NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489212199|ref|WP_003120975|]
View 

MULTISPECIES: Rha family transcriptional regulator [Pseudomonas]

Protein Classification

Rha family transcriptional regulator( domain architecture ID 11466542)

Rha family transcriptional regulator is a regulatory protein found in temperate phage and bacterial prophage regions

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
pRha COG3646
Phage regulatory protein Rha [Mobilome: prophages, transposons];
22-124 4.61e-40

Phage regulatory protein Rha [Mobilome: prophages, transposons];


:

Pssm-ID: 442863 [Multi-domain]  Cd Length: 211  Bit Score: 138.20  E-value: 4.61e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489212199  22 VEIIGGKPTTTSLDVAKHFRKQHKDVLKSIANL--EC-SPEFTQRNFAPCT-RPGSNNKPEPYFRMTRDGFTFLCMGFTG 97
Cdd:COG3646    7 VTIKNGEPVTSSREIAELFGKRHKNVLRDIRKLisDLeSPEFGQLNFEESTyEDSQNGRERPEYLLTKDGFTLLVMGFTG 86

                         90       100
                 ....*....|....*....|....*..
gi 489212199  98 KEAARWKEAYINAFNKMEQALIEQPEI 124
Cdd:COG3646   87 KKAAEFKAAYIDRFNEMEEQLKQQSAL 113
 
Name Accession Description Interval E-value
pRha COG3646
Phage regulatory protein Rha [Mobilome: prophages, transposons];
22-124 4.61e-40

Phage regulatory protein Rha [Mobilome: prophages, transposons];


Pssm-ID: 442863 [Multi-domain]  Cd Length: 211  Bit Score: 138.20  E-value: 4.61e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489212199  22 VEIIGGKPTTTSLDVAKHFRKQHKDVLKSIANL--EC-SPEFTQRNFAPCT-RPGSNNKPEPYFRMTRDGFTFLCMGFTG 97
Cdd:COG3646    7 VTIKNGEPVTSSREIAELFGKRHKNVLRDIRKLisDLeSPEFGQLNFEESTyEDSQNGRERPEYLLTKDGFTLLVMGFTG 86

                         90       100
                 ....*....|....*....|....*..
gi 489212199  98 KEAARWKEAYINAFNKMEQALIEQPEI 124
Cdd:COG3646   87 KKAAEFKAAYIDRFNEMEEQLKQQSAL 113
Phage_pRha pfam09669
Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in ...
 31-116 1.57e-37

Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.


Pssm-ID: 462849 [Multi-domain]  Cd Length: 91  Bit Score: 127.72  E-value: 1.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489212199   31 TTSLDVAKHFRKQHKDVLKSIANL-----ECSPEFTQRNFAPCTRPGSNNKPEPYFRMTRDGFTFLCMGFTGKEAARWKE 105
Cdd:pfam09669   1 TTSLEVAELFGKRHKNVLRDIRKLikdleEFGEDFRELNFEESPYKDSQGRKRPCYLLTRDGFTLLAMGFTGKKAVEFKA 80

                          90
                  ....*....|.
gi 489212199  106 AYINAFNKMEQ 116
Cdd:pfam09669  81 KYIKAFNEMEE 91
phage_pRha TIGR02681
phage regulatory protein, rha family; Members of this protein family are found in temperate ...
 27-122 2.65e-25

phage regulatory protein, rha family; Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 131728  Cd Length: 108  Bit Score: 96.81  E-value: 2.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489212199   27 GKPTTTSLDVAKHFRKQHKDVLKSIANLECS---PEFTQRNFAPCTRPGSNNKPEPYFRMTRDGFTFLCMGFTGKEAARW 103
Cdd:TIGR02681  10 NQVVTDSLTMAQMFGKRHDNVIRDIKVLLIEaneTEFGQLNFEETQYQDEQNKKQPMFNLTEDGFTIVAMGYTTPKAMKM 89

                          90
                  ....*....|....*....
gi 489212199  104 KEAYINAFNKMEQALIEQP 122
Cdd:TIGR02681  90 KEKFIKEFNEMKEHLQKVQ 108
 
Name Accession Description Interval E-value
pRha COG3646
Phage regulatory protein Rha [Mobilome: prophages, transposons];
22-124 4.61e-40

Phage regulatory protein Rha [Mobilome: prophages, transposons];


Pssm-ID: 442863 [Multi-domain]  Cd Length: 211  Bit Score: 138.20  E-value: 4.61e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489212199  22 VEIIGGKPTTTSLDVAKHFRKQHKDVLKSIANL--EC-SPEFTQRNFAPCT-RPGSNNKPEPYFRMTRDGFTFLCMGFTG 97
Cdd:COG3646    7 VTIKNGEPVTSSREIAELFGKRHKNVLRDIRKLisDLeSPEFGQLNFEESTyEDSQNGRERPEYLLTKDGFTLLVMGFTG 86

                         90       100
                 ....*....|....*....|....*..
gi 489212199  98 KEAARWKEAYINAFNKMEQALIEQPEI 124
Cdd:COG3646   87 KKAAEFKAAYIDRFNEMEEQLKQQSAL 113
Phage_pRha pfam09669
Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in ...
 31-116 1.57e-37

Phage regulatory protein Rha (Phage_pRha); Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.


Pssm-ID: 462849 [Multi-domain]  Cd Length: 91  Bit Score: 127.72  E-value: 1.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489212199   31 TTSLDVAKHFRKQHKDVLKSIANL-----ECSPEFTQRNFAPCTRPGSNNKPEPYFRMTRDGFTFLCMGFTGKEAARWKE 105
Cdd:pfam09669   1 TTSLEVAELFGKRHKNVLRDIRKLikdleEFGEDFRELNFEESPYKDSQGRKRPCYLLTRDGFTLLAMGFTGKKAVEFKA 80

                          90
                  ....*....|.
gi 489212199  106 AYINAFNKMEQ 116
Cdd:pfam09669  81 KYIKAFNEMEE 91
phage_pRha TIGR02681
phage regulatory protein, rha family; Members of this protein family are found in temperate ...
 27-122 2.65e-25

phage regulatory protein, rha family; Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 131728  Cd Length: 108  Bit Score: 96.81  E-value: 2.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489212199   27 GKPTTTSLDVAKHFRKQHKDVLKSIANLECS---PEFTQRNFAPCTRPGSNNKPEPYFRMTRDGFTFLCMGFTGKEAARW 103
Cdd:TIGR02681  10 NQVVTDSLTMAQMFGKRHDNVIRDIKVLLIEaneTEFGQLNFEETQYQDEQNKKQPMFNLTEDGFTIVAMGYTTPKAMKM 89

                          90
                  ....*....|....*....
gi 489212199  104 KEAYINAFNKMEQALIEQP 122
Cdd:TIGR02681  90 KEKFIKEFNEMKEHLQKVQ 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH