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Conserved domains on  [gi|489197376|ref|WP_003106675|]
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MULTISPECIES: EcsC family protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
EcsC super family cl48146
EcsC protein family; Proteins in this family are related to EcsC from B. subtilis. This ...
8-243 5.52e-24

EcsC protein family; Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.


The actual alignment was detected with superfamily member pfam12787:

Pssm-ID: 463705  Cd Length: 245  Bit Score: 96.54  E-value: 5.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376    8 LKQLQAA-KNLLENPGLTAQLTSLLGTPIEyglKKLPRKVNEKLGSVIEGALLKVARSATA---------TLQENASG-- 75
Cdd:pfam12787   4 LREIEKWeKKMLKPPSLLERLSKPVQEKLN---ALIPEKVHEKITKAIEKMVRAVLFGSEYltekkyrkeTLEDLAELsl 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376   76 -------QPANRLHTLGAAVSGGVGGFFGPLAMLVEVPVTTGIIFRSIADIARSEGESIRDMDTLMACIEVFALggkSAS 148
Cdd:pfam12787  81 eeldrlaREKIKKYKKTAAAEGAGTGAGGILLGLADIPLLLGLKLKTLQEIALIYGYDPKTPEERLFILKIFQL---AFS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376  149 DDAsesgyyaVRTALAQQVKAAADFLGKDAGSKKAAPMLLALVRKVAERLGVQYSEKLAAQIVPIVGALGGAAINTVFMN 228
Cdd:pfam12787 158 SGE-------ERKALLEELSHWDEESEQEDLLLQASDWLERLIRTFQQEYRDYIDLKKLLQLIPVIGAVVGAYANYRLID 230
                         250
                  ....*....|....*
gi 489197376  229 HFQAMARGHFVVRRL 243
Cdd:pfam12787 231 KLGETAMNAYRKRRL 245
 
Name Accession Description Interval E-value
EcsC pfam12787
EcsC protein family; Proteins in this family are related to EcsC from B. subtilis. This ...
8-243 5.52e-24

EcsC protein family; Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.


Pssm-ID: 463705  Cd Length: 245  Bit Score: 96.54  E-value: 5.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376    8 LKQLQAA-KNLLENPGLTAQLTSLLGTPIEyglKKLPRKVNEKLGSVIEGALLKVARSATA---------TLQENASG-- 75
Cdd:pfam12787   4 LREIEKWeKKMLKPPSLLERLSKPVQEKLN---ALIPEKVHEKITKAIEKMVRAVLFGSEYltekkyrkeTLEDLAELsl 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376   76 -------QPANRLHTLGAAVSGGVGGFFGPLAMLVEVPVTTGIIFRSIADIARSEGESIRDMDTLMACIEVFALggkSAS 148
Cdd:pfam12787  81 eeldrlaREKIKKYKKTAAAEGAGTGAGGILLGLADIPLLLGLKLKTLQEIALIYGYDPKTPEERLFILKIFQL---AFS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376  149 DDAsesgyyaVRTALAQQVKAAADFLGKDAGSKKAAPMLLALVRKVAERLGVQYSEKLAAQIVPIVGALGGAAINTVFMN 228
Cdd:pfam12787 158 SGE-------ERKALLEELSHWDEESEQEDLLLQASDWLERLIRTFQQEYRDYIDLKKLLQLIPVIGAVVGAYANYRLID 230
                         250
                  ....*....|....*
gi 489197376  229 HFQAMARGHFVVRRL 243
Cdd:pfam12787 231 KLGETAMNAYRKRRL 245
 
Name Accession Description Interval E-value
EcsC pfam12787
EcsC protein family; Proteins in this family are related to EcsC from B. subtilis. This ...
8-243 5.52e-24

EcsC protein family; Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.


Pssm-ID: 463705  Cd Length: 245  Bit Score: 96.54  E-value: 5.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376    8 LKQLQAA-KNLLENPGLTAQLTSLLGTPIEyglKKLPRKVNEKLGSVIEGALLKVARSATA---------TLQENASG-- 75
Cdd:pfam12787   4 LREIEKWeKKMLKPPSLLERLSKPVQEKLN---ALIPEKVHEKITKAIEKMVRAVLFGSEYltekkyrkeTLEDLAELsl 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376   76 -------QPANRLHTLGAAVSGGVGGFFGPLAMLVEVPVTTGIIFRSIADIARSEGESIRDMDTLMACIEVFALggkSAS 148
Cdd:pfam12787  81 eeldrlaREKIKKYKKTAAAEGAGTGAGGILLGLADIPLLLGLKLKTLQEIALIYGYDPKTPEERLFILKIFQL---AFS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197376  149 DDAsesgyyaVRTALAQQVKAAADFLGKDAGSKKAAPMLLALVRKVAERLGVQYSEKLAAQIVPIVGALGGAAINTVFMN 228
Cdd:pfam12787 158 SGE-------ERKALLEELSHWDEESEQEDLLLQASDWLERLIRTFQQEYRDYIDLKKLLQLIPVIGAVVGAYANYRLID 230
                         250
                  ....*....|....*
gi 489197376  229 HFQAMARGHFVVRRL 243
Cdd:pfam12787 231 KLGETAMNAYRKRRL 245
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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