|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
13-217 |
4.05e-130 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 364.61 E-value: 4.05e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 13 EQFCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAEL 92
Cdd:PRK08295 4 KDYDELEDEELVELARSGDKEALEYLIEKYKNFVRAKARSYFLIGADREDIVQEGMIGLYKAIRDYDKDKLSSFKSFAEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 93 CITRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISGAKALNPEDLIISKEEFDDIEMKMGELLSELERKV 172
Cdd:PRK08295 84 CITRQIITAIKTANRQKHIPLNSYVSLDKPIYDEESDRTLLDVISEAKVTDPEELIISKEELEDIEEKIEELLSELEKEV 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489309709 173 LVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLELREIS 217
Cdd:PRK08295 164 LELYLDGKSYQEIAEELNRHVKSIDNALQRVKRKLEKYLENREIT 208
|
|
| spore_sigH |
TIGR02859 |
RNA polymerase sigma-H factor; Members of this protein family are RNA polymerase sigma-H ... |
15-212 |
5.89e-120 |
|
RNA polymerase sigma-H factor; Members of this protein family are RNA polymerase sigma-H factor for sporulation in endospore-forming bacteria. This protein is also called Sigma-30 and SigH. Although rather close homologs in Listeria score well against this model, Listeria does not form spores and the role of the related sigma factor in that genus is in doubt. [Transcription, Transcription factors, Cellular processes, Sporulation and germination]
Pssm-ID: 131906 [Multi-domain] Cd Length: 198 Bit Score: 338.70 E-value: 5.89e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 15 FCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCI 94
Cdd:TIGR02859 1 FKQLEDEEIVELARQGNTHALEYLINKYKNFVRAKARSYFLIGADKEDIIQEGMIGLYKAIRDFRPDKLSSFKAFAELCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 95 TRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISGAKALNPEDLIISKEEFDDIEMKMGELLSELERKVLV 174
Cdd:TIGR02859 81 TRQIITAIKTATRQKHIPLNSYVSLNKPIYDEESDRTLLDVISGAKVTDPEELIISQEEYGDIESKMNELLSDLEWKVLQ 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 489309709 175 LYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLE 212
Cdd:TIGR02859 161 SYLDGKSYQEIACDLNRHVKSIDNALQRVKRKLEKYLE 198
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
19-217 |
6.87e-25 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 96.22 E-value: 6.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 19 EDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDklTSFKAFAELCITRQI 98
Cdd:COG1595 3 SDEELLERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGR--GSFRAWLYRIARNLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 99 ITAIKTATRQKHIplnsyvsLDKPIYDEESDrtlldvisgakALNPEDLIISKEEFDDIEMKMGElLSELERKVLVL-YL 177
Cdd:COG1595 81 IDHLRKRRRRREL-------LDELAEELPDE-----------AADPEEALEAEELLEALLAALER-LPPRQREVLVLrYL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489309709 178 DGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLELREIS 217
Cdd:COG1595 142 EGLSYAEIAEILGISEGTVKSRLSRARKKLREALEEEGAL 181
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
38-107 |
6.12e-15 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 66.84 E-value: 6.12e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 38 LITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQIITAIKTATR 107
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPERGVSFSTWLYTIIRNAIIDYLRKQRR 70
|
|
| HTH_LUXR |
smart00421 |
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon |
163-207 |
2.62e-05 |
|
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
Pssm-ID: 197715 [Multi-domain] Cd Length: 58 Bit Score: 40.59 E-value: 2.62e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489309709 163 ELLSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKL 207
Cdd:smart00421 2 ASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKL 46
|
|
| LuxR_C_like |
cd06170 |
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ... |
165-207 |
2.70e-04 |
|
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.
Pssm-ID: 99777 [Multi-domain] Cd Length: 57 Bit Score: 37.90 E-value: 2.70e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 489309709 165 LSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKL 207
Cdd:cd06170 1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKL 43
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
13-217 |
4.05e-130 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 364.61 E-value: 4.05e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 13 EQFCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAEL 92
Cdd:PRK08295 4 KDYDELEDEELVELARSGDKEALEYLIEKYKNFVRAKARSYFLIGADREDIVQEGMIGLYKAIRDYDKDKLSSFKSFAEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 93 CITRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISGAKALNPEDLIISKEEFDDIEMKMGELLSELERKV 172
Cdd:PRK08295 84 CITRQIITAIKTANRQKHIPLNSYVSLDKPIYDEESDRTLLDVISEAKVTDPEELIISKEELEDIEEKIEELLSELEKEV 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489309709 173 LVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLELREIS 217
Cdd:PRK08295 164 LELYLDGKSYQEIAEELNRHVKSIDNALQRVKRKLEKYLENREIT 208
|
|
| spore_sigH |
TIGR02859 |
RNA polymerase sigma-H factor; Members of this protein family are RNA polymerase sigma-H ... |
15-212 |
5.89e-120 |
|
RNA polymerase sigma-H factor; Members of this protein family are RNA polymerase sigma-H factor for sporulation in endospore-forming bacteria. This protein is also called Sigma-30 and SigH. Although rather close homologs in Listeria score well against this model, Listeria does not form spores and the role of the related sigma factor in that genus is in doubt. [Transcription, Transcription factors, Cellular processes, Sporulation and germination]
Pssm-ID: 131906 [Multi-domain] Cd Length: 198 Bit Score: 338.70 E-value: 5.89e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 15 FCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCI 94
Cdd:TIGR02859 1 FKQLEDEEIVELARQGNTHALEYLINKYKNFVRAKARSYFLIGADKEDIIQEGMIGLYKAIRDFRPDKLSSFKAFAELCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 95 TRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISGAKALNPEDLIISKEEFDDIEMKMGELLSELERKVLV 174
Cdd:TIGR02859 81 TRQIITAIKTATRQKHIPLNSYVSLNKPIYDEESDRTLLDVISGAKVTDPEELIISQEEYGDIESKMNELLSDLEWKVLQ 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 489309709 175 LYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLE 212
Cdd:TIGR02859 161 SYLDGKSYQEIACDLNRHVKSIDNALQRVKRKLEKYLE 198
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
19-217 |
6.87e-25 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 96.22 E-value: 6.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 19 EDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDklTSFKAFAELCITRQI 98
Cdd:COG1595 3 SDEELLERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGR--GSFRAWLYRIARNLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 99 ITAIKTATRQKHIplnsyvsLDKPIYDEESDrtlldvisgakALNPEDLIISKEEFDDIEMKMGElLSELERKVLVL-YL 177
Cdd:COG1595 81 IDHLRKRRRRREL-------LDELAEELPDE-----------AADPEEALEAEELLEALLAALER-LPPRQREVLVLrYL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489309709 178 DGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLELREIS 217
Cdd:COG1595 142 EGLSYAEIAEILGISEGTVKSRLSRARKKLREALEEEGAL 181
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
33-211 |
3.13e-23 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 91.25 E-value: 3.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 33 DALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKltSFKAFAELCITRQIITAIKtatRQKHIP 112
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEG--SFKAWLFRIARNLILDYLR---RKRRLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 113 LNSYVSLDKPIYDEesdrtlldvisgakalNPEDLIISKEEFDDIEMKMgELLSELERKVLVL-YLDGRSYQEISEDLNR 191
Cdd:TIGR02937 76 RELDLLEELLDSDP----------------SPEEELEQEEEREALREAL-EKLPEREREVLVLrYLEGLSYKEIAEILGI 138
|
170 180
....*....|....*....|
gi 489309709 192 HVKSIDNALQRVKRKLEKYL 211
Cdd:TIGR02937 139 SVGTVKRRLKRARKKLRELL 158
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
38-107 |
6.12e-15 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 66.84 E-value: 6.12e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 38 LITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQIITAIKTATR 107
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPERGVSFSTWLYTIIRNAIIDYLRKQRR 70
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
24-212 |
7.28e-14 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 67.14 E-value: 7.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 24 IERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDklTSFKAFaelcITRqiI---T 100
Cdd:PRK09652 1 VERVQRGDRAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGG--AAFYTW----LYR--IarnT 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 101 AIKTATRQKHIPLNSYVSLDKPIYDEESDRtlLDVISgakalNPEDLIISKEEFDDIEMKMgELLSELERKVLVL-YLDG 179
Cdd:PRK09652 73 AINYLRKQGRRPPASDVDAEEAEDFDLADA--LRDIS-----TPENELLSAELEQRVRAAI-ESLPEELRTAITLrEIEG 144
|
170 180 190
....*....|....*....|....*....|....*..
gi 489309709 180 RSYQEISEDLN---RHVKS-IDNALQRVKRKLEKYLE 212
Cdd:PRK09652 145 LSYEEIAEIMGcpiGTVRSrIFRAREALRAKLQPLLD 181
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
19-209 |
9.84e-12 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 62.15 E-value: 9.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 19 EDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFL-IGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQ 97
Cdd:COG1191 1 DLEELLRRYQEGDEEAREELIEEYLPLVKKIASRLAGrLPAELDDLIQVGLIGLIEAIDRFDPSKGVSFETYAVPRIRGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 98 II-----------------TAIKTATR---QKH--------------IPLNSY------------VSLDKPIYDEESdrt 131
Cdd:COG1191 81 ILdylrdedwvprsvrelaRKIEEAIEeleQELgreptdeeiaeelgISLEEVqealeaanayqlLSLDEPLEDGDD--- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 132 LLDVISGAkalNPEDLIISKEEFDDIeMKMGELLSELERKVLVL-YLDGRSYQEISEDLNRHVKSI----DNALQRVKRK 206
Cdd:COG1191 158 LLDLLESG---DPEEELEHEELREAL-AEAIEQLPERERLVLSLyYFEELTLKEIAEVLGVSESRVsrlhKKALARLREY 233
|
...
gi 489309709 207 LEK 209
Cdd:COG1191 234 LKE 236
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
14-212 |
1.15e-09 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 55.58 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 14 QFCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDkltsfKAFAELC 93
Cdd:PRK11923 1 MLTQEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGD-----SAFYTWL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 94 ITRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRtLLDVISgakalnPEDLIISKEEFDDIEMKMGELLSELERKVL 173
Cdd:PRK11923 76 YRIAINTAKNHLVSRGRRPPDSDVSSEDAEFYDGDHA-LKDIES------PERALLRDEIEGTVHRTIQQLPEDLRTALT 148
|
170 180 190
....*....|....*....|....*....|....*....
gi 489309709 174 VLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLE 212
Cdd:PRK11923 149 LREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKALQ 187
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
28-190 |
3.62e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 51.12 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 28 HVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKsirdfredKLTSFKAFAELcitRQIITAIktaTR 107
Cdd:PRK11924 8 ATGDKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWR--------KADLFNGKGSA---RTWLLTI---AR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 108 QKHIPLNSYVSLDKpiYDEESDrtLLDVISGAKALNPEDLIISKEEFDDIEMKMGELlSELERKVLVL-YLDGRSYQEIS 186
Cdd:PRK11924 74 NVCYDLLRRRRREK--AVLSDD--ALEPEFAETAETPEAALLAKDDLARIDRCLDAL-PVKQREVFLLrYVEGLSYREIA 148
|
....
gi 489309709 187 EDLN 190
Cdd:PRK11924 149 EILG 152
|
|
| PRK08583 |
PRK08583 |
RNA polymerase sigma factor SigB; Validated |
30-112 |
6.48e-08 |
|
RNA polymerase sigma factor SigB; Validated
Pssm-ID: 236306 [Multi-domain] Cd Length: 257 Bit Score: 51.62 E-value: 6.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 30 GDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQIITAIKTATRQK 109
Cdd:PRK08583 26 QDEEAQEKLVKHYKNLVESLAYKYSKGQSHHEDLVQVGMVGLLGAIRRYDPSFGRSFEAFAVPTIIGEIKRYLRDKTWSV 105
|
...
gi 489309709 110 HIP 112
Cdd:PRK08583 106 HVP 108
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
163-207 |
4.90e-07 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 45.14 E-value: 4.90e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 489309709 163 ELLSELERKVLVL-YLDGRSYQEISEDLNRHVKSIDNALQRVKRKL 207
Cdd:pfam08281 9 EELPPRQREVFLLrYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
18-215 |
1.62e-06 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 46.83 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 18 LEDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFrEDKLTSFKAFAeLCITRQ 97
Cdd:PRK13919 8 LSDEALLALVARGEEEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEF-DPRRGSARAWL-LALAHH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 98 iiTAIKTATRQKHIPL--------NSYVSLDKPIYDEESDRTLLDVISGAKALNPEdliiskeefddiemkmgellselE 169
Cdd:PRK13919 86 --AAVDHVRRRAARPQplepderePEAFDLPGPGLDEEGHLDRTRLGRALKALSPE-----------------------E 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489309709 170 RKVL-VLYLDGRSYQEISEDLNRHVKSIDNalqRVKRKLEKYLE-LRE 215
Cdd:PRK13919 141 RRVIeVLYYQGYTHREAAQLLGLPLGTLKT---RARRALSRLKEvLRE 185
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
20-209 |
1.35e-05 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 44.16 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 20 DEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDI---VQEGMIGLYKSIRDFREDKlTSFKAFAeLCITR 96
Cdd:PRK06811 5 EDNFIKELKKKNEKALEFIVDTYGNLVKKIVHKVLGTVNYSQLIeecVNDIFLSIWNNIDKFDEEK-GSFKKWI-AAISK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 97 -QIITAIKTATRQKHIPlnsyvsldkpIYDEESDRTLLDVisgakalnpEDLIISKEEFDDIeMKMGELLSELERKVLVL 175
Cdd:PRK06811 83 yKAIDYKRKLTKNNEID----------SIDEFILISEESI---------ENEIILKENKEEI-LKLINDLEKLDREIFIR 142
|
170 180 190
....*....|....*....|....*....|....*
gi 489309709 176 -YLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEK 209
Cdd:PRK06811 143 rYLLGEKIEEIAKKLGLTRSAIDNRLSRGRKKLQK 177
|
|
| CitB |
COG2197 |
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ... |
156-208 |
1.44e-05 |
|
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];
Pssm-ID: 441799 [Multi-domain] Cd Length: 131 Bit Score: 42.96 E-value: 1.44e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 156 DIEMKMG-------ELLSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLE 208
Cdd:COG2197 54 DIRMPGMdglealrRLLTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLG 113
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
144-215 |
2.56e-05 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 43.01 E-value: 2.56e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489309709 144 PEDLIISKEEFddieMKMGELLSEL---ERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLELRE 215
Cdd:PRK09639 93 PEEIWIRKEEI----TKVQEVLAKMterDRTVLLLRFSGYSYKEIAEALGIKESSVGTTLARAKKKFRKIYEQME 163
|
|
| HTH_LUXR |
smart00421 |
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon |
163-207 |
2.62e-05 |
|
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
Pssm-ID: 197715 [Multi-domain] Cd Length: 58 Bit Score: 40.59 E-value: 2.62e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489309709 163 ELLSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKL 207
Cdd:smart00421 2 ASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKL 46
|
|
| RpoD |
COG0568 |
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA ... |
117-190 |
3.97e-05 |
|
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440334 [Multi-domain] Cd Length: 268 Bit Score: 43.12 E-value: 3.97e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489309709 117 VSLDKPIyDEESDRTLLDVISGAKALNPEDLIISKEEFDDIEMKMGElLSELERKVLVLY--LDG---RSYQEISEDLN 190
Cdd:COG0568 161 VSLDAPV-GDDEDSELGDLLEDEEAPSPEEALEEELLREELREALDT-LTEREREILRLRfgLDDgepHTLEEIGKEFG 237
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
20-212 |
6.71e-05 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 41.99 E-value: 6.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 20 DEQVIERVHVGDSDALDYLITKYRNFVRAKArsYFLIG--ADREDIVQEGMIGLYKSIRDFREDKLTS---FKAFAELCI 94
Cdd:PRK09641 5 IKRLIKQVKKGDQNAFAELVDLYKDKIYQLC--YRMLGnrHEAEDAAQEAFIRAYVNIDSYDINRKFStwlYRIATNLTI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 95 TRqiitaiktaTRQKhiplNSYVSLDKPIYDEEsDRTLLDVISGAKALnPEDLIISKEEFDDIEMKMgELLSELERKVLV 174
Cdd:PRK09641 83 DR---------LRKR----KPDYYLDAEVAGTE-GLTMYSQLAADDAL-PEEQVVSLELQETIQEAI-LQLPEKYRTVIV 146
|
170 180 190
....*....|....*....|....*....|....*....
gi 489309709 175 L-YLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLE 212
Cdd:PRK09641 147 LkYIEDLSLKEISEILDLPVGTVKTRIHRGREALRKQLR 185
|
|
| CsgD |
COG2771 |
DNA-binding transcriptional regulator, CsgD family [Transcription]; |
165-207 |
8.97e-05 |
|
DNA-binding transcriptional regulator, CsgD family [Transcription];
Pssm-ID: 442052 [Multi-domain] Cd Length: 188 Bit Score: 41.67 E-value: 8.97e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 489309709 165 LSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKL 207
Cdd:COG2771 128 LTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIYRKL 170
|
|
| PRK08311 |
PRK08311 |
RNA polymerase sigma factor SigI; |
21-215 |
1.11e-04 |
|
RNA polymerase sigma factor SigI;
Pssm-ID: 236233 [Multi-domain] Cd Length: 237 Bit Score: 41.78 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 21 EQVIERVHVGDSDALDYLITKYRNFVrAKARSYFL---IGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQ 97
Cdd:PRK08311 6 EDILEKIKNGDEELREELIEEYKPFI-AKVVSSVCgryIDWENDDELSIGLIAFNEAIDSYDEEKGKSFLSFAELVIKRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 98 IITAIKTATRQKHIPLNSyvsldkpiYDEESDRTLLDVIsgakalnpEDLIISKEEFDDIEMKMgellsELERKVLVLYL 177
Cdd:PRK08311 85 LIDYFRKESKHNLVLSNS--------DEEDEEENDIEIE--------LSLEEYQEEEENEERRE-----EIEEFKKELKE 143
|
170 180 190
....*....|....*....|....*....|....*...
gi 489309709 178 DGRSYQEISEDLNRHVKSIDNALQrVKRKLEKYLELRE 215
Cdd:PRK08311 144 FGITFEDLVKESPKHRDTRENAIK-IAKTIAENEELLE 180
|
|
| PRK05572 |
PRK05572 |
RNA polymerase sporulation sigma factor, SigF/SigG family; |
5-78 |
1.16e-04 |
|
RNA polymerase sporulation sigma factor, SigF/SigG family;
Pssm-ID: 180137 [Multi-domain] Cd Length: 252 Bit Score: 41.88 E-value: 1.16e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489309709 5 NSKDKSIREQFCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDF 78
Cdd:PRK05572 4 EVKNKKKKPQLKDEENKELIKKSQDGDQEARDTLVEKNLRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKAVDKF 77
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
33-211 |
1.24e-04 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 41.01 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 33 DALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKsIRDFREDkLTSFKAFaelcitrqIITAIKTAT----RQ 108
Cdd:TIGR02985 1 EAFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWE-NRETLEI-SESIKAY--------LFTIVKNRClnylRH 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 109 KHIPLNSYVSLDKPIYDEESDRtlldvisgakalNPEDLIISKEEFDDIEMKMGElLSELERKVLVL-YLDGRSYQEISE 187
Cdd:TIGR02985 71 KQVEEKYQEELAEIEERELSEA------------DPEEELEAKELEEIIEEAIEK-LPEQCREIFILsRFEGLSNKEIAE 137
|
170 180
....*....|....*....|....
gi 489309709 188 DLNRHVKSIDNALQRVKRKLEKYL 211
Cdd:TIGR02985 138 ELGISVKTVEYHITKALKFLRKEL 161
|
|
| LuxR_C_like |
cd06170 |
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ... |
165-207 |
2.70e-04 |
|
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.
Pssm-ID: 99777 [Multi-domain] Cd Length: 57 Bit Score: 37.90 E-value: 2.70e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 489309709 165 LSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKL 207
Cdd:cd06170 1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKL 43
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
9-189 |
8.90e-04 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 39.29 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 9 KSIREQFCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKArSYFLIG----ADREDIVQEGMIGLYKSIRDFREDKLT 84
Cdd:PRK06288 7 GKIPKYAQQDETELWREYKKTGDPKIREYLILKYSPLVKYVA-GRIAVGmpqnVEFDDLVSYGVFGLIDAIEKFDPEREI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 85 SFKAFAELCI---------------------TRQIITAI--------KTATRQ-----------------KHIPLNSYVS 118
Cdd:PRK06288 86 KFKTYAVTRIrgaifdelrsidwiprsvrqkARQIERAIamlearlgRTPSDEeiadelgisleeynsllSKLSGTSVVS 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489309709 119 LDKPIY-DEESDR-TLLDVISGAKALNPeDLIISKEEFDDIEMKMGELLSELERKVLVL-YLDGRSYQEISEDL 189
Cdd:PRK06288 166 LNDLWFgGDEGDEvSLMDTLESPAALNP-DEIAEREEIKRVIVEAIKTLPEREKKVLILyYYEDLTLKEIGKVL 238
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
17-215 |
1.68e-03 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 38.00 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 17 QLEDEQVIERVHVG---DSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFREDklTSFKAFAELC 93
Cdd:PRK09640 7 ELNDEELVARVHVElfhVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGK--SKFKTWLYSI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 94 ITRQIITAIKtatrqkhiplnsyvsldkpiyDEESDRTLLDVISGAKALNPEDLIISKEEFDDIEMKMGELLSELERKVL 173
Cdd:PRK09640 85 TYNECITQYR---------------------KERRKRRLMDALSLDPLEEASEEKAPKPEERGGLDRWLVHVNPIDREIL 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489309709 174 VL-YLDGRSYQEISEDLNRHVKSIDNALQRVKRKL-EKYLELRE 215
Cdd:PRK09640 144 VLrFVAELEFQEIADIMHMGLSATKMRYKRALDKLrEKFAGLAE 187
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
143-215 |
2.11e-03 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 37.39 E-value: 2.11e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489309709 143 NPEDLIISKEEFDDIEMKMGELLSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLELRE 215
Cdd:PRK09642 86 NIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKEEE 158
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
53-191 |
3.46e-03 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 37.59 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 53 YFLIG--ADREDIVQEGMIGLYKSIRDFREDKltsfKAFaeLC--ITRQIITAIKTATRQKhiplNSYVS--LDKPIYDE 126
Cdd:PRK09636 22 YRMLGsvADAEDIVQEAWLRWNNADRAQIRDP----RAW--LTrvVTRLCLDRLRSARHRR----ETYVGpwLPEPVVEE 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489309709 127 ESDRTLLDVIsgakalnPEDLIISKeefddieMKMGELLSELERKVLVLYlD--GRSYQEISEDLNR 191
Cdd:PRK09636 92 LDDPLEAVVA-------AEDLSLAL-------MLALERLSPLERAAFLLH-DvfGVPFDEIASTLGR 143
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
18-218 |
3.77e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 37.18 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 18 LEDEQVIERVHVGDSDALDYLITkyRNFVRAKARSYFLIG--ADREDIVQEGMIGLYKSIRDFR--EDKLTS--FKAFAE 91
Cdd:PRK12524 11 VSDEALLVLYANGDPAAARALTL--RLAPRALAVATRVLGdrAEAEDVTQEAMLRLWRIAPDWRqgEARVSTwlYRVVCN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489309709 92 LCITRqiitaiKTATRQKHIplnsyvsldkpiyDEESDRTLLDVISGAkalnpEDLIISKEEFDDIEMKMGElLSELERK 171
Cdd:PRK12524 89 LCTDR------LRRRRRASV-------------DLDDAPEPADAAPGA-----EEALIEGDRMRALDAALAA-LPERQRQ 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489309709 172 VLVL-YLDGRSYQEISEDLNRHVKSIDNALQRVKRKLEKYLELREISL 218
Cdd:PRK12524 144 AVVLrHIEGLSNPEIAEVMEIGVEAVESLTARGKRALAALLAGQRAEL 191
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
18-82 |
6.27e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 36.48 E-value: 6.27e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489309709 18 LEDEQVIERVHVGDSDALDYLITKY-RNFVRAkARSYFLIGADREDIVQEGMIGLYKSIRDFREDK 82
Cdd:PRK11922 15 ASDRELVARVLAGDEAAFEALMRRHnRRLYRT-ARAILRNDAEAEDVVQEAYLRAFRALGTFRGDA 79
|
|
| |
