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Conserved domains on  [gi|489507684|ref|WP_003412553|]
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MULTISPECIES: nitrate/nitrite transporter NrtS [Mycobacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NrtS super family cl41633
nitrate/nitrite transporter NrtS; NrtS family proteins were first identified and characterized ...
 28-82 1.00e-07

nitrate/nitrite transporter NrtS; NrtS family proteins were first identified and characterized in Synechococcus sp. PCC 7002. The homologous proteins NrtS1 and NrtS2 are encoded by two neighboring genes on Synechococcus sp. PCC 7002 genome. The heteromeric transporter was shown to transport nitrite as well as nitrate. This HMM hits both NrtS1 and NrtS2 proteins, which have extremely high sequence identity and conserved motifs.


The actual alignment was detected with superfamily member NF038050:

Pssm-ID: 411642  Cd Length: 56  Bit Score: 44.52  E-value: 1.00e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 489507684 28 TAAPTALIVGTVLCAVNQGATLAEGAATIGTWVRMVINYLVPFLVASVGYLGARR 82
Cdd:NF038050  1 TALRVALVVGTILFTINHGSALLQGKMTRTRWISALLTYLVPYCVNIHGQYISRR 55
 
Name Accession Description Interval E-value
NrtS NF038050
nitrate/nitrite transporter NrtS; NrtS family proteins were first identified and characterized ...
 28-82 1.00e-07

nitrate/nitrite transporter NrtS; NrtS family proteins were first identified and characterized in Synechococcus sp. PCC 7002. The homologous proteins NrtS1 and NrtS2 are encoded by two neighboring genes on Synechococcus sp. PCC 7002 genome. The heteromeric transporter was shown to transport nitrite as well as nitrate. This HMM hits both NrtS1 and NrtS2 proteins, which have extremely high sequence identity and conserved motifs.


Pssm-ID: 411642  Cd Length: 56  Bit Score: 44.52  E-value: 1.00e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 489507684 28 TAAPTALIVGTVLCAVNQGATLAEGAATIGTWVRMVINYLVPFLVASVGYLGARR 82
Cdd:NF038050  1 TALRVALVVGTILFTINHGSALLQGKMTRTRWISALLTYLVPYCVNIHGQYISRR 55
 
Name Accession Description Interval E-value
NrtS NF038050
nitrate/nitrite transporter NrtS; NrtS family proteins were first identified and characterized ...
 28-82 1.00e-07

nitrate/nitrite transporter NrtS; NrtS family proteins were first identified and characterized in Synechococcus sp. PCC 7002. The homologous proteins NrtS1 and NrtS2 are encoded by two neighboring genes on Synechococcus sp. PCC 7002 genome. The heteromeric transporter was shown to transport nitrite as well as nitrate. This HMM hits both NrtS1 and NrtS2 proteins, which have extremely high sequence identity and conserved motifs.


Pssm-ID: 411642  Cd Length: 56  Bit Score: 44.52  E-value: 1.00e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 489507684 28 TAAPTALIVGTVLCAVNQGATLAEGAATIGTWVRMVINYLVPFLVASVGYLGARR 82
Cdd:NF038050  1 TALRVALVVGTILFTINHGSALLQGKMTRTRWISALLTYLVPYCVNIHGQYISRR 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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