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Conserved domains on  [gi|489434828|ref|WP_003340363|]
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MULTISPECIES: DUF2388 domain-containing protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2388 super family cl23999
Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, ...
 1-105 2.70e-26

Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


The actual alignment was detected with superfamily member TIGR02448:

Pssm-ID: 451651  Cd Length: 101  Bit Score: 93.30  E-value: 2.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489434828    1 MSLLRNLGAVFLLTAAAGANASSFIVTTDAVVdavnAATRATSNVSSSLKDDKIVLAARDDAASFVASSGDIRSARLEGA 80
Cdd:TIGR02448   1 MRRKLLLAAALLLSLAMGAAAASFDATTRAVA----ASGAVTSDSTSSFRDDKLVIAARDDAASFVASDGAIRGARLEAA 76

                          90       100
                  ....*....|....*....|....*
gi 489434828   81 LQHIRQVLPELQASDSQLAQAILAI 105
Cdd:TIGR02448  77 LRQLRSDNPALQASDMELAQAILAQ 101
 
Name Accession Description Interval E-value
TIGR02448 TIGR02448
conserverd hypothetical protein; This family consists of small hypothetical proteins, about ...
 1-105 2.70e-26

conserverd hypothetical protein; This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 274137  Cd Length: 101  Bit Score: 93.30  E-value: 2.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489434828    1 MSLLRNLGAVFLLTAAAGANASSFIVTTDAVVdavnAATRATSNVSSSLKDDKIVLAARDDAASFVASSGDIRSARLEGA 80
Cdd:TIGR02448   1 MRRKLLLAAALLLSLAMGAAAASFDATTRAVA----ASGAVTSDSTSSFRDDKLVIAARDDAASFVASDGAIRGARLEAA 76

                          90       100
                  ....*....|....*....|....*
gi 489434828   81 LQHIRQVLPELQASDSQLAQAILAI 105
Cdd:TIGR02448  77 LRQLRSDNPALQASDMELAQAILAQ 101
DUF2388 pfam09498
Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, ...
 35-104 1.79e-23

Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 430648  Cd Length: 70  Bit Score: 85.41  E-value: 1.79e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489434828   35 VNAATRATSNVSSSLKDDKIVLAARDDAASFVASSGDIRSARLEGALQHIRQVLPELQASDSQLAQAILA 104
Cdd:pfam09498   1 VASSGDTTSSTTSSFRDDKLVVAARDDAASFVASDGEIRGARLEAALQHLRSENPQLQASDLELAQAILA 70
 
Name Accession Description Interval E-value
TIGR02448 TIGR02448
conserverd hypothetical protein; This family consists of small hypothetical proteins, about ...
 1-105 2.70e-26

conserverd hypothetical protein; This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 274137  Cd Length: 101  Bit Score: 93.30  E-value: 2.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489434828    1 MSLLRNLGAVFLLTAAAGANASSFIVTTDAVVdavnAATRATSNVSSSLKDDKIVLAARDDAASFVASSGDIRSARLEGA 80
Cdd:TIGR02448   1 MRRKLLLAAALLLSLAMGAAAASFDATTRAVA----ASGAVTSDSTSSFRDDKLVIAARDDAASFVASDGAIRGARLEAA 76

                          90       100
                  ....*....|....*....|....*
gi 489434828   81 LQHIRQVLPELQASDSQLAQAILAI 105
Cdd:TIGR02448  77 LRQLRSDNPALQASDMELAQAILAQ 101
DUF2388 pfam09498
Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, ...
 35-104 1.79e-23

Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 430648  Cd Length: 70  Bit Score: 85.41  E-value: 1.79e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489434828   35 VNAATRATSNVSSSLKDDKIVLAARDDAASFVASSGDIRSARLEGALQHIRQVLPELQASDSQLAQAILA 104
Cdd:pfam09498   1 VASSGDTTSSTTSSFRDDKLVVAARDDAASFVASDGEIRGARLEAALQHLRSENPQLQASDLELAQAILA 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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