIIRNRVNELG 139
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 248 VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRLQadpnaprgatetfsfreegrppvqlerELIITGDHVTD 327
Cdd:PRK05812 140 VAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------PVILTGDDITD 192
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 328 AQASFDENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFieqkpvtryvrqtiDGveqevaissfveekKIISLATIQ 407
Cdd:PRK05812 193 ASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL--------------DG--------------EVISAPVIQ 244
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 408 SPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFFGVL 486
Cdd:PRK05812 245 SAItGGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLI 324
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 487 ATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNLT 566
Cdd:PRK05812 325 ANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNIT 404
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 489555092 567 TLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFG-GRNFKKLWI 622
Cdd:PRK05812 405 TLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
88-622 |
6.28e-176 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 506.19 E-value: 6.28e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 88 LPAKDIVRRALGDDYVVALNLaqttpdWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDvrrkvyegeiksllrkerir 167
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALD-------------------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 168 yrsmpesngriqlgfADSDTldkaqrlirkdysdfelttverggqhilqlgltqakIAEIREYSIRQNLTTVRNRVNELG 247
Cdd:COG0342 55 ---------------EDGDG------------------------------------IREVTEEALDQAIEILRNRVNELG 83
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 248 VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRLQADPNAPRGATETFS--FREEGRPPVQLERELIITGDHV 325
Cdd:COG0342 84 VSEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAAVPAGSelLPCRDGQPYLLLGPVVLTGDDL 163
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 326 TDAQASFD-ENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFIEqkpvtryvrqtidgveqevaissfveekKIISLA 404
Cdd:COG0342 164 TDASAGFDqQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDG----------------------------EVISAP 215
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 405 TIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFF 483
Cdd:COG0342 216 VIQEPItGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLP 295
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 484 GVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDS 563
Cdd:COG0342 296 GLVANIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDA 375
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 489555092 564 NLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFGGRNFKKLWI 622
Cdd:COG0342 376 NVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
126-608 |
5.94e-134 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 397.43 E-value: 5.94e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 126 LGLDLSGGVHFLLEVDMDKALDVRrkvyegeiksllrkeriryrsmpesngriqlgfadsdtldkaqrlirkdysdfelt 205
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVLK-------------------------------------------------------- 24
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 206 tverggqhilqlgLTQAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLE 285
Cdd:TIGR01129 25 -------------LSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLE 91
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 286 FRLQAD-----PNAPRGATETFSFREEGRPP----VQLERELIITGDHVTDAQASFDE-NGRPQVNIRLDGHGGELMNRA 355
Cdd:TIGR01129 92 FRLVDDestspDDALAGNVPAGSELLDSRSGdpkyYLLKKSPVLTGDHITDATSSVDQrSGQPVVSFSLDSEGARIFGDF 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 356 TRNNVGRSMAVIFIEQkpvtryvrqtidgveqevaissfveekkIISLATIQSPL-GSQFRITGLNGQGESSELALLLRA 434
Cdd:TIGR01129 172 TQANIGKRLAIVLDNK----------------------------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRS 223
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 435 GGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGI 514
Cdd:TIGR01129 224 GALPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGI 303
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 515 AGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGII 594
Cdd:TIGR01129 304 AGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGII 383
|
490
....*....|....
gi 489555092 595 TSMFTAIMFTRGLV 608
Cdd:TIGR01129 384 ASLFTALVFTRLLL 397
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-106 |
3.03e-43 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 150.36 E-value: 3.03e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 2 LNKYPLWKYLLILSVLAIGLVYSIPNLYPDDPAIQISGASSALSIEQADVDRASKALQDAGIAVKAASIDerGRAGLIRL 81
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGAKVDEATLDRVEQALKAAGIPVKSIELE--GDSLLVRF 78
|
90 100
....*....|....*....|....*
gi 489555092 82 TKQDDQLPAKDIVRRALGDDYVVAL 106
Cdd:pfam13721 79 DSTDDQLKAKDVLQRALGDDYVVAL 103
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
448-608 |
1.39e-15 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 75.34 E-value: 1.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 448 TIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYR-FFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVD 526
Cdd:pfam02355 20 TVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 527 ANVLIFSRIREEL--ANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFT 604
Cdd:pfam02355 100 DTVVVFDRVRENLrkKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSSIFIA 179
|
....
gi 489555092 605 RGLV 608
Cdd:pfam02355 180 SPIL 183
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
468-619 |
6.47e-12 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 69.04 E-value: 6.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 468 AMIFVSLFIIAI-------YRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREEL- 539
Cdd:NF037998 447 SIIFLLILAIAImiyllfaYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLy 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 540 ANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFGGRNFKK 619
Cdd:NF037998 527 KNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-127 |
1.55e-05 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 44.61 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 1 MLNKYP-----LWKYLLILSVLAigLVYSIPNLYPDDPAIQI----SGAS--SALSIEQAdvdraskaLQDAGIAVKaaS 69
Cdd:PRK10629 1 MINPRMslrqlAWLGAVLLLLAA--LLLAWSALRQQESTLAIravhQGASlpDGFYVYQH--------LDANGIHIK--S 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 489555092 70 IDERGRAGLIRLTKQDDQLPAKDIVRRALGDDYVVAL-NLAQTTPDWLRSLGASPMKLG 127
Cdd:PRK10629 69 ITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-622 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 596.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 8 WKYLLILSVLAIGLVYSIPNLYPddpaiqisgassalsieqadvdraskalqdagiavkaasidergraglirltkqddq 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 88 lpakdivrralgddyvvalNLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERIR 167
Cdd:PRK05812 24 -------------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIR 84
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 168 YRSmpesngrIQLGFADSDTLDKAQRLIRKDYSdfelttverggqhilqlgLTQAKIAEIREYSIRQNLTTVRNRVNELG 247
Cdd:PRK05812 85 YGG-------VEITFRDAEDRDKAIALLRKLSS------------------LTEAELKEITEEALEQAIEIIRNRVNELG 139
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 248 VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRLQadpnaprgatetfsfreegrppvqlerELIITGDHVTD 327
Cdd:PRK05812 140 VAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------PVILTGDDITD 192
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 328 AQASFDENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFieqkpvtryvrqtiDGveqevaissfveekKIISLATIQ 407
Cdd:PRK05812 193 ASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL--------------DG--------------EVISAPVIQ 244
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 408 SPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFFGVL 486
Cdd:PRK05812 245 SAItGGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLI 324
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 487 ATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNLT 566
Cdd:PRK05812 325 ANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNIT 404
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 489555092 567 TLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFG-GRNFKKLWI 622
Cdd:PRK05812 405 TLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
2-619 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 530.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 2 LNKYPLWKYLLILSVLAIGLVYSIPNLYPDDPAIQISG-ASSALSIEQADvdrasKALQDAGIAVKaaSIDERGRAGLIR 80
Cdd:PRK12933 10 LNHYSAWKYVVLIVTIIILLLSAIPTWYGEDAAVQVSAkAGLLLNVVELR-----QLLQAQGINVK--RIDQKEGKTLIV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 81 LTKQDDQLPAKDIVRRALGDDYVVALNLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSL 160
Cdd:PRK12933 83 LDDDSQQSQAKTLLSSMVKEPKELTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 161 LRKERIRYRSMP-ESNGRIQLGFADSDTLDKAQRLIRKDYSDFELTTverGGQHILQLGLTQAKIAEIREYSIRQNLTTV 239
Cdd:PRK12933 163 LREQRIRGVSVRlDDSDQLAVTTPDNDARSAVRQFIQQNYPGWQVTN---SDDRGLQLKLSQQEKTKFRNLTVQQNLQIM 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 240 RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRLQADPnaprGATETFSFREEGRPPVQLERELI 319
Cdd:PRK12933 240 RSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVKES----GSVNAKVLKDKNGRPVYVARRPV 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 320 ITGDHVTDAQASFDENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFIEqkpvtrYVRQTIDGVEQEvaissfveeKK 399
Cdd:PRK12933 316 LGGEHIVDARASLGEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMATSYSE------YSRDEQGKTKQS---------EE 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 400 IISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAI 479
Cdd:PRK12933 381 VISVATIQSQLGDRFRITGAGSYQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALW 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 480 YRFFGVLATVALAFNLVLLVGLMSAI-GATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYS 558
Cdd:PRK12933 461 YRRLGWVANVALIANMVCLFGLLALIpGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFS 540
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489555092 559 AILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFgGRNFKK 619
Cdd:PRK12933 541 TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVY-GRDARR 600
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
88-622 |
6.28e-176 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 506.19 E-value: 6.28e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 88 LPAKDIVRRALGDDYVVALNLaqttpdWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDvrrkvyegeiksllrkerir 167
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALD-------------------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 168 yrsmpesngriqlgfADSDTldkaqrlirkdysdfelttverggqhilqlgltqakIAEIREYSIRQNLTTVRNRVNELG 247
Cdd:COG0342 55 ---------------EDGDG------------------------------------IREVTEEALDQAIEILRNRVNELG 83
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 248 VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRLQADPNAPRGATETFS--FREEGRPPVQLERELIITGDHV 325
Cdd:COG0342 84 VSEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAAVPAGSelLPCRDGQPYLLLGPVVLTGDDL 163
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 326 TDAQASFD-ENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFIEqkpvtryvrqtidgveqevaissfveekKIISLA 404
Cdd:COG0342 164 TDASAGFDqQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDG----------------------------EVISAP 215
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 405 TIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFF 483
Cdd:COG0342 216 VIQEPItGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLP 295
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 484 GVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDS 563
Cdd:COG0342 296 GLVANIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDA 375
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 489555092 564 NLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFGGRNFKKLWI 622
Cdd:COG0342 376 NVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
126-608 |
5.94e-134 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 397.43 E-value: 5.94e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 126 LGLDLSGGVHFLLEVDMDKALDVRrkvyegeiksllrkeriryrsmpesngriqlgfadsdtldkaqrlirkdysdfelt 205
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVLK-------------------------------------------------------- 24
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 206 tverggqhilqlgLTQAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLE 285
Cdd:TIGR01129 25 -------------LSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLE 91
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 286 FRLQAD-----PNAPRGATETFSFREEGRPP----VQLERELIITGDHVTDAQASFDE-NGRPQVNIRLDGHGGELMNRA 355
Cdd:TIGR01129 92 FRLVDDestspDDALAGNVPAGSELLDSRSGdpkyYLLKKSPVLTGDHITDATSSVDQrSGQPVVSFSLDSEGARIFGDF 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 356 TRNNVGRSMAVIFIEQkpvtryvrqtidgveqevaissfveekkIISLATIQSPL-GSQFRITGLNGQGESSELALLLRA 434
Cdd:TIGR01129 172 TQANIGKRLAIVLDNK----------------------------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRS 223
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 435 GGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGI 514
Cdd:TIGR01129 224 GALPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGI 303
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 515 AGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGII 594
Cdd:TIGR01129 304 AGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGII 383
|
490
....*....|....
gi 489555092 595 TSMFTAIMFTRGLV 608
Cdd:TIGR01129 384 ASLFTALVFTRLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
231-622 |
1.79e-117 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 366.86 E-value: 1.79e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 231 SIRQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRLQADPNAPRGATETFSFREEGRP 310
Cdd:PRK13024 60 ALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPPPGVGGPVVGPDEGKDT 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 311 PVqlERELIITGDHVTDAQASFD--ENGRPQVNIRLDGHGGELMNRATRNNV-----GRSMAVifieqkpvtryvrqtid 383
Cdd:PRK13024 140 AV--LNPVLLSGDDLTDAGAKFDqdQTNRPSVSLKLKSEGAKKWAKVTEKNSkkgppNNRIAI----------------- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 384 gveqevaissfVEEKKIISLATIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGI 462
Cdd:PRK13024 201 -----------VLDPKVISAPTVNQPInGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 463 ASTEWAMIFVSLFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANG 542
Cdd:PRK13024 270 IAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKG 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 543 LPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFGGRNFKKLWI 622
Cdd:PRK13024 350 KSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKRGDKKPFLF 429
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
113-608 |
5.67e-109 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 347.48 E-value: 5.67e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 113 PDWLRSlgaSPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERIRYRSMPESNGRIQLGFADSDTLDKAQ 192
Cdd:PRK14726 37 PSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTGLTGNGQTVQVRITDPAQTQAAV 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 193 RLIRkdysdfELT----------------TVERGGQHILQLGLTQAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQ 256
Cdd:PRK14726 114 DALK------PLTapvsagglggssiqelTLQEGGEGQLRLQLTDAGIDYRVSSALTQSIEVVRRRVAELGTTEPLIRRQ 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 257 GANRIVVELPGVQDTAEAKRILGKTASLEFRL--------QADPNAPRGATETFSFREEGRPPVQLERELIITGDHVTDA 328
Cdd:PRK14726 188 GDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLvdssmpaqEALNGRPPATSEVLYSLDDPPVPYLVERRAFVSGENLVDA 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 329 QASFD-ENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFIEQKPVTRYVRQTIDGveQEVAISSFVEEKKIISLATI- 406
Cdd:PRK14726 268 QPVFDpQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVLDGQVISAPVIDEAITG--GEGRISGNFSEQGANDLAVLl 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 407 -QSPLGSQFRITglngqgesselalllragglaapmyfaEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFFGV 485
Cdd:PRK14726 346 rAGALPATLTVV---------------------------EERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 486 LATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNL 565
Cdd:PRK14726 399 IAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANV 478
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 489555092 566 TTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLV 608
Cdd:PRK14726 479 TILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLV 521
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
239-608 |
2.44e-51 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 189.44 E-value: 2.44e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 239 VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRLQADPNAPRGATE---------TFSFREegr 309
Cdd:PRK13023 76 MRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRgtppadseiVYSFDD--- 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 310 PPVQ--LERELIITGDHVTDAQASF-DENGRPQVNIRLDGHGGELMNRATRNNVGRSMAVIFieqkpvtryvrqtidgve 386
Cdd:PRK13023 153 PPVGylLKKTPILTGHDITDAKASIsADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVV------------------ 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 387 qevaissfveEKKIISLATIQSPLG-SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGIAST 465
Cdd:PRK13023 215 ----------DNQVVSAPTVSGPLDtSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAA 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 466 EWAMIFVSLFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPV 545
Cdd:PRK13023 285 LLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSV 364
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489555092 546 QRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLV 608
Cdd:PRK13023 365 VQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
447-601 |
3.82e-48 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 166.66 E-value: 3.82e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 447 RTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFFGVLATV-ALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAV 525
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIaALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSV 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489555092 526 DANVLIFSRIREEL--ANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAI 601
Cdd:TIGR00916 115 DDTVVIFDRIREELrkYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-106 |
3.03e-43 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 150.36 E-value: 3.03e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 2 LNKYPLWKYLLILSVLAIGLVYSIPNLYPDDPAIQISGASSALSIEQADVDRASKALQDAGIAVKAASIDerGRAGLIRL 81
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGAKVDEATLDRVEQALKAAGIPVKSIELE--GDSLLVRF 78
|
90 100
....*....|....*....|....*
gi 489555092 82 TKQDDQLPAKDIVRRALGDDYVVAL 106
Cdd:pfam13721 79 DSTDDQLKAKDVLQRALGDDYVVAL 103
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
446-605 |
2.60e-41 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 161.56 E-value: 2.60e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 446 ERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAV 525
Cdd:PRK12911 896 EEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAV 975
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 526 DANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTR 605
Cdd:PRK12911 976 DANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTK 1055
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
448-608 |
1.39e-15 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 75.34 E-value: 1.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 448 TIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYR-FFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVD 526
Cdd:pfam02355 20 TVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 527 ANVLIFSRIREEL--ANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFT 604
Cdd:pfam02355 100 DTVVVFDRVRENLrkKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSSIFIA 179
|
....
gi 489555092 605 RGLV 608
Cdd:pfam02355 180 SPIL 183
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
448-600 |
7.89e-15 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 75.47 E-value: 7.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 448 TIGPSLGAENIAKGIasteWAMIfVSLFIIAIY---RF---FGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIvLT- 520
Cdd:COG0341 122 FVGPTVGKELTRKAL----LALL-VALIGILIYiafRFewrFAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAAL-LTi 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 521 LGMAVDANVLIFSRIRE-----------ELANglpvqRALHEGFDRAysaILDSnLTTLLVGGILFAMGTGPVKGFAVTL 589
Cdd:COG0341 196 IGYSLNDTVVVFDRIREnlrkyrkmtlaEIIN-----LSINQTLSRT---INTS-LTTLLVVLALLFFGGETLRDFALAL 266
|
170
....*....|....*
gi 489555092 590 SLGIIT----SMFTA 600
Cdd:COG0341 267 LIGIIVgtysSIFIA 281
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
468-603 |
8.68e-14 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 74.51 E-value: 8.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 468 AMIFVSLFIIAIYR-FFGVLAT-VALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPV 545
Cdd:COG1033 227 ALLLILLLLFLFFRsLRGVLLPlLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDK 306
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 489555092 546 QRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMF 603
Cdd:COG1033 307 REALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTL 364
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
467-619 |
7.47e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 71.81 E-value: 7.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 467 WAMIFVSLFIIAIYR--FFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLP 544
Cdd:COG1033 613 LALLLIFLLLLLAFRslRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKGGD 692
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489555092 545 VQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLvnLIFGGRNFKK 619
Cdd:COG1033 693 LEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLAALLLLPAL--LLLLDPRIAK 765
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
468-619 |
6.47e-12 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 69.04 E-value: 6.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 468 AMIFVSLFIIAI-------YRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREEL- 539
Cdd:NF037998 447 SIIFLLILAIAImiyllfaYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLy 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 540 ANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNLIFGGRNFKK 619
Cdd:NF037998 527 KNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
448-603 |
6.63e-12 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 65.76 E-value: 6.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 448 TIGPSLGAENIAKGIASTEWAMIFVSLFI-IAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVD 526
Cdd:TIGR00966 87 AVGPSVGGELARKAVLALLAALVLILIYItVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSIN 166
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489555092 527 ANVLIFSRIREEL--ANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMF 603
Cdd:TIGR00966 167 DTVVVFDRIRENLrkYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIFI 245
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
241-594 |
9.86e-12 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 67.21 E-value: 9.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 241 NRVNELGVAEPLVQRQGANRIVVELPGVqDTAEAKRILGKTASLEFRLQADPNaprgatetfsfreegrppvqlERELII 320
Cdd:PRK08343 74 SRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGVFEARIQTPGN---------------------NNETVL 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 321 TGDHVTD-AQASFDENGR-PQVNIRLDGHGGELMNRATRNnvgrSMAVIFIEQKPVTRYVR-QTID--GVEQEVAiSSFV 395
Cdd:PRK08343 132 TGDDIESvGSPSQDPSGGaWGVPFTLSEDGAEKFAEVAKG----KGATDDPSGHPLDMYLDgELIYaaPLSPDLA-SGLA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 396 EEKKIISLAtiqsplgsqFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE-----NIAkGIAstewAMI 470
Cdd:PRK08343 207 SGPVVITVG---------STGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQfkkgsLIA-GLL----ALL 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 471 FVSLFIIAIYRFFGVLATVAL--AFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSrirEELANG-LPVQR 547
Cdd:PRK08343 273 AVALVVFLRYREPRIALPMVItsLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITD---EVLHEGkVPSRK 349
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 489555092 548 ALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGII 594
Cdd:PRK08343 350 VFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVL 396
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
449-601 |
1.27e-11 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 66.03 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 449 IGPSLGAENIAKGIASTEWAMIFVSLFIIaiYRFFGVLAT---VALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAV 525
Cdd:PRK13021 116 VGPQVGQELAEQGGLALLVAMLCILGYLS--YRFEWRLASgalFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSL 193
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489555092 526 DANVLIFSRIREEL--ANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAI 601
Cdd:PRK13021 194 NDSIIIADRIRELLiaKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSI 271
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
361-619 |
6.37e-11 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 65.25 E-value: 6.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 361 GRSMAVIFieQKPVTryvrqtIDGVEQEVAISSFVEEKKIISLATIQSPLgsqFRITGLNGQGESSELALLLRAGGLAAP 440
Cdd:PRK13024 487 GTRYEIRT--DQPVD------LEQVRADLKELGLGEVNIVTFGSDNNQVL---VRTYGILSDDEEADTEIVAKLKNALKN 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 441 MYFAEER---TIGPSLGAENIAKGIASTEWAMIFVSLFIIaiYRF---FGVLATVALAFNLVLLVGLMSAIGATLTLPGI 514
Cdd:PRK13024 556 DKGGTIPsseTVGPTVGKELARNAIIAVLIALIGILLYIL--IRFewtFSLGAILALLHDVLIVIGFFSLFRLEVDLTFI 633
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 515 AGIvLTL-GMAVDANVLIFSRIREELAnglpvqraLHEGFDRAY---SAILDS-------NLTTLLVGGILFAMGTGPVK 583
Cdd:PRK13024 634 AAI-LTIiGYSINDTVVVFDRIRENLR--------LYKKKDLREivnKSINQTlsrtintSLTTLLVLLALLIFGGSSLR 704
|
250 260 270
....*....|....*....|....*....|....*.
gi 489555092 584 GFAVTLSLGIITSMFTAImFTRGLVNLIFGGRNFKK 619
Cdd:PRK13024 705 NFSLALLVGLIVGTYSSI-FIAAPLWLDLEKRRLKK 739
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
468-604 |
3.32e-09 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 58.84 E-value: 3.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 468 AMIFVSLFII------AIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLtLGMAVDANVLIFSRIREELAN 541
Cdd:pfam03176 153 VVIFIILLIVyrsvvaALLPLLTVGLSLGAAQGLVAILAHILGIGLSTFALNLLVVLL-IAVGTDYALFLVSRYREELRA 231
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489555092 542 GLPVQRALHEGFDRAYSAILDSNLTtllVGGILFAMG---TGPVKGFAVTLSLGIITSMFTAIMFT 604
Cdd:pfam03176 232 GEDREEAVIRAVRGTGKVVTAAGLT---VAIAMLALSfarLPVFAQVGPTIAIGVLVDVLAALTLL 294
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
446-622 |
3.65e-09 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 59.85 E-value: 3.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 446 ERTIGPSLGaenIAKGIAStewamIFVSLFIIAIYR--FFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGM 523
Cdd:TIGR00921 188 EREFGKDMG---TTMAISG-----ILVVLVLLLDFKrwWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 524 AVDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMF 603
Cdd:TIGR00921 260 GIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLV 339
|
170
....*....|....*....
gi 489555092 604 TRGLVNLIFGGRNFKKLWI 622
Cdd:TIGR00921 340 LPALLQSIDIGREKVKKEI 358
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
468-606 |
1.06e-08 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 58.33 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 468 AMIFVsLFIIAIYRFFGVLATVA-LAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANvlIFsrireeLANGLPVQ 546
Cdd:COG4258 650 LLILL-LLLLRLRSLRRALRVLLpPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDYA--LF------FTEGLLDK 720
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 547 RALHegfdRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRG 606
Cdd:COG4258 721 GELA----RTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLALLLAPLLAPR 776
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
455-601 |
4.22e-08 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 56.31 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 455 AENIAKGIASTEWAMIFVSLFIIAIyrFFG-------VLATVALAfnLVLLVGLMSAIGATLTLPGIAGIVLT---LGMA 524
Cdd:COG2409 164 NEAFEEDLGRAELITLPVALVVLLL--VFRslvaallPLLTAGLA--VGVALGLLALLAAFTDVSSFAPNLLTmlgLGVG 239
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489555092 525 VDANVLIFSRIREELANGLPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAI 601
Cdd:COG2409 240 IDYALFLVSRYREELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAAL 316
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
412-608 |
9.22e-07 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 51.93 E-value: 9.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 412 SQFRITGLNGQGESSELALLLRAGGLAAPMY-FAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYRF-FGVLATV 489
Cdd:PRK13023 530 SALVIIGSQEVGDDAEQTVAVKLRGEFEQDYsFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWqLALGAVL 609
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 490 ALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELA--NGLPVQRALHEGFDRAYSAILDSNLTT 567
Cdd:PRK13023 610 STLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRryKSAPLPAIIDASINQTLSRTLLTSFVT 689
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489555092 568 LLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLV 608
Cdd:PRK13023 690 FLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLL 730
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
477-610 |
9.63e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 52.15 E-value: 9.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 477 IAIYRFFGVLATVALAFN-----LVLLVGLMSAIGATLTLPGIAGI----------VLTLGMAVDANVLIFSRIREELAN 541
Cdd:TIGR00921 572 MTIAGAILVLMILLAVFRnpikaVFPLIAIGSGILWAIGLMGLRGIpsflamattiSIILGLGMDYSIHLAERYFEERKE 651
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489555092 542 GLPVQrALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAIMFTRGLVNL 610
Cdd:TIGR00921 652 HGPKE-AITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALLVL 719
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
440-613 |
1.15e-06 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 50.70 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 440 PMYFAEERTIGPSLGAENIAKGIASTEWAMIFVSLFIIAIYR-FFGVLATVALAF-NLVLLVGLMSAIGATLTLPGIAGI 517
Cdd:PRK08578 115 SELNYSEKQIGPTFGSQFQEQALKAVGFAFIGMAVVVFLIFRtPVPSLAVILSAFsDIIIALALMNLFGIELSLATVAAL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 518 VLTLGMAVDANVLIFSRIreelangLPVQRALHEGFDRAYSAILDSNLTTllvggiLFAMgtgpvkgfavtLSLGIITSM 597
Cdd:PRK08578 195 LMLIGYSVDSDILLTTRV-------LKRRGTFDESIKRAMRTGITMTLTT------IAAM-----------AVLYIVSTI 250
|
170
....*....|....*..
gi 489555092 598 FTA-IMFTRGLVnLIFG 613
Cdd:PRK08578 251 PQAeVLANIAAV-LIFG 266
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-127 |
1.55e-05 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 44.61 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 1 MLNKYP-----LWKYLLILSVLAigLVYSIPNLYPDDPAIQI----SGAS--SALSIEQAdvdraskaLQDAGIAVKaaS 69
Cdd:PRK10629 1 MINPRMslrqlAWLGAVLLLLAA--LLLAWSALRQQESTLAIravhQGASlpDGFYVYQH--------LDANGIHIK--S 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 489555092 70 IDERGRAGLIRLTKQDDQLPAKDIVRRALGDDYVVAL-NLAQTTPDWLRSLGASPMKLG 127
Cdd:PRK10629 69 ITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
408-616 |
1.84e-04 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 44.71 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 408 SPLGSQFRITGLNGqGESSELALLLRAGGLAAPMY-FAEERTIGPSLGAEniakgIASTEWAMIFVSLFIIAIY---RF- 482
Cdd:PRK14726 621 SPRDALIRIASQDG-GENAEQSAVTLVRGELEDDYdFRRVEVVGPAVSGE-----LTMAATLGVLAALAAILIYiwiRFe 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 483 --FGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELA--NGLPVQRALHEGFDRAYS 558
Cdd:PRK14726 695 wqFAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRryKKMPLPILIDASINQTLS 774
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489555092 559 AILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITSMFTAImFTRGLVNLIFGGRN 616
Cdd:PRK14726 775 RTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSI-YIAAPVLIVFKLRP 831
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
118-143 |
6.36e-04 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 37.27 E-value: 6.36e-04
10 20
....*....|....*....|....*.
gi 489555092 118 SLGASPMKLGLDLSGGVHFLLEVDMD 143
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQP 26
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
468-621 |
6.89e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 42.65 E-value: 6.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 468 AMIFVSLFII--AIYRFFGVLATVAL----AFNLVLLVG-LMSAIGATLTLPGIAGIVLtLGMAVDANVLIFSRIREELA 540
Cdd:TIGR00833 755 AIVFMILALLlrAPVAPIVLIGSVALsylwALGLSVLAFqHILGAELHWSVLAGVFVLL-VALGVDYNMLLVSRIKEESP 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 541 NGL--PVQRALHEGFDRAYSAildsnltTLLVGGILFAMGTGP---VKGFAVTLSLGIITSMFTAIMFTRGLVNLIFGgr 615
Cdd:TIGR00833 834 AGNrtGIIRALGSTGGVITAA-------GLVFAGTMAALASAQltaIAQFGFTVGVGILLDTFIVRSVTVPALTLLLG-- 904
|
....*.
gi 489555092 616 nfKKLW 621
Cdd:TIGR00833 905 --RWIW 908
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
474-604 |
1.03e-03 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 42.29 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 474 LFIIAIYRFFGVLAT-VALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLPVQRALHEG 552
Cdd:TIGR03480 285 LLWLALRSPRLVFAVlVTLIVGLILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVA 364
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 489555092 553 FDRAYSAILdsnLTTLLVGGILFAMGTGPVKGFAvtlSLGII--TSMFTAIMFT 604
Cdd:TIGR03480 365 ARRMGAALL---LAALATAAGFFAFLPTDYKGVS---ELGIIagTGMFIALFVT 412
|
|
| Patched |
pfam02460 |
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic ... |
448-603 |
1.18e-03 |
|
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Pssm-ID: 308203 [Multi-domain] Cd Length: 793 Bit Score: 41.96 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 448 TIGPSLgaeniakgIASTEWAMIfvSLFIIA---IYRFFGVL-ATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGM 523
Cdd:pfam02460 636 TILPST--------IQNIVITLI--CMFIVCflfIPNPPCVFvITLAIASIDIGVFGFLSLWGVDLDPISMITIIMSIGF 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 524 AVDANVLIFSRIreelanglpVQRALHEGFDRAYSA-------ILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGIITS 596
Cdd:pfam02460 706 SVDFSAHIAYHF---------VRSRGDTPAERVVDAlealgwpVFQGGLSTILGVLVLLFVPSYMVVVFFKTVFLVVAIG 776
|
....*..
gi 489555092 597 MFTAIMF 603
Cdd:pfam02460 777 LLHGLFI 783
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
469-615 |
1.37e-03 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 41.90 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 469 MIFVSLFIIAIYRFFGVL-ATV--ALAFNLVLLVGL--MSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELA-NG 542
Cdd:pfam00873 338 LEAIVLVILVMFLFLQNWrATLipAIAIPLSLLGTFavMKAFGFSINTLTLGGLVLAIGLVVDDAIVVVENIERVLEeNG 417
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489555092 543 LPVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMG--TGPV-KGFAVTLSLGIITSMFTAIMFTRGLVNLIFGGR 615
Cdd:pfam00873 418 LKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGglTGRIfRQFAITIVLAILLSVLVALTLTPALCATLLKPR 493
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
470-594 |
2.65e-03 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 41.00 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 470 IFVSLFIIAIY---RF---FGVLATVALAFNLV----LLVGL----------MSAIGATLTLpgiagivltLGMAVDANV 529
Cdd:PRK12911 1240 LFGALGIILLYvslRFewrYAFSAICALIHDLLatcaVLVALhfflqkiqidLQAIGALMTV---------LGYSLNNTL 1310
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489555092 530 LIFSRIREELANGL--PVQRALHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTLSLGII 594
Cdd:PRK12911 1311 IIFDRIREDRQEKLftPMPILINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGIL 1377
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
467-594 |
5.12e-03 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 39.75 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 467 WAMIFVSLFIIAI-YRFFG--VLATVALAFNLVllvGLMSAIGAT------------LTLPGIAGIVLTLGMAV------ 525
Cdd:COG2409 521 LVIPVVLGLIFLLlLLLFRsvVAPLKAVLTNLL---SLGAALGVLvlvfqhgwlllgFTPGPLDSFVPLLLFVIlfglgm 597
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489555092 526 DANVLIFSRIREELANGLPVQRALHEGFDRAYSAIldsnlTT--LLVGGILFAMGTGPV---KGFAVTLSLGII 594
Cdd:COG2409 598 DYEVFLVSRIREEYDRGGGTREAVIRGLARTGRVI-----TSaaLIMAAVFAAFATSPLvflKQIGFGLAVGVL 666
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
468-604 |
6.63e-03 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 39.70 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 468 AMIFVslfIIAIYRFFG-----VLATVALAFNLVLLVGLMSAIGATL---TLpgiAGIVLTLGMAVDA------NVlifS 533
Cdd:COG0841 340 AILLV---VLVVFLFLRswratLIPAVAIPVSLIGTFAVMYLLGFSLnilTL---FALVLAIGIVVDDaivvveNI---E 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489555092 534 RIREElanGLPVQRALHEGFDRAYSAILDSNLTT-------LLVGGI---LFamgtgpvKGFAVTLSLGIITSMFTAIMF 603
Cdd:COG0841 411 RHMEE---GLSPLEAAIKGAREVAGAVIASTLTLvavflplAFMGGItgqLF-------RQFALTVAIALLISLFVALTL 480
|
.
gi 489555092 604 T 604
Cdd:COG0841 481 T 481
|
|
| |
