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Conserved domains on  [gi|489513089|ref|WP_003417932|]
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MULTISPECIES: histidine phosphatase family protein [Mycobacterium]

Protein Classification

histidine phosphatase family protein( domain architecture ID 10001383)

histidine phosphatase family protein is a probable phosphatase that may catalyze the dephosphorylation of a phosphorylated substrate involving a conserved catalytic histidine residue which becomes phosphorylated during the reaction

CATH:  3.40.50.1240
Gene Ontology:  GO:0016791
PubMed:  18092946
SCOP:  3000781

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PhoE COG0406
Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];
36-229 3.55e-26

Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];


:

Pssm-ID: 440175 [Multi-domain]  Cd Length: 195  Bit Score: 100.40  E-value: 3.55e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  36 TLTFIRNAQSQANADGIIDTDMpGSGLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGLQ 115
Cdd:COG0406    3 RLYLVRHGETEWNAEGRLQGRL-DVPLTELGRAQARALAERLADIPFDAVYSSPLQRARQTAEALAEALGLPVEVDPRLR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089 116 AINAGWFNGKPESMANSTYMLAPADWLAGDVHNTIPGSISGTEFNSQFSAAVRKIYDS-GHNTPVVFSQGVAIMIWtLMN 194
Cdd:COG0406   82 EIDFGDWEGLTFAELEARYPEALAAWLADPAEFRPPGGESLADVQARVRAALEELLARhPGGTVLVVTHGGVIRAL-LAH 160
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 489513089 195 ARNSRDSLLTTHPLPNIGRVVITGNPvTGWRLVEW 229
Cdd:COG0406  161 LLGLPLEAFWRLRIDNASVTVLEFDD-GRWRLVAL 194
 
Name Accession Description Interval E-value
PhoE COG0406
Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];
36-229 3.55e-26

Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];


Pssm-ID: 440175 [Multi-domain]  Cd Length: 195  Bit Score: 100.40  E-value: 3.55e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  36 TLTFIRNAQSQANADGIIDTDMpGSGLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGLQ 115
Cdd:COG0406    3 RLYLVRHGETEWNAEGRLQGRL-DVPLTELGRAQARALAERLADIPFDAVYSSPLQRARQTAEALAEALGLPVEVDPRLR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089 116 AINAGWFNGKPESMANSTYMLAPADWLAGDVHNTIPGSISGTEFNSQFSAAVRKIYDS-GHNTPVVFSQGVAIMIWtLMN 194
Cdd:COG0406   82 EIDFGDWEGLTFAELEARYPEALAAWLADPAEFRPPGGESLADVQARVRAALEELLARhPGGTVLVVTHGGVIRAL-LAH 160
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 489513089 195 ARNSRDSLLTTHPLPNIGRVVITGNPvTGWRLVEW 229
Cdd:COG0406  161 LLGLPLEAFWRLRIDNASVTVLEFDD-GRWRLVAL 194
His_Phos_1 pfam00300
Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so ...
37-229 4.63e-22

Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.


Pssm-ID: 459751 [Multi-domain]  Cd Length: 194  Bit Score: 89.58  E-value: 4.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089   37 LTFIRNAQSQANADGII--DTDMPgsgLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGL 114
Cdd:pfam00300   1 LYLVRHGETEWNLEGRFqgRTDSP---LTELGREQAEALAERLAGEPFDAIYSSPLKRARQTAEIIAEALGLPVEIDPRL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  115 QAINAGWFNGKPESMANSTYMLAPADWLAGDVHNTIPGSISGTEFNSQFSAAVRKIYDSGHNTPV-VFSQGVAI--MIWT 191
Cdd:pfam00300  78 REIDFGDWEGLTFEEIAERYPEEYDAWLADPADYRPPGGESLADVRARVRAALEELAARHPGKTVlVVSHGGVIraLLAH 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 489513089  192 LMNARNSRdslLTTHPLPN--IGRVVITGNpvtGWRLVEW 229
Cdd:pfam00300 158 LLGLPLEA---LRRFPLDNasLSILEFDGG---GWVLVLL 191
PGAM smart00855
Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase ...
36-187 4.83e-17

Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate... Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.


Pssm-ID: 214859 [Multi-domain]  Cd Length: 158  Bit Score: 75.58  E-value: 4.83e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089    36 TLTFIRNAQSQANADGIIDTDmPGSGLSADGKAEAQQVAHQVSRR---DVDSIYSSPMAADQQTAGPLAGELGkqveiLP 112
Cdd:smart00855   1 RLYLIRHGETEWNREGRLYGD-TDVPLTELGRAQAEALGRLLASLllpRFDVVYSSPLKRARQTAEALAIALG-----LP 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089   113 GLQAINAGWFNGKPESMANSTYMLAPADWLA---GDVHNTIPGSISGTEFNSQFSAAVRKI---YDSGHNTPVVFSQGVA 186
Cdd:smart00855  75 GLRERDFGAWEGLTWDEIAAKYPEEYLAAWRdpyDPAPPAPPGGESLADLVERVEPALDELiatADASGQNVLIVSHGGV 154

                   .
gi 489513089   187 I 187
Cdd:smart00855 155 I 155
HP_PGM_like cd07067
Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly ...
36-115 1.37e-11

Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG.


Pssm-ID: 132718 [Multi-domain]  Cd Length: 153  Bit Score: 60.41  E-value: 1.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  36 TLTFIRNAQSQANADGIIDTDmPGSGLSADGKAEAQQVAHQVSRR--DVDSIYSSPM--AadQQTAGPLAGEL-GKQVEI 110
Cdd:cd07067    1 RLYLVRHGESEWNAEGRFQGW-TDVPLTEKGREQARALGKRLKELgiKFDRIYSSPLkrA--IQTAEIILEELpGLPVEV 77

                 ....*
gi 489513089 111 LPGLQ 115
Cdd:cd07067   78 DPRLR 82
PRK15004 PRK15004
adenosylcobalamin/alpha-ribazole phosphatase;
37-185 2.52e-09

adenosylcobalamin/alpha-ribazole phosphatase;


Pssm-ID: 184966 [Multi-domain]  Cd Length: 199  Bit Score: 55.06  E-value: 2.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  37 LTFIRNAQSQANADGII--DTDMPgsgLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGL 114
Cdd:PRK15004   3 LWLVRHGETQANVDGLYsgHAPTP---LTARGIEQAQNLHTLLRDVPFDLVLCSELERAQHTARLVLSDRQLPVHIIPEL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089 115 QAINAG-WfngkpeSMANSTYML-----APADWLAgDVHNTIPgsiSGTEFNSQFSAAVRKI------YDSGHNTPVVFS 182
Cdd:PRK15004  80 NEMFFGdW------EMRHHRDLMqedaeNYAAWCN-DWQHAIP---TNGEGFQAFSQRVERFiarlsaFQHYQNLLIVSH 149

                 ...
gi 489513089 183 QGV 185
Cdd:PRK15004 150 QGV 152
 
Name Accession Description Interval E-value
PhoE COG0406
Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];
36-229 3.55e-26

Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];


Pssm-ID: 440175 [Multi-domain]  Cd Length: 195  Bit Score: 100.40  E-value: 3.55e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  36 TLTFIRNAQSQANADGIIDTDMpGSGLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGLQ 115
Cdd:COG0406    3 RLYLVRHGETEWNAEGRLQGRL-DVPLTELGRAQARALAERLADIPFDAVYSSPLQRARQTAEALAEALGLPVEVDPRLR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089 116 AINAGWFNGKPESMANSTYMLAPADWLAGDVHNTIPGSISGTEFNSQFSAAVRKIYDS-GHNTPVVFSQGVAIMIWtLMN 194
Cdd:COG0406   82 EIDFGDWEGLTFAELEARYPEALAAWLADPAEFRPPGGESLADVQARVRAALEELLARhPGGTVLVVTHGGVIRAL-LAH 160
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 489513089 195 ARNSRDSLLTTHPLPNIGRVVITGNPvTGWRLVEW 229
Cdd:COG0406  161 LLGLPLEAFWRLRIDNASVTVLEFDD-GRWRLVAL 194
His_Phos_1 pfam00300
Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so ...
37-229 4.63e-22

Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.


Pssm-ID: 459751 [Multi-domain]  Cd Length: 194  Bit Score: 89.58  E-value: 4.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089   37 LTFIRNAQSQANADGII--DTDMPgsgLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGL 114
Cdd:pfam00300   1 LYLVRHGETEWNLEGRFqgRTDSP---LTELGREQAEALAERLAGEPFDAIYSSPLKRARQTAEIIAEALGLPVEIDPRL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  115 QAINAGWFNGKPESMANSTYMLAPADWLAGDVHNTIPGSISGTEFNSQFSAAVRKIYDSGHNTPV-VFSQGVAI--MIWT 191
Cdd:pfam00300  78 REIDFGDWEGLTFEEIAERYPEEYDAWLADPADYRPPGGESLADVRARVRAALEELAARHPGKTVlVVSHGGVIraLLAH 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 489513089  192 LMNARNSRdslLTTHPLPN--IGRVVITGNpvtGWRLVEW 229
Cdd:pfam00300 158 LLGLPLEA---LRRFPLDNasLSILEFDGG---GWVLVLL 191
PGAM smart00855
Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase ...
36-187 4.83e-17

Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate... Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.


Pssm-ID: 214859 [Multi-domain]  Cd Length: 158  Bit Score: 75.58  E-value: 4.83e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089    36 TLTFIRNAQSQANADGIIDTDmPGSGLSADGKAEAQQVAHQVSRR---DVDSIYSSPMAADQQTAGPLAGELGkqveiLP 112
Cdd:smart00855   1 RLYLIRHGETEWNREGRLYGD-TDVPLTELGRAQAEALGRLLASLllpRFDVVYSSPLKRARQTAEALAIALG-----LP 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089   113 GLQAINAGWFNGKPESMANSTYMLAPADWLA---GDVHNTIPGSISGTEFNSQFSAAVRKI---YDSGHNTPVVFSQGVA 186
Cdd:smart00855  75 GLRERDFGAWEGLTWDEIAAKYPEEYLAAWRdpyDPAPPAPPGGESLADLVERVEPALDELiatADASGQNVLIVSHGGV 154

                   .
gi 489513089   187 I 187
Cdd:smart00855 155 I 155
HP_PGM_like cd07067
Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly ...
36-115 1.37e-11

Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG.


Pssm-ID: 132718 [Multi-domain]  Cd Length: 153  Bit Score: 60.41  E-value: 1.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  36 TLTFIRNAQSQANADGIIDTDmPGSGLSADGKAEAQQVAHQVSRR--DVDSIYSSPM--AadQQTAGPLAGEL-GKQVEI 110
Cdd:cd07067    1 RLYLVRHGESEWNAEGRFQGW-TDVPLTEKGREQARALGKRLKELgiKFDRIYSSPLkrA--IQTAEIILEELpGLPVEV 77

                 ....*
gi 489513089 111 LPGLQ 115
Cdd:cd07067   78 DPRLR 82
PRK15004 PRK15004
adenosylcobalamin/alpha-ribazole phosphatase;
37-185 2.52e-09

adenosylcobalamin/alpha-ribazole phosphatase;


Pssm-ID: 184966 [Multi-domain]  Cd Length: 199  Bit Score: 55.06  E-value: 2.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  37 LTFIRNAQSQANADGII--DTDMPgsgLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGL 114
Cdd:PRK15004   3 LWLVRHGETQANVDGLYsgHAPTP---LTARGIEQAQNLHTLLRDVPFDLVLCSELERAQHTARLVLSDRQLPVHIIPEL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089 115 QAINAG-WfngkpeSMANSTYML-----APADWLAgDVHNTIPgsiSGTEFNSQFSAAVRKI------YDSGHNTPVVFS 182
Cdd:PRK15004  80 NEMFFGdW------EMRHHRDLMqedaeNYAAWCN-DWQHAIP---TNGEGFQAFSQRVERFiarlsaFQHYQNLLIVSH 149

                 ...
gi 489513089 183 QGV 185
Cdd:PRK15004 150 QGV 152
PRK07238 PRK07238
bifunctional RNase H/acid phosphatase; Provisional
24-170 2.54e-04

bifunctional RNase H/acid phosphatase; Provisional


Pssm-ID: 180903 [Multi-domain]  Cd Length: 372  Bit Score: 41.50  E-value: 2.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  24 GACGGPTqprsiTLTFIRNAQSQANADGiidtDMPGSG---LSADGKAEAQQVAHQVSRR-DVDSIYSSPMAADQQTAGP 99
Cdd:PRK07238 166 GARGTPT-----RLLLLRHGQTELSVQR----RYSGRGnpeLTEVGRRQAAAAARYLAARgGIDAVVSSPLQRARDTAAA 236
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489513089 100 LAGELGKQVEILPGLQAINAGWFNGKPESMANSTYMLAPADWLAgDVHNTIPGSISGTEFNSQFSAAVRKI 170
Cdd:PRK07238 237 AAKALGLDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLA-DTSVAPPGGESFDAVARRVRRARDRL 306
PRK03482 PRK03482
phosphoglycerate mutase GpmB;
40-187 2.85e-03

phosphoglycerate mutase GpmB;


Pssm-ID: 179583 [Multi-domain]  Cd Length: 215  Bit Score: 37.78  E-value: 2.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489513089  40 IRNAQSQANADGIID--TDMPgsgLSADGKAEAQQVAHQVSRRDVDSIYSSPMAADQQTAGPLAGELGKQVEILPGLQAI 117
Cdd:PRK03482   7 VRHGETQWNAERRIQgqSDSP---LTAKGEQQAMQVAERAKELGITHIISSDLGRTRRTAEIIAQACGCDIIFDPRLREL 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489513089 118 NAGWFngkpESMANSTYMLAPADWLAGDVHNTIPGSISGTEFNSQFSAAVRKIYDS-----GHNTPVVFSQGVAI 187
Cdd:PRK03482  84 NMGVL----EKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESclelpQGSRPLLVSHGIAL 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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