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Conserved domains on  [gi|489198153|ref|WP_003107436|]
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MULTISPECIES: paraquat-inducible protein A [Pseudomonadota]

Protein Classification

paraquat-inducible protein A( domain architecture ID 11459494)

paraquat-inducible membrane protein A

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PqiA COG2995
Intermembrane transporter PqiABC subunit PqiA [Cell wall/membrane/envelope biogenesis];
3-198 1.16e-96

Intermembrane transporter PqiABC subunit PqiA [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442234 [Multi-domain]  Cd Length: 211  Bit Score: 279.79  E-value: 1.16e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   3 ALDAGILVCGECHQLNRA---DGDEHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATI 79
Cdd:COG2995    8 GVLQGLIACPHCDLLLRRpplPPGERARCPRCGAVLHRRKPNSLQRTLALLLAALILYIPANLLPIMTTSLLGLSSEDTI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153  80 MEGVVELVHADMFPIAMVVFVASILVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALV 159
Cdd:COG2995   88 LSGVIALWQSGSYPVALLVFIASILVPLLKLLALLYLLLSVRRGRRRSPPGRTRLYRLVEFIGRWSMLDVFVVGILVALV 167
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 489198153 160 NFGNLASIEANLGAAAFASVVVLTMLAAVTFDPRLIWDN 198
Cdd:COG2995  168 KLGGLASVTPGPGAWAFAAVVVLTMLAAMSFDPRLIWDA 206
 
Name Accession Description Interval E-value
PqiA COG2995
Intermembrane transporter PqiABC subunit PqiA [Cell wall/membrane/envelope biogenesis];
3-198 1.16e-96

Intermembrane transporter PqiABC subunit PqiA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442234 [Multi-domain]  Cd Length: 211  Bit Score: 279.79  E-value: 1.16e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   3 ALDAGILVCGECHQLNRA---DGDEHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATI 79
Cdd:COG2995    8 GVLQGLIACPHCDLLLRRpplPPGERARCPRCGAVLHRRKPNSLQRTLALLLAALILYIPANLLPIMTTSLLGLSSEDTI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153  80 MEGVVELVHADMFPIAMVVFVASILVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALV 159
Cdd:COG2995   88 LSGVIALWQSGSYPVALLVFIASILVPLLKLLALLYLLLSVRRGRRRSPPGRTRLYRLVEFIGRWSMLDVFVVGILVALV 167
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 489198153 160 NFGNLASIEANLGAAAFASVVVLTMLAAVTFDPRLIWDN 198
Cdd:COG2995  168 KLGGLASVTPGPGAWAFAAVVVLTMLAAMSFDPRLIWDA 206
PRK15103 PRK15103
membrane integrity-associated transporter subunit PqiA;
24-206 6.48e-67

membrane integrity-associated transporter subunit PqiA;


Pssm-ID: 237910 [Multi-domain]  Cd Length: 419  Bit Score: 211.03  E-value: 6.48e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153  24 EHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHADMFPIAMVVFVASI 103
Cdd:PRK15103 234 DQPVCPRCHTKGYVRRRNSLQWTLALLVTSIMLYIPANILPIMVTELLGSKMPSTIMAGVILLWSEGSYPVALVIFIASI 313
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153 104 LVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGNLASIEANLGAAAFASVVVLT 183
Cdd:PRK15103 314 MVPTLKMIAIAWLCWDAKGHGKRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAIGALLFALVVILT 393
                        170       180
                 ....*....|....*....|...
gi 489198153 184 MLAAVTFDPRLIWDNTNLDDENE 206
Cdd:PRK15103 394 MFSAMTFDPRLSWDREPESEHEE 416
PqiA pfam04403
Paraquat-inducible protein A; Paraquat is a superoxide radical-generating agent. The promoter ...
43-197 9.76e-62

Paraquat-inducible protein A; Paraquat is a superoxide radical-generating agent. The promoter for the pqiA gene is also inducible by other known superoxide generators. This is predicted to be a family of integral membrane proteins, possibly located in the inner membrane. This family is related to NADH dehydrogenase subunit 2 (pfam00361).


Pssm-ID: 461293 [Multi-domain]  Cd Length: 154  Bit Score: 189.21  E-value: 9.76e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   43 LTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHADMFPIAMVVFVASILVPTFKLVGIALLLYSVQR 122
Cdd:pfam04403   1 LQRTLALALAALILYIPANLFPIMSISLLGITSEATLLGGVIALWQQGYWPLALLVFLASILVPLLKLLLLLYLLLSLRL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489198153  123 HQPmsARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGNLASIEANLGAAAFASVVVLTMLAAVTFDPRLIWD 197
Cdd:pfam04403  81 GRR--PPGLRRLLRLLEFLGPWSMLDVFVIGILVALVKLGDLADIEPGPGLWAFAALVLLTMLAASSFDPRLLWD 153
pqiA_fam TIGR00155
integral membrane protein, PqiA family; This family consists of uncharacterized predicted ...
10-197 9.27e-57

integral membrane protein, PqiA family; This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A. [Unknown function, General]


Pssm-ID: 272933 [Multi-domain]  Cd Length: 403  Bit Score: 184.27  E-value: 9.27e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   10 VCGECHQLNRADgdEHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHA 89
Cdd:TIGR00155 217 SCSACHTTILPA--QEPVCPRCSTPLYVRRRNSLQWTWALLVASIMLLLPANLLPISVIYLLGSKMEDTILSGVISLWSS 294
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   90 DMFPIAMVVFVASILVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGNLASIEA 169
Cdd:TIGR00155 295 GSYPVAAVVFLASIMVPTLKMIAMAWLLWDAHFKGQRDSERMHLLLEVVEFVGRWSMLDLFVIALLMSLVRRGGIMSFTP 374
                         170       180
                  ....*....|....*....|....*...
gi 489198153  170 NLGAAAFASVVVLTMLAAVTFDPRLIWD 197
Cdd:TIGR00155 375 GPGAFYFGAAVIMTMLSAMTFDSRLSWD 402
 
Name Accession Description Interval E-value
PqiA COG2995
Intermembrane transporter PqiABC subunit PqiA [Cell wall/membrane/envelope biogenesis];
3-198 1.16e-96

Intermembrane transporter PqiABC subunit PqiA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442234 [Multi-domain]  Cd Length: 211  Bit Score: 279.79  E-value: 1.16e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   3 ALDAGILVCGECHQLNRA---DGDEHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATI 79
Cdd:COG2995    8 GVLQGLIACPHCDLLLRRpplPPGERARCPRCGAVLHRRKPNSLQRTLALLLAALILYIPANLLPIMTTSLLGLSSEDTI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153  80 MEGVVELVHADMFPIAMVVFVASILVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALV 159
Cdd:COG2995   88 LSGVIALWQSGSYPVALLVFIASILVPLLKLLALLYLLLSVRRGRRRSPPGRTRLYRLVEFIGRWSMLDVFVVGILVALV 167
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 489198153 160 NFGNLASIEANLGAAAFASVVVLTMLAAVTFDPRLIWDN 198
Cdd:COG2995  168 KLGGLASVTPGPGAWAFAAVVVLTMLAAMSFDPRLIWDA 206
PRK15103 PRK15103
membrane integrity-associated transporter subunit PqiA;
24-206 6.48e-67

membrane integrity-associated transporter subunit PqiA;


Pssm-ID: 237910 [Multi-domain]  Cd Length: 419  Bit Score: 211.03  E-value: 6.48e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153  24 EHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHADMFPIAMVVFVASI 103
Cdd:PRK15103 234 DQPVCPRCHTKGYVRRRNSLQWTLALLVTSIMLYIPANILPIMVTELLGSKMPSTIMAGVILLWSEGSYPVALVIFIASI 313
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153 104 LVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGNLASIEANLGAAAFASVVVLT 183
Cdd:PRK15103 314 MVPTLKMIAIAWLCWDAKGHGKRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAIGALLFALVVILT 393
                        170       180
                 ....*....|....*....|...
gi 489198153 184 MLAAVTFDPRLIWDNTNLDDENE 206
Cdd:PRK15103 394 MFSAMTFDPRLSWDREPESEHEE 416
PqiA pfam04403
Paraquat-inducible protein A; Paraquat is a superoxide radical-generating agent. The promoter ...
43-197 9.76e-62

Paraquat-inducible protein A; Paraquat is a superoxide radical-generating agent. The promoter for the pqiA gene is also inducible by other known superoxide generators. This is predicted to be a family of integral membrane proteins, possibly located in the inner membrane. This family is related to NADH dehydrogenase subunit 2 (pfam00361).


Pssm-ID: 461293 [Multi-domain]  Cd Length: 154  Bit Score: 189.21  E-value: 9.76e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   43 LTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHADMFPIAMVVFVASILVPTFKLVGIALLLYSVQR 122
Cdd:pfam04403   1 LQRTLALALAALILYIPANLFPIMSISLLGITSEATLLGGVIALWQQGYWPLALLVFLASILVPLLKLLLLLYLLLSLRL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489198153  123 HQPmsARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGNLASIEANLGAAAFASVVVLTMLAAVTFDPRLIWD 197
Cdd:pfam04403  81 GRR--PPGLRRLLRLLEFLGPWSMLDVFVIGILVALVKLGDLADIEPGPGLWAFAALVLLTMLAASSFDPRLLWD 153
pqiA_fam TIGR00155
integral membrane protein, PqiA family; This family consists of uncharacterized predicted ...
10-197 9.27e-57

integral membrane protein, PqiA family; This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A. [Unknown function, General]


Pssm-ID: 272933 [Multi-domain]  Cd Length: 403  Bit Score: 184.27  E-value: 9.27e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   10 VCGECHQLNRADgdEHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHA 89
Cdd:TIGR00155 217 SCSACHTTILPA--QEPVCPRCSTPLYVRRRNSLQWTWALLVASIMLLLPANLLPISVIYLLGSKMEDTILSGVISLWSS 294
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   90 DMFPIAMVVFVASILVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGNLASIEA 169
Cdd:TIGR00155 295 GSYPVAAVVFLASIMVPTLKMIAMAWLLWDAHFKGQRDSERMHLLLEVVEFVGRWSMLDLFVIALLMSLVRRGGIMSFTP 374
                         170       180
                  ....*....|....*....|....*...
gi 489198153  170 NLGAAAFASVVVLTMLAAVTFDPRLIWD 197
Cdd:TIGR00155 375 GPGAFYFGAAVIMTMLSAMTFDSRLSWD 402
pqiA_fam TIGR00155
integral membrane protein, PqiA family; This family consists of uncharacterized predicted ...
11-197 1.62e-19

integral membrane protein, PqiA family; This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A. [Unknown function, General]


Pssm-ID: 272933 [Multi-domain]  Cd Length: 403  Bit Score: 85.27  E-value: 1.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   11 CGECHQLNRADGDEHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHAD 90
Cdd:TIGR00155  19 CDMLVALPRIESGQKAACPRCGTTLTVGWDWSLQRPAAYALAALFLMPFSNLFPLLNMNLLGITIDATLLEGIWVMFSEG 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153   91 MFPIAMVVFVASILVPTFKLVGIALLLYSvqRHQPMSARQRILMyrfIEWIGRWSMLDIFVIAILVALVNFGNLASIEAN 170
Cdd:TIGR00155  99 YASTGTMFFLCVQLVPAFCLITILLLWNR--AELPVRLREVLLV---LFQLKTWVMADIYLVGVGVSFVKVMAYASIGVG 173
                         170       180
                  ....*....|....*....|....*..
gi 489198153  171 LGAAAFASVVVLTMLAAVTFDPRLIWD 197
Cdd:TIGR00155 174 SSLLPFCLFCVLTTRAFQCLNRRWLWD 200
PRK15103 PRK15103
membrane integrity-associated transporter subunit PqiA;
28-197 1.92e-08

membrane integrity-associated transporter subunit PqiA;


Pssm-ID: 237910 [Multi-domain]  Cd Length: 419  Bit Score: 53.49  E-value: 1.92e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153  28 CSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFGSGMPATIMEGVVELVHADMFPIAMVVFVASILVPT 107
Cdd:PRK15103  33 CPRCGTTLTVRWDEPRQRPTAYALSALFMLLLANLFPFVNMNVAGITSEITLLEIPGVMFSEDYASLATFFLLFVQLVPA 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489198153 108 FKLVGIALLLYSVqrhqPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGNLASIEANLGAAAFASVVVLTMLAA 187
Cdd:PRK15103 113 FCMVTILLLVNRA----PLPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFVKLMAYGDIGIGSSFIPWCLFCLLQLRAF 188
                        170
                 ....*....|
gi 489198153 188 VTFDPRLIWD 197
Cdd:PRK15103 189 QCVDRRWLWD 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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