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Conserved domains on  [gi|489520514|ref|WP_003425309|]
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hypothetical protein [Pseudomonas syringae]

Protein Classification

Big_3_5 and MauL domain-containing protein( domain architecture ID 11046539)

Big_3_5 and MauL domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MauL cd04221
Methylamine utilization protein MauL; MauL is one of the products from the methylamine ...
 58-138 5.07e-38

Methylamine utilization protein MauL; MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.


:

Pssm-ID: 259883 [Multi-domain]  Cd Length: 83  Bit Score: 127.10  E-value: 5.07e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489520514  58 ASMDQRDQEFAPHVLAIHTGTQVKFPNSDNIRHQVYSFSTAKRFELR-LYEGTPSDPLLFDKPGVVVLGCNIHDWMVGYI 136
Cdd:cd04221    2 AEVKQKDKEFEPHVLVIKPGDTVSFPNSDDIRHNVYSFSPAKIFELLdQPPGTTKDVVLFDKAGVVVVGCNIHPIMRAWI 81


                 ..
gi 489520514 137 YV 138
Cdd:cd04221   82 LV 83
Invasin_D3 super family cl23771
Invasin, domain 3; Members of this family adopt a structure consisting of an ...
 25-50 5.78e-03

Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.


The actual alignment was detected with superfamily member smart00634:

Pssm-ID: 474048 [Multi-domain]  Cd Length: 92  Bit Score: 34.99  E-value: 5.78e-03
                           10        20
                   ....*....|....*....|....*.
gi 489520514    25 TFTAQVMDKEGKPLADAVVTLKGPPD 50
Cdd:smart00634  21 TLTATVTDANGNPVAGQEVTFTTPSG 46
 
Name Accession Description Interval E-value
MauL cd04221
Methylamine utilization protein MauL; MauL is one of the products from the methylamine ...
 58-138 5.07e-38

Methylamine utilization protein MauL; MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.


Pssm-ID: 259883 [Multi-domain]  Cd Length: 83  Bit Score: 127.10  E-value: 5.07e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489520514  58 ASMDQRDQEFAPHVLAIHTGTQVKFPNSDNIRHQVYSFSTAKRFELR-LYEGTPSDPLLFDKPGVVVLGCNIHDWMVGYI 136
Cdd:cd04221    2 AEVKQKDKEFEPHVLVIKPGDTVSFPNSDDIRHNVYSFSPAKIFELLdQPPGTTKDVVLFDKAGVVVVGCNIHPIMRAWI 81


                 ..
gi 489520514 137 YV 138
Cdd:cd04221   82 LV 83
PetE COG3794
Plastocyanin [Energy production and conversion];
67-139 2.76e-18

Plastocyanin [Energy production and conversion];


Pssm-ID: 443008 [Multi-domain]  Cd Length: 76  Bit Score: 75.80  E-value: 2.76e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489520514  67 FAPHVLAIHTGTQVKFPNSDNIRHQVYSFS-TAKRFELRLYEGTPSDPLLFDKPGVVVLGCNIHDWMVGYIYVT 139
Cdd:COG3794    3 FEPATLTVKPGDTVTWVNTDSVPHNVTSDDgPDGAFDSGLLAPGETFSVTFDEPGTYDYYCTPHPWMVGTIVVG 76
BID_1 smart00634
Bacterial Ig-like domain (group 1);
25-50 5.78e-03

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 34.99  E-value: 5.78e-03
                           10        20
                   ....*....|....*....|....*.
gi 489520514    25 TFTAQVMDKEGKPLADAVVTLKGPPD 50
Cdd:smart00634  21 TLTATVTDANGNPVAGQEVTFTTPSG 46
 
Name Accession Description Interval E-value
MauL cd04221
Methylamine utilization protein MauL; MauL is one of the products from the methylamine ...
 58-138 5.07e-38

Methylamine utilization protein MauL; MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.


Pssm-ID: 259883 [Multi-domain]  Cd Length: 83  Bit Score: 127.10  E-value: 5.07e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489520514  58 ASMDQRDQEFAPHVLAIHTGTQVKFPNSDNIRHQVYSFSTAKRFELR-LYEGTPSDPLLFDKPGVVVLGCNIHDWMVGYI 136
Cdd:cd04221    2 AEVKQKDKEFEPHVLVIKPGDTVSFPNSDDIRHNVYSFSPAKIFELLdQPPGTTKDVVLFDKAGVVVVGCNIHPIMRAWI 81


                 ..
gi 489520514 137 YV 138
Cdd:cd04221   82 LV 83
PetE COG3794
Plastocyanin [Energy production and conversion];
67-139 2.76e-18

Plastocyanin [Energy production and conversion];


Pssm-ID: 443008 [Multi-domain]  Cd Length: 76  Bit Score: 75.80  E-value: 2.76e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489520514  67 FAPHVLAIHTGTQVKFPNSDNIRHQVYSFS-TAKRFELRLYEGTPSDPLLFDKPGVVVLGCNIHDWMVGYIYVT 139
Cdd:COG3794    3 FEPATLTVKPGDTVTWVNTDSVPHNVTSDDgPDGAFDSGLLAPGETFSVTFDEPGTYDYYCTPHPWMVGTIVVG 76
BID_1 smart00634
Bacterial Ig-like domain (group 1);
25-50 5.78e-03

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 34.99  E-value: 5.78e-03
                           10        20
                   ....*....|....*....|....*.
gi 489520514    25 TFTAQVMDKEGKPLADAVVTLKGPPD 50
Cdd:smart00634  21 TLTATVTDANGNPVAGQEVTFTTPSG 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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