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Conserved domains on  [gi|489196956|ref|WP_003106262|]
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MULTISPECIES: PLP-dependent aminotransferase family protein [Pseudomonas]

Protein Classification

PLP-dependent aminotransferase family protein( domain architecture ID 11439382)

pyridoxal phosphate (PLP)-dependent aminotransferase family protein may catalyze the reversible exchange of an amino group from one molecule with a keto group from another molecule

CATH:  3.40.640.10
Gene Ontology:  GO:0030170
PubMed:  17109392
SCOP:  4000670

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ARO8 COG1167
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ...
1-473 2.98e-164

DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis


:

Pssm-ID: 440781 [Multi-domain]  Cd Length: 471  Bit Score: 472.01  E-value: 2.98e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956   1 MELQLILDGRHDLVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGP 80
Cdd:COG1167    1 MLIRLDRDSSGPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTFVAARL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  81 AGEAPPqradgplrPAARWARIEPQSGLMDQRAPLRYSFAGGTTDKRRFPFDTWRTCVLQALRLQQRSPAFYKETEGDPE 160
Cdd:COG1167   81 PAPAPA--------PRAAAAVAAPALRRLLEAAPGVIDLGSGAPDPDLFPLAALRRALRRALRRLPPALLGYGDPQGLPE 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 161 LRLAISRYLAiNRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGLRVD 240
Cdd:COG1167  153 LREAIARYLA-RRGVPASPDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVDEDGLDLD 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 241 LLPD-----NAKLVYVTPSHQFPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGT 315
Cdd:COG1167  232 ALEAalrrhRPRAVYVTPSHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGRPPPPLAALDAPGRVIYIGS 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 316 FSKTLFPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRALALFIQRGDFARHTRRLQREYAQRRGRLLERLHGDLSP 395
Cdd:COG1167  312 FSKTLAPGLRLGYLVAPGRLIERLARLKRATDLGTSPLTQLALAEFLESGHYDRHLRRLRREYRARRDLLLAALARHLPD 391
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489196956 396 WLEALPAVAGIHLAARCREPLDVLRIARHLRQQGLEVGTLPPFYAETPAQAGFLFGFGCIERDDIDPALDLLRAELRR 473
Cdd:COG1167  392 GLRVTGPPGGLHLWLELPEGVDAEALAAAALARGILVAPGSAFSADGPPRNGLRLGFGAPSEEELEEALRRLAELLRE 469
 
Name Accession Description Interval E-value
ARO8 COG1167
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ...
1-473 2.98e-164

DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 440781 [Multi-domain]  Cd Length: 471  Bit Score: 472.01  E-value: 2.98e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956   1 MELQLILDGRHDLVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGP 80
Cdd:COG1167    1 MLIRLDRDSSGPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTFVAARL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  81 AGEAPPqradgplrPAARWARIEPQSGLMDQRAPLRYSFAGGTTDKRRFPFDTWRTCVLQALRLQQRSPAFYKETEGDPE 160
Cdd:COG1167   81 PAPAPA--------PRAAAAVAAPALRRLLEAAPGVIDLGSGAPDPDLFPLAALRRALRRALRRLPPALLGYGDPQGLPE 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 161 LRLAISRYLAiNRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGLRVD 240
Cdd:COG1167  153 LREAIARYLA-RRGVPASPDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVDEDGLDLD 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 241 LLPD-----NAKLVYVTPSHQFPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGT 315
Cdd:COG1167  232 ALEAalrrhRPRAVYVTPSHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGRPPPPLAALDAPGRVIYIGS 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 316 FSKTLFPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRALALFIQRGDFARHTRRLQREYAQRRGRLLERLHGDLSP 395
Cdd:COG1167  312 FSKTLAPGLRLGYLVAPGRLIERLARLKRATDLGTSPLTQLALAEFLESGHYDRHLRRLRREYRARRDLLLAALARHLPD 391
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489196956 396 WLEALPAVAGIHLAARCREPLDVLRIARHLRQQGLEVGTLPPFYAETPAQAGFLFGFGCIERDDIDPALDLLRAELRR 473
Cdd:COG1167  392 GLRVTGPPGGLHLWLELPEGVDAEALAAAALARGILVAPGSAFSADGPPRNGLRLGFGAPSEEELEEALRRLAELLRE 469
AAT_like cd00609
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
117-469 2.15e-60

Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.


Pssm-ID: 99734 [Multi-domain]  Cd Length: 350  Bit Score: 201.42  E-value: 2.15e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 117 YSFAGGTTDKRRFPFdtwrtcVLQALRLQQRSPAF--YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDL 194
Cdd:cd00609    1 IDLSIGEPDFPPPPE------VLEALAAAALRAGLlgYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 195 LARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGLRVD-------LLPDNAKLVYVTPsHQFPLGMPMSLER 267
Cdd:cd00609   75 LLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLdlelleaAKTPKTKLLYLNN-PNNPTGAVLSEEE 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 268 RLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGTFSKTL-FPELRLGYLL-PPASLREAVLAARKL 345
Cdd:cd00609  154 LEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFgLPGLRIGYLIaPPEELLERLKKLLPY 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 346 VDRHSETLQQRALALFIQRGDfaRHTRRLQREYAQRRGRLLERLHGdlSPWLEALPAVAGIHLAARCREPLDVLRIARHL 425
Cdd:cd00609  234 TTSGPSTLSQAAAAAALDDGE--EHLEELRERYRRRRDALLEALKE--LGPLVVVKPSGGFFLWLDLPEGDDEEFLERLL 309
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 489196956 426 RQQGleVGTLPPFYAETPAQAGFLFGFGCiERDDIDPALDLLRA 469
Cdd:cd00609  310 LEAG--VVVRPGSAFGEGGEGFVRLSFAT-PEEELEEALERLAE 350
PRK15481 PRK15481
transcriptional regulatory protein PtsJ; Provisional
14-390 2.95e-24

transcriptional regulatory protein PtsJ; Provisional


Pssm-ID: 185378 [Multi-domain]  Cd Length: 431  Bit Score: 104.74  E-value: 2.95e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  14 VGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVaRGPagEAPPQRADGPl 93
Cdd:PRK15481   7 ANEIFDSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGTVI-RGS--PSPVALEGGD- 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  94 rpaarwariePQSGLMDqraplrysFAGGTTDKRRFPfdtwrtCVLQALRLQQRSPAFYKETEGDPELRLAISRYLAINR 173
Cdd:PRK15481  83 ----------PGTPLHD--------LAGGNPDPQRLP------DLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDC 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 174 AVQCDWNalmVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGLRVDL----LPDNAKLV 249
Cdd:PRK15481 139 PVAFEID---LTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKleraLAQGARAV 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 250 YVTPSHQFPLGMPMSLERRLQLLDWAQRH-RALIIEDDYdseyrFDGRSLESLRS-LDRNGQV-AYLGTFSKTLFPELRL 326
Cdd:PRK15481 216 ILTPRAHNPTGCSLSARRAAALRNLLARYpQVLVIIDDH-----FALLSSSPYHSvIPQTTQRwALIRSVSKALGPDLRL 290
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489196956 327 GYLLPPAS----LREAVLAARKLVdrhSETLQQRALALfIQRGDFARHTRRLQREYAQRRGRLLERLH 390
Cdd:PRK15481 291 AFVASDSAtsarLRLRLNSGTQWV---SHLLQDLVYAC-LTDPEYQARLAQARLFYAQRRQKLARALQ 354
Aminotran_1_2 pfam00155
Aminotransferase class I and II;
136-389 6.91e-18

Aminotransferase class I and II;


Pssm-ID: 395103 [Multi-domain]  Cd Length: 351  Bit Score: 84.66  E-value: 6.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  136 TCVLQALR--LQQRSPAFYKETEGDPELRLAISRYLAINRAVQCDWN-ALMVTQGAQQGLDLLARVMLDPGDLAVVEEPG 212
Cdd:pfam00155  17 PAVAKAEKdaLAGGTRNLYGPTDGHPELREALAKFLGRSPVLKLDREaAVVFGSGAGANIEALIFLLANPGDAILVPAPT 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  213 YPPARASLLATGAEVRGVP--------VDAEGLRvDLLPDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALII 283
Cdd:pfam00155  97 YASYIRIARLAGGEVVRYPlydsndfhLDFDALE-AALKEKPKVVLHTsPHN--PTGTVATLEELEKLLDLAKEHNILLL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  284 EDDYDSEYRFDGRSLESLRS-LDRNGQVAYLGTFSKTL-FPELRLGYLLppasLREAVLAARKLVDRH---SETLQQRAL 358
Cdd:pfam00155 174 VDEAYAGFVFGSPDAVATRAlLAEGPNLLVVGSFSKAFgLAGWRVGYIL----GNAAVISQLRKLARPfysSTHLQAAAA 249
                         250       260       270
                  ....*....|....*....|....*....|.
gi 489196956  359 ALFIQRGDFARHTRRLQREYAQRRGRLLERL 389
Cdd:pfam00155 250 AALSDPLLVASELEEMRQRIKERRDYLRDGL 280
HTH_GNTR smart00345
helix_turn_helix gluconate operon transcriptional repressor;
17-76 4.87e-14

helix_turn_helix gluconate operon transcriptional repressor;


Pssm-ID: 197669 [Multi-domain]  Cd Length: 60  Bit Score: 66.44  E-value: 4.87e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956    17 LYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:smart00345   1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
tyr_nico_aTase TIGR01265
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal ...
130-358 1.66e-10

tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.


Pssm-ID: 188123  Cd Length: 403  Bit Score: 62.74  E-value: 1.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  130 PFDTWRTC--VLQALRLQQRSPAF--YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDL 205
Cdd:TIGR01265  43 VFGNLRTDpeAEEAVKDALRSGKFngYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGAN 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  206 AVVEEPGYPPARASLLATGAEVR--------GVPVDAEGLRvDLLPDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQ 276
Cdd:TIGR01265 123 ILVPRPGFPLYDTRAAFSGLEVRlydllpekDWEIDLDGLE-SLADEKTVAIVVInPSN--PCGSVFSRDHLQKIAEVAE 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  277 RHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGTFSKTLF-PELRLGYLL---PPASLREAVLAA-RKLVDR--H 349
Cdd:TIGR01265 200 KLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVvPGWRLGWIIihdPHGIFRDTVLQGlKNLLQRilG 279

                  ....*....
gi 489196956  350 SETLQQRAL 358
Cdd:TIGR01265 280 PATIVQGAL 288
 
Name Accession Description Interval E-value
ARO8 COG1167
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ...
1-473 2.98e-164

DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 440781 [Multi-domain]  Cd Length: 471  Bit Score: 472.01  E-value: 2.98e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956   1 MELQLILDGRHDLVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGP 80
Cdd:COG1167    1 MLIRLDRDSSGPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTFVAARL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  81 AGEAPPqradgplrPAARWARIEPQSGLMDQRAPLRYSFAGGTTDKRRFPFDTWRTCVLQALRLQQRSPAFYKETEGDPE 160
Cdd:COG1167   81 PAPAPA--------PRAAAAVAAPALRRLLEAAPGVIDLGSGAPDPDLFPLAALRRALRRALRRLPPALLGYGDPQGLPE 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 161 LRLAISRYLAiNRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGLRVD 240
Cdd:COG1167  153 LREAIARYLA-RRGVPASPDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVDEDGLDLD 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 241 LLPD-----NAKLVYVTPSHQFPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGT 315
Cdd:COG1167  232 ALEAalrrhRPRAVYVTPSHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGRPPPPLAALDAPGRVIYIGS 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 316 FSKTLFPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRALALFIQRGDFARHTRRLQREYAQRRGRLLERLHGDLSP 395
Cdd:COG1167  312 FSKTLAPGLRLGYLVAPGRLIERLARLKRATDLGTSPLTQLALAEFLESGHYDRHLRRLRREYRARRDLLLAALARHLPD 391
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489196956 396 WLEALPAVAGIHLAARCREPLDVLRIARHLRQQGLEVGTLPPFYAETPAQAGFLFGFGCIERDDIDPALDLLRAELRR 473
Cdd:COG1167  392 GLRVTGPPGGLHLWLELPEGVDAEALAAAALARGILVAPGSAFSADGPPRNGLRLGFGAPSEEELEEALRRLAELLRE 469
AAT_like cd00609
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
117-469 2.15e-60

Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.


Pssm-ID: 99734 [Multi-domain]  Cd Length: 350  Bit Score: 201.42  E-value: 2.15e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 117 YSFAGGTTDKRRFPFdtwrtcVLQALRLQQRSPAF--YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDL 194
Cdd:cd00609    1 IDLSIGEPDFPPPPE------VLEALAAAALRAGLlgYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 195 LARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGLRVD-------LLPDNAKLVYVTPsHQFPLGMPMSLER 267
Cdd:cd00609   75 LLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLdlelleaAKTPKTKLLYLNN-PNNPTGAVLSEEE 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 268 RLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGTFSKTL-FPELRLGYLL-PPASLREAVLAARKL 345
Cdd:cd00609  154 LEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFgLPGLRIGYLIaPPEELLERLKKLLPY 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 346 VDRHSETLQQRALALFIQRGDfaRHTRRLQREYAQRRGRLLERLHGdlSPWLEALPAVAGIHLAARCREPLDVLRIARHL 425
Cdd:cd00609  234 TTSGPSTLSQAAAAAALDDGE--EHLEELRERYRRRRDALLEALKE--LGPLVVVKPSGGFFLWLDLPEGDDEEFLERLL 309
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 489196956 426 RQQGleVGTLPPFYAETPAQAGFLFGFGCiERDDIDPALDLLRA 469
Cdd:cd00609  310 LEAG--VVVRPGSAFGEGGEGFVRLSFAT-PEEELEEALERLAE 350
AspB COG0436
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; ...
152-473 6.03e-30

Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; Aspartate/methionine/tyrosine aminotransferase is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


Pssm-ID: 440205 [Multi-domain]  Cd Length: 387  Bit Score: 120.24  E-value: 6.03e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVP 231
Cdd:COG0436   63 YTPSAGIPELREAIAAYYKRRYGVDLDPDEILVTNGAKEALALALLALLNPGDEVLVPDPGYPSYRAAVRLAGGKPVPVP 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 VDAEG---LRVDLLP----DNAKLVYV-TPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDD-YdSEYRFDGRSLESLR 302
Cdd:COG0436  143 LDEENgflPDPEALEaaitPRTKAIVLnSPNN--PTGAVYSREELEALAELAREHDLLVISDEiY-EELVYDGAEHVSIL 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 303 SLDRNGQVA-YLGTFSKTL-FPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRALALFIQRGDfaRHTRRLQREYAQ 380
Cdd:COG0436  220 SLPGLKDRTiVINSFSKSYaMTGWRIGYAVGPPELIAALLKLQSNLTSCAPTPAQYAAAAALEGPQ--DYVEEMRAEYRR 297
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 381 RRGRLLERL--HGdlspwLEALPAVAGIHLAARCREP-LDVLRIARHL-RQQGleVGTLP--PFYAETPaqaGFL-FGFg 453
Cdd:COG0436  298 RRDLLVEGLneIG-----LSVVKPEGAFYLFADVPELgLDSEEFAERLlEEAG--VAVVPgsAFGPAGE---GYVrISY- 366
                        330       340
                 ....*....|....*....|
gi 489196956 454 CIERDDIDPALDLLRAELRR 473
Cdd:COG0436  367 ATSEERLEEALERLARFLER 386
PRK15481 PRK15481
transcriptional regulatory protein PtsJ; Provisional
14-390 2.95e-24

transcriptional regulatory protein PtsJ; Provisional


Pssm-ID: 185378 [Multi-domain]  Cd Length: 431  Bit Score: 104.74  E-value: 2.95e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  14 VGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVaRGPagEAPPQRADGPl 93
Cdd:PRK15481   7 ANEIFDSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGTVI-RGS--PSPVALEGGD- 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  94 rpaarwariePQSGLMDqraplrysFAGGTTDKRRFPfdtwrtCVLQALRLQQRSPAFYKETEGDPELRLAISRYLAINR 173
Cdd:PRK15481  83 ----------PGTPLHD--------LAGGNPDPQRLP------DLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDC 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 174 AVQCDWNalmVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGLRVDL----LPDNAKLV 249
Cdd:PRK15481 139 PVAFEID---LTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKleraLAQGARAV 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 250 YVTPSHQFPLGMPMSLERRLQLLDWAQRH-RALIIEDDYdseyrFDGRSLESLRS-LDRNGQV-AYLGTFSKTLFPELRL 326
Cdd:PRK15481 216 ILTPRAHNPTGCSLSARRAAALRNLLARYpQVLVIIDDH-----FALLSSSPYHSvIPQTTQRwALIRSVSKALGPDLRL 290
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489196956 327 GYLLPPAS----LREAVLAARKLVdrhSETLQQRALALfIQRGDFARHTRRLQREYAQRRGRLLERLH 390
Cdd:PRK15481 291 AFVASDSAtsarLRLRLNSGTQWV---SHLLQDLVYAC-LTDPEYQARLAQARLFYAQRRQKLARALQ 354
WHTH_GntR cd07377
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ...
13-77 1.11e-20

Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.


Pssm-ID: 153418 [Multi-domain]  Cd Length: 66  Bit Score: 85.58  E-value: 1.11e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489196956  13 LVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVA 77
Cdd:cd07377    2 LYEQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFVA 66
YhcF COG1725
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
16-90 1.09e-18

DNA-binding transcriptional regulator YhcF, GntR family [Transcription];


Pssm-ID: 441331 [Multi-domain]  Cd Length: 114  Bit Score: 81.38  E-value: 1.09e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489196956  16 QLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGPAGEAPPQRAD 90
Cdd:COG1725   14 QIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFVAEDARELLEERREE 88
Aminotran_1_2 pfam00155
Aminotransferase class I and II;
136-389 6.91e-18

Aminotransferase class I and II;


Pssm-ID: 395103 [Multi-domain]  Cd Length: 351  Bit Score: 84.66  E-value: 6.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  136 TCVLQALR--LQQRSPAFYKETEGDPELRLAISRYLAINRAVQCDWN-ALMVTQGAQQGLDLLARVMLDPGDLAVVEEPG 212
Cdd:pfam00155  17 PAVAKAEKdaLAGGTRNLYGPTDGHPELREALAKFLGRSPVLKLDREaAVVFGSGAGANIEALIFLLANPGDAILVPAPT 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  213 YPPARASLLATGAEVRGVP--------VDAEGLRvDLLPDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALII 283
Cdd:pfam00155  97 YASYIRIARLAGGEVVRYPlydsndfhLDFDALE-AALKEKPKVVLHTsPHN--PTGTVATLEELEKLLDLAKEHNILLL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  284 EDDYDSEYRFDGRSLESLRS-LDRNGQVAYLGTFSKTL-FPELRLGYLLppasLREAVLAARKLVDRH---SETLQQRAL 358
Cdd:pfam00155 174 VDEAYAGFVFGSPDAVATRAlLAEGPNLLVVGSFSKAFgLAGWRVGYIL----GNAAVISQLRKLARPfysSTHLQAAAA 249
                         250       260       270
                  ....*....|....*....|....*....|.
gi 489196956  359 ALFIQRGDFARHTRRLQREYAQRRGRLLERL 389
Cdd:pfam00155 250 AALSDPLLVASELEEMRQRIKERRDYLRDGL 280
PRK05764 PRK05764
aspartate aminotransferase; Provisional
152-389 1.68e-16

aspartate aminotransferase; Provisional


Pssm-ID: 235596  Cd Length: 393  Bit Score: 80.94  E-value: 1.68e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVP 231
Cdd:PRK05764  64 YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVP 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 VDAE-GLRVDL------LPDNAK-LVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDD-YDsEYRFDGRSLESLR 302
Cdd:PRK05764 144 TGEEnGFKLTVeqleaaITPKTKaLILNSPSN--PTGAVYSPEELEAIADVAVEHDIWVLSDEiYE-KLVYDGAEFTSIA 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 303 SL-----DR----NGqvaylgtFSKTlF--PELRLGYLLPPASLREavlAARKLvdrHSETL-------QQRALALFiqR 364
Cdd:PRK05764 221 SLspelrDRtitvNG-------FSKA-YamTGWRLGYAAGPKELIK---AMSKL---QSHSTsnptsiaQYAAVAAL--N 284
                        250       260
                 ....*....|....*....|....*
gi 489196956 365 GDFArHTRRLQREYAQRRGRLLERL 389
Cdd:PRK05764 285 GPQD-EVEEMRQAFEERRDLMVDGL 308
PRK06108 PRK06108
pyridoxal phosphate-dependent aminotransferase;
151-473 2.20e-15

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 180404  Cd Length: 382  Bit Score: 77.68  E-value: 2.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 151 FYKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGV 230
Cdd:PRK06108  56 FYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCV 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 231 PVD--AEGLRVDL-------LPDNAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFD--GRSLE 299
Cdd:PRK06108 136 PLDfgGGGWTLDLdrllaaiTPRTRALFINSPNN--PTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYApgGRAPS 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 300 SLRSLDRNGQVAYLGTFSKT-LFPELRLGYLLPPASLrEAVLAarKLVD---RHSETLQQRALALFIQRGDfaRHTRRLQ 375
Cdd:PRK06108 214 FLDIAEPDDRIIFVNSFSKNwAMTGWRLGWLVAPPAL-GQVLE--KLIEyntSCVAQFVQRAAVAALDEGE--DFVAELV 288
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 376 REYAQRRGRLLERLHGdlSPWLEALPAVAGIHLAARCREPLDVLRIARHL-RQQGLevgTLPPFYAETPAQAGFL-FGFG 453
Cdd:PRK06108 289 ARLRRSRDHLVDALRA--LPGVEVAKPDGAMYAFFRIPGVTDSLALAKRLvDEAGL---GLAPGTAFGPGGEGFLrWCFA 363
                        330       340
                 ....*....|....*....|
gi 489196956 454 CiERDDIDPALDLLRAELRR 473
Cdd:PRK06108 364 R-DPARLDEAVERLRRFLAR 382
FadR COG2186
DNA-binding transcriptional regulator, FadR family [Transcription];
10-84 5.04e-15

DNA-binding transcriptional regulator, FadR family [Transcription];


Pssm-ID: 441789 [Multi-domain]  Cd Length: 232  Bit Score: 74.20  E-value: 5.04e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489196956  10 RHDLVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGPAGEA 84
Cdd:COG2186    5 RRSLAEQVAEQLRELILSGELKPGDRLPSERELAEQLGVSRTTVREALRALEALGLVEVRQGGGTFVREPSPWAL 79
GntR pfam00392
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ...
13-76 2.10e-14

Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.


Pssm-ID: 306822 [Multi-domain]  Cd Length: 64  Bit Score: 67.64  E-value: 2.10e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196956   13 LVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:pfam00392   1 LYEQVYARLREDILSGRLRPGDKLPSERELAAEFGVSRTTVREALRRLEAEGLVERRQGRGTFV 64
HTH_GNTR smart00345
helix_turn_helix gluconate operon transcriptional repressor;
17-76 4.87e-14

helix_turn_helix gluconate operon transcriptional repressor;


Pssm-ID: 197669 [Multi-domain]  Cd Length: 60  Bit Score: 66.44  E-value: 4.87e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956    17 LYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:smart00345   1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
MngR COG2188
DNA-binding transcriptional regulator, GntR family [Transcription];
16-80 1.29e-13

DNA-binding transcriptional regulator, GntR family [Transcription];


Pssm-ID: 441791 [Multi-domain]  Cd Length: 238  Bit Score: 70.28  E-value: 1.29e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489196956  16 QLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGP 80
Cdd:COG2188    9 QIADALRERIESGELPPGDRLPSERELAEEFGVSRMTVRKALDELVEEGLLERRQGRGTFVAEPK 73
HisC COG0079
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid ...
138-429 8.04e-13

Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid transport and metabolism]; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439849 [Multi-domain]  Cd Length: 341  Bit Score: 69.39  E-value: 8.04e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 138 VLQALRLQQRSPAFYKETEGDpELRLAISRYLAINRAvqcdwnALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPAR 217
Cdd:COG0079   31 VLEAIAAALDALNRYPDPDAT-ALREALAEYYGVPPE------QVLVGNGSDELIQLLARAFLGPGDEVLVPEPTFSEYP 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 218 ASLLATGAEVRGVPVDAEgLRVDL------LPDNAKLVYVT----PShqfplGMPMSLERRLQLLDWAQRHRALIIeddy 287
Cdd:COG0079  104 IAARAAGAEVVEVPLDED-FSLDLdallaaITERTDLVFLCnpnnPT-----GTLLPREELEALLEALPADGLVVV---- 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 288 D---SEYRFDGRSLESLrsLDRNGQVAYLGTFSKTL-FPELRLGYLLPPASLREAvLAARKL---VDRhsetLQQRALAL 360
Cdd:COG0079  174 DeayAEFVPEEDSALPL--LARYPNLVVLRTFSKAYgLAGLRLGYAIASPELIAA-LRRVRGpwnVNS----LAQAAALA 246
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489196956 361 FIQRGDFARHTRrlqREYAQRRGRLLERL--HGdlspwLEALPAVAGIHLaarCREPLDVLRIARHLRQQG 429
Cdd:COG0079  247 ALEDRAYLEETR---ARLRAERERLAAALraLG-----LTVYPSQANFVL---VRVPEDAAELFEALLERG 306
PRK07682 PRK07682
aminotransferase;
152-382 1.70e-12

aminotransferase;


Pssm-ID: 181082 [Multi-domain]  Cd Length: 378  Bit Score: 68.61  E-value: 1.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNA-LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYpPARASL--LATGAEV- 227
Cdd:PRK07682  53 YTANAGLLELRQEIAKYLKKRFAVSYDPNDeIIVTVGASQALDVAMRAIINPGDEVLIVEPSF-VSYAPLvtLAGGVPVp 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 228 ------RGVPVDAEGLRVDLLPDNAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGR--SLE 299
Cdd:PRK07682 132 vattleNEFKVQPAQIEAAITAKTKAILLCSPNN--PTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAytSFA 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 300 SLRSLDRngQVAYLGTFSKTL-FPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRALALFIQRGdfARHTRRLQREY 378
Cdd:PRK07682 210 SIKGMRE--RTILISGFSKGFaMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAG--NDDVIRMRDSY 285

                 ....
gi 489196956 379 AQRR 382
Cdd:PRK07682 286 RKRR 289
PRK07681 PRK07681
LL-diaminopimelate aminotransferase;
187-389 3.05e-12

LL-diaminopimelate aminotransferase;


Pssm-ID: 181081  Cd Length: 399  Bit Score: 67.91  E-value: 3.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 187 GAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGlrvDLLPD----------NAKLVYVTpshq 256
Cdd:PRK07681 101 GSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKEN---DFLPDlelipeeiadKAKMMILN---- 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 257 FPlGMP---MSLERRL-QLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAY-LGTFSKTL-FPELRLGYLL 330
Cdd:PRK07681 174 FP-GNPvpaMAHEDFFkEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVeINSLSKSYsLAGSRIGYMI 252
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 331 PPASLREAVLAARKLVDRHS-ETLQQRALALFIQRGDFARHTRRLqreYAQRRGRLLERL 389
Cdd:PRK07681 253 GNEEIVRALTQFKSNTDYGVfLPIQKAACAALRNGAAFCEKNRGI---YQERRDTLVDGF 309
PRK08363 PRK08363
alanine aminotransferase; Validated
151-389 1.22e-11

alanine aminotransferase; Validated


Pssm-ID: 181402  Cd Length: 398  Bit Score: 66.37  E-value: 1.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 151 FYKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPaRASL--LATGAEVR 228
Cdd:PRK08363  65 YYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPP-YTGLvkFYGGVPVE 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 229 GVPVDAEGLRVDL------LPDNAKLVYVTPSHQfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLeSLR 302
Cdd:PRK08363 144 YRTIEEEGWQPDIddirkkITEKTKAIAVINPNN-PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHV-SPG 221
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 303 SLDRNGQVAYLGTFSKTLFPE-LRLGY--LLPP----ASLREAVLAARKLVDRHSETLQQRALALFIQRGDfarHTRRLQ 375
Cdd:PRK08363 222 SLTKDVPVIVMNGLSKVYFATgWRLGYiyFVDPegklAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMD---YLEEYM 298
                        250
                 ....*....|....
gi 489196956 376 REYAQRRGRLLERL 389
Cdd:PRK08363 299 KKLKERRDYIYKRL 312
PRK09276 PRK09276
LL-diaminopimelate aminotransferase; Provisional
137-390 1.28e-10

LL-diaminopimelate aminotransferase; Provisional


Pssm-ID: 181749  Cd Length: 385  Bit Score: 63.01  E-value: 1.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 137 CVLQALRLQQRSPAF--YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQ-GAQQGLDLLARVMLDPGDLAVVEEPGY 213
Cdd:PRK09276  48 HIIEAMCKAVEDPENhqYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLiGSKEGIAHIPLAFVNPGDVVLVPDPGY 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 214 PPARASLLATGAEVRGVPVDAEGlrvDLLPD----------NAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALI 282
Cdd:PRK09276 128 PVYKIGTIFAGGEPYFMPLKEEN---GFLPDldaipedvakKAKLMFINyPNN--PTGAVADLEFFEEVVDFAKKYDIIV 202
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 283 IEDDYDSEYRFDGRSLESLRSLDRNGQVAY-LGTFSKTL-FPELRLGYLLPPASLREAVLAARKLVDrhS---ETLQQRA 357
Cdd:PRK09276 203 CHDAAYSEIAYDGYKPPSFLEVPGAKDVGIeFHSLSKTYnMTGWRIGFAVGNADLIAGLGKVKSNVD--SgvfQAIQEAG 280
                        250       260       270
                 ....*....|....*....|....*....|...
gi 489196956 358 LALFIQRGDFARHTRRLqreYAQRRGRLLERLH 390
Cdd:PRK09276 281 IAALNGPQEVVEELRKI---YQERRDILVEGLR 310
tyr_nico_aTase TIGR01265
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal ...
130-358 1.66e-10

tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.


Pssm-ID: 188123  Cd Length: 403  Bit Score: 62.74  E-value: 1.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  130 PFDTWRTC--VLQALRLQQRSPAF--YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDL 205
Cdd:TIGR01265  43 VFGNLRTDpeAEEAVKDALRSGKFngYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGAN 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  206 AVVEEPGYPPARASLLATGAEVR--------GVPVDAEGLRvDLLPDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQ 276
Cdd:TIGR01265 123 ILVPRPGFPLYDTRAAFSGLEVRlydllpekDWEIDLDGLE-SLADEKTVAIVVInPSN--PCGSVFSRDHLQKIAEVAE 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  277 RHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGTFSKTLF-PELRLGYLL---PPASLREAVLAA-RKLVDR--H 349
Cdd:TIGR01265 200 KLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVvPGWRLGWIIihdPHGIFRDTVLQGlKNLLQRilG 279

                  ....*....
gi 489196956  350 SETLQQRAL 358
Cdd:TIGR01265 280 PATIVQGAL 288
PRK06225 PRK06225
pyridoxal phosphate-dependent aminotransferase;
152-357 2.04e-10

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 235749 [Multi-domain]  Cd Length: 380  Bit Score: 62.46  E-value: 2.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAInravqcDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVP 231
Cdd:PRK06225  62 YPPPEGFPELRELILKDLGL------DDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVP 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 VDAEGLRVDLLPD--------NAKLVY-VTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIeddYDSEYR-F-DGRSLES 300
Cdd:PRK06225 136 IYSEECNYKLTPElvkenmdeNTRLIYlIDPLN--PLGSSYTEEEIKEFAEIARDNDAFLL---HDCTYRdFaREHTLAA 210
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489196956 301 LRSLDRNgQVAYlgTFSKTL-FPELRLGYLLPPASLREAVlAARKLVDRHSETLQQRA 357
Cdd:PRK06225 211 EYAPEHT-VTSY--SFSKIFgMAGLRIGAVVATPDLIEVV-KSIVINDLGTNVIAQEA 264
PRK10421 PRK10421
DNA-binding transcriptional repressor LldR; Provisional
16-76 3.10e-10

DNA-binding transcriptional repressor LldR; Provisional


Pssm-ID: 236690 [Multi-domain]  Cd Length: 253  Bit Score: 60.55  E-value: 3.10e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489196956  16 QLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:PRK10421   6 EVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRGGGTFI 66
GntR COG1802
DNA-binding transcriptional regulator, GntR family [Transcription];
10-78 6.39e-10

DNA-binding transcriptional regulator, GntR family [Transcription];


Pssm-ID: 441407 [Multi-domain]  Cd Length: 222  Bit Score: 59.17  E-value: 6.39e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489196956  10 RHDLVGQLYRQLRDAILHGRLATGDRLPATRyLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVAR 78
Cdd:COG1802    9 RESLAEQVYEALREAILSGELPPGERLSEAE-LAERLGVSRTPVREALRRLEAEGLVEIRPNRGARVAP 76
PRK06348 PRK06348
pyridoxal phosphate-dependent aminotransferase;
152-408 8.61e-10

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 180537  Cd Length: 384  Bit Score: 60.50  E-value: 8.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLAtgaeVRGVP 231
Cdd:PRK06348  62 YTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEM----VGGKP 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 V-----DAEGLRVD------LLPDNAKLVYV-TPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDD-YDS-EYRFDGRS 297
Cdd:PRK06348 138 IiletyEEDGFQINvkkleaLITSKTKAIILnSPNN--PTGAVFSKETLEEIAKIAIEYDLFIISDEvYDGfSFYEDFVP 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 298 LESLRSLDRNgqVAYLGTFSKTL-FPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRA--LALfiqrgdfaRHTRRL 374
Cdd:PRK06348 216 MATLAGMPER--TITFGSFSKDFaMTGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAaiYAL--------KHRDTI 285
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489196956 375 Q----REYAQRRGRLLERLHGdlSPWLEALPAVAGIHL 408
Cdd:PRK06348 286 VplikEEFQKRLEYAYKRIES--IPNLSLHPPKGSIYA 321
tyr_amTase_E TIGR01264
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found ...
152-358 1.46e-09

tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. [Energy metabolism, Amino acids and amines]


Pssm-ID: 273529 [Multi-domain]  Cd Length: 401  Bit Score: 59.80  E-value: 1.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  152 YKETEGDPELRLAISRYLAINRAVqCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPparasLLATGAEVRGVP 231
Cdd:TIGR01264  69 YAPTVGALSAREAIASYYHNPDGP-IEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFP-----LYETLAESMGIE 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  232 VDAEGLRVD------------LLPDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSL 298
Cdd:TIGR01264 143 VKLYNLLPDksweidlkqlesLIDEKTAALIVNnPSN--PCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATF 220
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489196956  299 ESLRSLDRNGQVAYLGTFSKT-LFPELRLGYLL---PPASLREAVLAARKLVDR--HSETLQQRAL 358
Cdd:TIGR01264 221 EPLASLSSTVPILSCGGLAKRwLVPGWRLGWIIihdRRGILRDIRDGLVKLSQRilGPCTIVQGAL 286
C_P_lyase_phnF TIGR02325
phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for ...
17-102 5.48e-09

phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. [Transport and binding proteins, Anions, Regulatory functions, DNA interactions]


Pssm-ID: 131378 [Multi-domain]  Cd Length: 238  Bit Score: 56.72  E-value: 5.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956   17 LYRQ----LRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARgpageappQRADGP 92
Cdd:TIGR02325   9 LWRQiadkIEQEIAAGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGRGTFVAA--------RRIDYP 80
                          90
                  ....*....|
gi 489196956   93 LRPAARWARI 102
Cdd:TIGR02325  81 LSARTRFSQN 90
pdhR PRK09464
pyruvate dehydrogenase complex transcriptional repressor PdhR;
20-76 7.75e-09

pyruvate dehydrogenase complex transcriptional repressor PdhR;


Pssm-ID: 181879 [Multi-domain]  Cd Length: 254  Bit Score: 56.18  E-value: 7.75e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489196956  20 QLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:PRK09464  18 QLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFV 74
PRK11523 PRK11523
transcriptional regulator ExuR;
13-76 1.05e-08

transcriptional regulator ExuR;


Pssm-ID: 183176 [Multi-domain]  Cd Length: 253  Bit Score: 56.01  E-value: 1.05e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196956  13 LVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:PRK11523   9 LYQQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHV 72
PRK08960 PRK08960
pyridoxal phosphate-dependent aminotransferase;
151-411 2.11e-08

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 181595  Cd Length: 387  Bit Score: 56.22  E-value: 2.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 151 FYKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGV 230
Cdd:PRK08960  64 RYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLV 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 231 PVDAEG---LRVDLL-----PDNAKLVYVTPSHqfPLGMPMSLERRLQLLDW-AQRHRALIIEDDYDS-EYRFDGRSles 300
Cdd:PRK08960 144 PVGPDSryqLTPALVerhwnADTVGALVASPAN--PTGTLLSRDELAALSQAlRARGGHLVVDEIYHGlTYGVDAAS--- 218
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 301 lrSLDRNGQVAYLGTFSKTL-FPELRLGYLL-PPASLREAVLAARKLVDRHSETLQQRALALFIQRGDFARHTRRlqREY 378
Cdd:PRK08960 219 --VLEVDDDAFVLNSFSKYFgMTGWRLGWLVaPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARR--AEF 294
                        250       260       270
                 ....*....|....*....|....*....|...
gi 489196956 379 AQRRGRLLerlhgdlsPWLEALpavaGIHLAAR 411
Cdd:PRK08960 295 ARRRDFLL--------PALREL----GFGIAVE 315
PRK08175 PRK08175
aminotransferase; Validated
152-390 1.66e-07

aminotransferase; Validated


Pssm-ID: 181268 [Multi-domain]  Cd Length: 395  Bit Score: 53.18  E-value: 1.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNA-LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGV 230
Cdd:PRK08175  63 YSTSRGIPRLRRAISRWYQDRYDVDIDPESeAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSV 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 231 P----VD--AEGLRV--DLLPDNAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLR 302
Cdd:PRK08175 143 PlvegVDffNELERAirESYPKPKMMILGFPSN--PTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIM 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 303 SLDRNGQVAY-LGTFSKTL-FPELRLGYLLPPASLREAVLAARKLVDRHSET-LQQRALALFIQRGDFARHTRRLqreYA 379
Cdd:PRK08175 221 QVPGAKDVAVeFFTLSKSYnMAGWRIGFMVGNPELVSALARIKSYHDYGTFTpLQVAAIAALEGDQQCVRDIAEQ---YK 297
                        250
                 ....*....|.
gi 489196956 380 QRRGRLLERLH 390
Cdd:PRK08175 298 RRRDVLVKGLH 308
PLN02656 PLN02656
tyrosine transaminase
152-348 2.30e-07

tyrosine transaminase


Pssm-ID: 178262 [Multi-domain]  Cd Length: 409  Bit Score: 53.00  E-value: 2.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVP 231
Cdd:PLN02656  69 YAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVD 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 VDAE-GLRVDL-----LPD--NAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRS 303
Cdd:PLN02656 149 LLPEkGWEVDLdaveaLADqnTVALVIINPGN--PCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGV 226
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489196956 304 LDRNGQVAYLGTFSKT-LFPELRLGYLL---PPASLREAvlaarKLVDR 348
Cdd:PLN02656 227 FGSIVPVLTLGSLSKRwIVPGWRLGWFVttdPSGSFRDP-----KIVER 270
PRK06107 PRK06107
aspartate transaminase;
94-412 7.92e-07

aspartate transaminase;


Pssm-ID: 180403  Cd Length: 402  Bit Score: 51.27  E-value: 7.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  94 RPAARWARIEPQ-SGLMDQRA-PLRYS------FAGGTTDkrrfpFDT---WRTCVLQALRlqqRSPAFYKETEGDPELR 162
Cdd:PRK06107   5 VPAARVSRIKPSpSTAAAARArELRAAgrsivdLTVGEPD-----FDTpdhIKQAAVAAIE---RGETKYTLVNGTPALR 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 163 LAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEP---GYPPArasLLATGA--------EVRGVP 231
Cdd:PRK06107  77 KAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPywvSYPDM---VLANDGtpvivacpEEQGFK 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 VDAEGLRVDLLPDNAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHR-ALIIEDDYDSEYRFDGRSLESL--------- 301
Cdd:PRK06107 154 LTPEALEAAITPRTRWLILNAPSN--PTGAVYSRAELRALADVLLRHPhVLVLTDDIYDHIRFDDEPTPHLlaaapelrd 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 302 RSLDRNGqvaylgtFSKTL-FPELRLGYLLPPASLreaVLAARKLVDRHSE---TLQQRALALFIQrGD--FARHTRRLq 375
Cdd:PRK06107 232 RVLVTNG-------VSKTYaMTGWRIGYAAGPADL---IAAINKLQSQSSScpsSISQAAAAAALN-GDqsFVTESVAV- 299
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 489196956 376 reYAQRRGRLLERLHGdlSPWLEALPAVAGIHLAARC 412
Cdd:PRK06107 300 --YKQRRDYALALLNA--IPGLSCLVPDGAFYLYVNC 332
PRK08636 PRK08636
LL-diaminopimelate aminotransferase;
152-319 9.58e-07

LL-diaminopimelate aminotransferase;


Pssm-ID: 236316  Cd Length: 403  Bit Score: 50.86  E-value: 9.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNA-LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGV 230
Cdd:PRK08636  67 YSVSKGIYKLRLAICNWYKRKYNVDLDPETeVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKM 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 231 P--------VDAEGLRVDL-----------------LPDNAKLVYVTPSHqfplgmpmsLERrlqLLDWAQRHRALIIED 285
Cdd:PRK08636 147 PleynedfeLDEDQFFENLekalresspkpkyvvvnFPHNPTTATVEKSF---------YER---LVALAKKERFYIISD 214
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 489196956 286 DYDSEYRFDGRSLESLRSLDRNGQVAYLG-TFSKT 319
Cdd:PRK08636 215 IAYADITFDGYKTPSILEVEGAKDVAVESyTLSKS 249
PRK10225 PRK10225
Uxu operon transcriptional regulator;
21-92 1.01e-06

Uxu operon transcriptional regulator;


Pssm-ID: 182318 [Multi-domain]  Cd Length: 257  Bit Score: 50.02  E-value: 1.01e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489196956  21 LRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGPAgeapPQRADGP 92
Cdd:PRK10225  18 IRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSG----SHNTDSP 85
PRK05942 PRK05942
aspartate aminotransferase; Provisional
148-301 1.18e-06

aspartate aminotransferase; Provisional


Pssm-ID: 180317  Cd Length: 394  Bit Score: 50.49  E-value: 1.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 148 SPAF--YKETEGDPELRLAISRYLAINRAVQCDWN--ALMVTqGAQQGLDLLARVMLDPGDLAVVEEPGYPPA-RASLLA 222
Cdd:PRK05942  63 DPQNhgYPPFEGTASFRQAITDWYHRRYGVELDPDseALPLL-GSKEGLTHLALAYVNPGDVVLVPSPAYPAHfRGPLIA 141
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 223 tGAEVRGVPVDAE-GLRVDL--LPDN----AKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFD 294
Cdd:PRK05942 142 -GAQIYPIILKPEnDWLIDLssIPEEvaqqAKILYFNyPSN--PTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFD 218

                 ....*..
gi 489196956 295 GRSLESL 301
Cdd:PRK05942 219 GYQPTSL 225
PRK07777 PRK07777
putative succinyldiaminopimelate transaminase DapC;
157-389 2.08e-06

putative succinyldiaminopimelate transaminase DapC;


Pssm-ID: 236095 [Multi-domain]  Cd Length: 387  Bit Score: 49.65  E-value: 2.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 157 GDPELRLAISRYLAINRAVQCDWNA-LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVP---- 231
Cdd:PRK07777  62 GIPELRAAIAAQRRRRYGLEYDPDTeVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPlvpd 141
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 -----VDAEGLRVDLLPDNAKLVYVTPsHQfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESLRSL-- 304
Cdd:PRK07777 142 grgfaLDLDALRAAVTPRTRALIVNSP-HN-PTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLpg 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 305 --DRNGQVAYLG-TFSKTLFpelRLGYLLPPASLREAVLAARKLVDRHSETLQQRALALFIQRGD--FARHTRRLQReya 379
Cdd:PRK07777 220 mrERTVTISSAAkTFNVTGW---KIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDawVAALRDSLQA--- 293
                        250
                 ....*....|
gi 489196956 380 qRRGRLLERL 389
Cdd:PRK07777 294 -KRDRLAAGL 302
PRK09764 PRK09764
GntR family transcriptional regulator;
17-76 3.80e-06

GntR family transcriptional regulator;


Pssm-ID: 182065 [Multi-domain]  Cd Length: 240  Bit Score: 47.90  E-value: 3.80e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196956  17 LYRQ----LRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:PRK09764   6 LYRQiadrIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYV 69
PRK07568 PRK07568
pyridoxal phosphate-dependent aminotransferase;
137-296 3.86e-06

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 181036  Cd Length: 397  Bit Score: 49.08  E-value: 3.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 137 CVLQALRLQQRSPAFYKETEGDPELRLAISRYLA-INRAVQCDwnALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPP 215
Cdd:PRK07568  47 VFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKkWGIDVEPD--EILITNGGSEAILFAMMAICDPGDEILVPEPFYAN 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 216 ARASLLATGAEVRGVPVDAE-GLRvdlLPDNAKLV-YVT----------PSHqfPLGMPMSLERRLQLLDWAQRHRALII 283
Cdd:PRK07568 125 YNGFATSAGVKIVPVTTKIEeGFH---LPSKEEIEkLITpktkailisnPGN--PTGVVYTKEELEMLAEIAKKHDLFLI 199
                        170
                 ....*....|...
gi 489196956 284 EDDYDSEYRFDGR 296
Cdd:PRK07568 200 SDEVYREFVYDGL 212
PRK07366 PRK07366
LL-diaminopimelate aminotransferase;
187-390 4.18e-06

LL-diaminopimelate aminotransferase;


Pssm-ID: 180947  Cd Length: 388  Bit Score: 48.91  E-value: 4.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 187 GAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVPVDAEGlrvDLLPD----------NAKLVYVTPSHQ 256
Cdd:PRK07366 100 GSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAEN---DFLPVfadiptevlaQARLMVLSYPHN 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 257 fPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDG-RSLESLRSLDRNGQVAY-LGTFSKTL-FPELRLGYLLPPA 333
Cdd:PRK07366 177 -PTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGeVEPPSILQADPEKSVSIeFFTLSKSYnMGGFRIGFAIGNA 255
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489196956 334 SLREAVLAARKLVDRHsetlQQR-----ALALFIQRGDFARHTRRLqreYAQRRGRLLERLH 390
Cdd:PRK07366 256 QLIQALRQVKAVVDFN----QYRgilngAIAALTGPQATVQQTVQI---FRQRRDAFINALH 310
PRK09148 PRK09148
LL-diaminopimelate aminotransferase;
152-295 5.29e-06

LL-diaminopimelate aminotransferase;


Pssm-ID: 181674 [Multi-domain]  Cd Length: 405  Bit Score: 48.52  E-value: 5.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNA-LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGV 230
Cdd:PRK09148  64 YSASKGIPGLRRAQAAYYARRFGVKLNPDTqVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSV 143
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489196956 231 PV--DAEGLR------VDLLPDNAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDG 295
Cdd:PRK09148 144 PAepDEEFFPaleravRHSIPKPIALIVNYPSN--PTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG 214
PRK08361 PRK08361
aspartate aminotransferase; Provisional
131-389 8.22e-06

aspartate aminotransferase; Provisional


Pssm-ID: 236248 [Multi-domain]  Cd Length: 391  Bit Score: 47.95  E-value: 8.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 131 FDTWRTCVLQALRLQQRSPAFYKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEE 210
Cdd:PRK08361  45 FDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPD 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 211 PGYPPARASLLATGAEVRGVPVDAEGlrvDLLPDNAKLV-YVTPSHQF--------PLGMPMSLERRLQLLDWAQRHRAL 281
Cdd:PRK08361 125 PAFVCYVEDAKIAEAKPIRIPLREEN---EFQPDPDELLeLITKRTRMivinypnnPTGATLDKEVAKAIADIAEDYNIY 201
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 282 IIEDDYDSEYRFDG-RSLESLRSLDRNGQVAylGTFSKTL-FPELRLGYLLPPASLreavlaARKLVDRHSETLQQraLA 359
Cdd:PRK08361 202 ILSDEPYEHFLYEGaKHYPMIKYAPDNTILA--NSFSKTFaMTGWRLGFVIAPEQV------IKDMIKLHAYIIGN--VA 271
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489196956 360 LFIQRGDFA--------RHTRRLQREYAQRRGRLLERL 389
Cdd:PRK08361 272 SFVQIAGIEalrskeswKAVEEMRKEYNERRKLVLKRL 309
PTZ00433 PTZ00433
tyrosine aminotransferase; Provisional
152-349 9.87e-06

tyrosine aminotransferase; Provisional


Pssm-ID: 185613  Cd Length: 412  Bit Score: 47.86  E-value: 9.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAIN------RAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGA 225
Cdd:PTZ00433  71 YPPTVGSPEAREAVATYWRNSfvhkesLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGI 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 226 EVRGVPVDAEG--------LRvDLLPDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGR 296
Cdd:PTZ00433 151 EMRFYNCRPEKdweadldeIR-RLVDDRTKALIMTnPSN--PCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA 227
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489196956 297 SLESLRSLDRNGQVAYLGTFSKTLF-PELRLGYLLppaslreavlaarkLVDRH 349
Cdd:PTZ00433 228 TFTSVADFDTTVPRVILGGTAKNLVvPGWRLGWLL--------------LVDPH 267
C_S_lyase_PatB TIGR04350
putative C-S lyase; Members of this subfamily are probable C-S lyases from a family of ...
137-286 2.09e-05

putative C-S lyase; Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A).


Pssm-ID: 275146  Cd Length: 384  Bit Score: 46.54  E-value: 2.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  137 CVLQALRLQQRSPAF-YkeTEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPP 215
Cdd:TIGR04350  42 AVLEALKQRLEHPVFgY--TLPPDSLYAAVINWLAQRHGWQIDPEDIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPP 119
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489196956  216 ARASLLATGAEVRGVPV--DAEGLRVDL------LPDNAKLVYVTPSHQfPLGMPMSLERRLQLLDWAQRHRALIIEDD 286
Cdd:TIGR04350 120 FLSAVKSNGRELVLNPLklDEGRYRFDLedledaITEKARLLLLCSPHN-PVGRVWTREELTRLAELCLRHNVVVVSDE 197
PRK06290 PRK06290
LL-diaminopimelate aminotransferase;
157-318 2.40e-05

LL-diaminopimelate aminotransferase;


Pssm-ID: 235772  Cd Length: 410  Bit Score: 46.57  E-value: 2.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 157 GDPELRLAISRYLAINRAVQcDWNAlmVTQ-----GAQQGLDLLARVMLDPGDLAVVEEPGYPparasLLAT-----GAE 226
Cdd:PRK06290  82 GIQEFKEAAARYMEKVFGVK-DIDP--VTEvihsiGSKPALAMLPSCFINPGDVTLMTVPGYP-----VTGThtkyyGGE 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 227 VRGVPVDAEGlrvDLLPD----------NAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDG 295
Cdd:PRK06290 154 VYNLPLLEEN---NFLPDldsipkdikeKAKLLYLNyPNN--PTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG 228
                        170       180
                 ....*....|....*....|....
gi 489196956 296 RSLeSLRSLDRNGQVAY-LGTFSK 318
Cdd:PRK06290 229 KPL-SFLSVPGAKEVGVeIHSLSK 251
PLN00175 PLN00175
aminotransferase family protein; Provisional
152-389 3.71e-05

aminotransferase family protein; Provisional


Pssm-ID: 215089 [Multi-domain]  Cd Length: 413  Bit Score: 46.01  E-value: 3.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNA-LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGV 230
Cdd:PLN00175  87 YARGFGVPELNSAIAERFKKDTGLVVDPEKeVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTV 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 231 PVDAEGLRVDL------LPDNAKLVYVTPSHQfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGR--SLESLR 302
Cdd:PLN00175 167 TLRPPDFAVPEdelkaaFTSKTRAILINTPHN-PTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDhiSMASLP 245
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 303 SL-DRNGQVAYLG-TFSKTLFpelRLGYLLPPASLREAVLAARKLVDRHSETLQQRALALFIQRGDfaRHTRRLQREYAQ 380
Cdd:PLN00175 246 GMyERTVTMNSLGkTFSLTGW---KIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPE--SYYEELKRDYSA 320

                 ....*....
gi 489196956 381 RRGRLLERL 389
Cdd:PLN00175 321 KKDILVEGL 329
PRK05957 PRK05957
pyridoxal phosphate-dependent aminotransferase;
152-339 4.43e-05

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 235654  Cd Length: 389  Bit Score: 45.45  E-value: 4.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAI-NRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGV 230
Cdd:PRK05957  61 YQAVQGIPPLLEAITQKLQQdNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILV 140
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 231 PVDAE-GLRVDLL-----PDNAKLVYVTPSHqfPLGM--PMSLERRLQLLdwAQRHRALIIEDDYDSEYRFDGRSLESLR 302
Cdd:PRK05957 141 PTDDNyQLQPEAIeqaitPKTRAIVTISPNN--PTGVvyPEALLRAVNQI--CAEHGIYHISDEAYEYFTYDGVKHFSPG 216
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 489196956 303 SL-DRNGQVAYLGTFSKTL-FPELRLGYLLPPASLREAV 339
Cdd:PRK05957 217 SIpGSGNHTISLYSLSKAYgFASWRIGYMVIPIHLLEAI 255
PRK07309 PRK07309
pyridoxal phosphate-dependent aminotransferase;
152-389 7.87e-05

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 235985  Cd Length: 391  Bit Score: 44.71  E-value: 7.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLaiNRAVQCDWNA---LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVr 228
Cdd:PRK07309  63 YTGMAGLLELRQAAADFV--KEKYNLDYAPeneILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEI- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 229 gVPVD---------AEGLRVDLL--PDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGR 296
Cdd:PRK07309 140 -VEIDttendfvltPEMLEKAILeqGDKLKAVILNyPAN--PTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 297 SLESLRSLDRNgQVAYLGTFSKT-LFPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRAL--ALFIQRGDfarhTRR 373
Cdd:PRK07309 217 PHVSIAEYLPD-QTILINGLSKShAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAveALTNGKDD----ALP 291
                        250
                 ....*....|....*.
gi 489196956 374 LQREYAQRRGRLLERL 389
Cdd:PRK07309 292 MKKEYIKRRDYIIEKM 307
PLN00143 PLN00143
tyrosine/nicotianamine aminotransferase; Provisional
147-341 1.03e-04

tyrosine/nicotianamine aminotransferase; Provisional


Pssm-ID: 165711 [Multi-domain]  Cd Length: 409  Bit Score: 44.62  E-value: 1.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 147 RSPAF--YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATG 224
Cdd:PLN00143  63 RSAKFnsYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHH 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 225 AEVR--------GVPVDAEGLRVDLLPDNAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGR 296
Cdd:PLN00143 143 LEIRhfdllpekGWEVDLDAVEAIADENTIAMVIINPGN--PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK 220
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489196956 297 SLESLRSLDRNGQVAYLGTFSKT-LFPELRLGYLL---PPASLREAVLA 341
Cdd:PLN00143 221 PFVPMGLFASIVPVITLGSISKRwMIPGWGLGWLVtcdPSGLLQICEIA 269
PRK08068 PRK08068
transaminase; Reviewed
138-319 1.52e-04

transaminase; Reviewed


Pssm-ID: 181219  Cd Length: 389  Bit Score: 43.76  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 138 VLQALRLQQRSPAFYKET--EGDPELRLAISRYLAINRAVQCDWNA-LMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYP 214
Cdd:PRK08068  50 IVEALQEAAENPANHKYSpfRGYPFLKEAAADFYKREYGVTLDPETeVAILFGGKAGLVELPQCLMNPGDTILVPDPGYP 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 215 PARASLLATGAEVRGVPVDAEGlrvDLLPD----------NAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALII 283
Cdd:PRK08068 130 DYLSGVALARAQFETMPLIAEN---NFLPDytkipeevaeKAKLMYLNyPNN--PTGAVATKAFFEETVAFAKKHNIGVV 204
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 489196956 284 EDDYDSEYRFDGRSLESLRSLDRNGQV-AYLGTFSKT 319
Cdd:PRK08068 205 HDFAYGAIGFDGQKPVSFLQTPGAKDVgIELYTLSKT 241
PLN00145 PLN00145
tyrosine/nicotianamine aminotransferase; Provisional
152-329 1.78e-04

tyrosine/nicotianamine aminotransferase; Provisional


Pssm-ID: 215074 [Multi-domain]  Cd Length: 430  Bit Score: 43.61  E-value: 1.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYP--PARASLlaTGAEVR- 228
Cdd:PLN00145  90 YSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPlyEARAVF--SGLEVRh 167
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 229 -------GVPVDAEGLRVDLLPDNAKLVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRSLESL 301
Cdd:PLN00145 168 fdllperGWEVDLEGVEALADENTVAMVIINPNN--PCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPM 245
                        170       180
                 ....*....|....*....|....*....
gi 489196956 302 RSLDRNGQVAYLGTFSKT-LFPELRLGYL 329
Cdd:PLN00145 246 GVFGEVAPVLTLGSISKRwVVPGWRLGWI 274
PLN03026 PLN03026
histidinol-phosphate aminotransferase; Provisional
158-337 3.78e-04

histidinol-phosphate aminotransferase; Provisional


Pssm-ID: 178597  Cd Length: 380  Bit Score: 42.76  E-value: 3.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 158 DPELRlAISRYLAINRAVQCDWnaLMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVRGVP------ 231
Cdd:PLN03026  85 DPESR-RLRAALAEDSGLESEN--ILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPrtpdfs 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 232 VDAEGLRVDLLPDNAKLVYVTpSHQFPLGMPMSLERRLQLLDWAqrhrALIIEDdydsEYRFDGRSLESLRSL-DRNGQV 310
Cdd:PLN03026 162 LDVPRIVEAVETHKPKLLFLT-SPNNPDGSIISDDDLLKILELP----ILVVLD----EAYIEFSTQESRMKWvKKYDNL 232
                        170       180
                 ....*....|....*....|....*...
gi 489196956 311 AYLGTFSKTL-FPELRLGYLLPPASLRE 337
Cdd:PLN03026 233 IVLRTFSKRAgLAGLRVGYGAFPLSIIE 260
PRK11402 PRK11402
transcriptional regulator PhoB;
17-76 4.64e-04

transcriptional regulator PhoB;


Pssm-ID: 183118 [Multi-domain]  Cd Length: 241  Bit Score: 41.74  E-value: 4.64e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196956  17 LYRQLRDAIL----HGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFV 76
Cdd:PRK11402  10 LYATVRQRLLddiaQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFV 73
PRK07337 PRK07337
pyridoxal phosphate-dependent aminotransferase;
138-235 5.29e-04

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 180937  Cd Length: 388  Bit Score: 42.35  E-value: 5.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 138 VLQAL-RLQQRSPAFYKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPA 216
Cdd:PRK07337  48 VVEAAaRALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCN 127
                         90
                 ....*....|....*....
gi 489196956 217 RASLLATGAEVRGVPVDAE 235
Cdd:PRK07337 128 RHFVAAAEGRPVLVPSGPA 146
PLN02450 PLN02450
1-aminocyclopropane-1-carboxylate synthase
147-389 9.78e-04

1-aminocyclopropane-1-carboxylate synthase


Pssm-ID: 178069 [Multi-domain]  Cd Length: 468  Bit Score: 41.66  E-value: 9.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 147 RSPAFYKETEGDPELRLAISRYLAINRA--VQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASL-LAT 223
Cdd:PLN02450  77 RELALFQDYHGLPAFKNALAEFMSEIRGnkVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLkWRT 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 224 GAEVrgVPV---DAEGLRV--DLLPD----------NAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDY 287
Cdd:PLN02450 157 GVEI--VPIhcsSSNGFQIteSALEEayqqaqklnlKVKGVLITnPSN--PLGTTTTRTELNLLVDFITAKNIHLISDEI 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 288 DSEYRFD------------GRSLESLRSLDRngqVAYLGTFSKTL-FPELRLGYLLppaSLREAVL-AARK-----LVDr 348
Cdd:PLN02450 233 YSGTVFDspgfvsvmevlkDRKLENTDVSNR---VHIVYSLSKDLgLPGFRVGAIY---SNDEMVVsAATKmssfgLVS- 305
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 489196956 349 hSETlqQRALALFIQRGDFARH-TRRLQREYAQRRGRLLERL 389
Cdd:PLN02450 306 -SQT--QYLLSALLSDKKFTKNyLEENQKRLKQRQKKLVSGL 344
PRK06207 PRK06207
pyridoxal phosphate-dependent aminotransferase;
152-319 1.28e-03

pyridoxal phosphate-dependent aminotransferase;


Pssm-ID: 235742  Cd Length: 405  Bit Score: 40.90  E-value: 1.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 152 YKETEGDPELRLAISRYLAINRAVQCD-WNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASLLATGAEVrgV 230
Cdd:PRK06207  74 YTEYRGDADIRELLAARLAAFTGAPVDaADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEM--V 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 231 PV--------DAEGLRVDLLPDNAK-----LVYVTPSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDYDSEYRFDGRS 297
Cdd:PRK06207 152 PVqldylsadKRAGLDLDQLEEAFKagvrvFLFSNPNN--PAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTS 229
                        170       180
                 ....*....|....*....|....
gi 489196956 298 LESLRSL--DRNGQVAYLGTfSKT 319
Cdd:PRK06207 230 YTHLRALpiDPENVITIMGP-SKT 252
PRK10079 PRK10079
phosphonate metabolism transcriptional regulator PhnF; Provisional
26-111 3.50e-03

phosphonate metabolism transcriptional regulator PhnF; Provisional


Pssm-ID: 182227 [Multi-domain]  Cd Length: 241  Bit Score: 38.99  E-value: 3.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956  26 LHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGPageappqrADGPLRPAARWARiepq 105
Cdd:PRK10079  25 LRQHYRCGDYLPAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMRP--------YDYPLNAQARFSQ---- 92

                 ....*.
gi 489196956 106 sGLMDQ 111
Cdd:PRK10079  93 -NLLDQ 97
PLN02607 PLN02607
1-aminocyclopropane-1-carboxylate synthase
147-382 3.82e-03

1-aminocyclopropane-1-carboxylate synthase


Pssm-ID: 215327 [Multi-domain]  Cd Length: 447  Bit Score: 39.49  E-value: 3.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 147 RSPAFYKETEGDPELRLAISRYLAINRA--VQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARASL-LAT 223
Cdd:PLN02607  86 RENALFQDYHGLKSFRQAMASFMEQIRGgkARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLrWRT 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 224 GAEVrgVPV---DAEGLRVDL------------LPDNAKLVYVT-PSHqfPLGMPMSLERRLQLLDWAQRHRALIIEDDY 287
Cdd:PLN02607 166 GVKI--VPIhcdSSNNFQVTPqaleaayqeaeaANIRVRGVLITnPSN--PLGATVQRSVLEDILDFVVRKNIHLVSDEI 241
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196956 288 DSEYRFDGRSLESLRSL-------DRNGQVAYLGTFSKTL-FPELRLGYLLppaSLREAVL-AARKLvdrHSETL----Q 354
Cdd:PLN02607 242 YSGSVFSASEFVSVAEIveargykGVAERVHIVYSLSKDLgLPGFRVGTIY---SYNDKVVtTARRM---SSFTLvssqT 315
                        250       260
                 ....*....|....*....|....*...
gi 489196956 355 QRALALFIQRGDFARHTRRLQREYAQRR 382
Cdd:PLN02607 316 QHLLASMLSDEEFTENYIRTNRERLRKR 343
PRK09990 PRK09990
DNA-binding transcriptional regulator GlcC; Provisional
25-78 6.52e-03

DNA-binding transcriptional regulator GlcC; Provisional


Pssm-ID: 182186 [Multi-domain]  Cd Length: 251  Bit Score: 38.21  E-value: 6.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489196956  25 ILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLASEGFLEGRVGSGTFVAR 78
Cdd:PRK09990  20 IVDGVLKVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGRGSFVAR 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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