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Conserved domains on  [gi|489208414|ref|WP_003117315|]
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MULTISPECIES: DUF2730 family protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2730 super family cl12395
Protein of unknown function (DUF2730); This family of proteins with unknown function appears ...
 13-94 2.09e-05

Protein of unknown function (DUF2730); This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.


The actual alignment was detected with superfamily member pfam10805:

Pssm-ID: 402439  Cd Length: 101  Bit Score: 40.06  E-value: 2.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489208414   13 VFTAAVGLYSLAAARRSSSKAEAEHLTNRLSSQDNRLLTLEQQMLHLPDSQQLSELAGDMKAMRAELSGLAKALDPLTRS 92
Cdd:pfam10805  13 VISLFGAVIWLLLSKTYAKREDLEKLADKVEEHDKRLTELEIKVDNLPTAKDLHRLQLLLTDLRGELKALRAEIRQISHQ 92


                  ..
gi 489208414   93 VD 94
Cdd:pfam10805  93 SD 94
 
Name Accession Description Interval E-value
DUF2730 pfam10805
Protein of unknown function (DUF2730); This family of proteins with unknown function appears ...
 13-94 2.09e-05

Protein of unknown function (DUF2730); This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.


Pssm-ID: 402439  Cd Length: 101  Bit Score: 40.06  E-value: 2.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489208414   13 VFTAAVGLYSLAAARRSSSKAEAEHLTNRLSSQDNRLLTLEQQMLHLPDSQQLSELAGDMKAMRAELSGLAKALDPLTRS 92
Cdd:pfam10805  13 VISLFGAVIWLLLSKTYAKREDLEKLADKVEEHDKRLTELEIKVDNLPTAKDLHRLQLLLTDLRGELKALRAEIRQISHQ 92


                  ..
gi 489208414   93 VD 94
Cdd:pfam10805  93 SD 94
 
Name Accession Description Interval E-value
DUF2730 pfam10805
Protein of unknown function (DUF2730); This family of proteins with unknown function appears ...
 13-94 2.09e-05

Protein of unknown function (DUF2730); This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.


Pssm-ID: 402439  Cd Length: 101  Bit Score: 40.06  E-value: 2.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489208414   13 VFTAAVGLYSLAAARRSSSKAEAEHLTNRLSSQDNRLLTLEQQMLHLPDSQQLSELAGDMKAMRAELSGLAKALDPLTRS 92
Cdd:pfam10805  13 VISLFGAVIWLLLSKTYAKREDLEKLADKVEEHDKRLTELEIKVDNLPTAKDLHRLQLLLTDLRGELKALRAEIRQISHQ 92


                  ..
gi 489208414   93 VD 94
Cdd:pfam10805  93 SD 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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