|
Name |
Accession |
Description |
Interval |
E-value |
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
23-419 |
5.55e-176 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 496.61 E-value: 5.55e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 23 QALKLRLHRYIideidedgmnllegARSAVVQYVSEKVCEYGSRHQLAISRYELDRLAEEVVDELTGFGPLEILLRDPGV 102
Cdd:COG4962 3 QELVERVRRRL--------------DREELREEVRAAVAEALRAEGLVLSDAEREALARAVLDELFGLGPLEPLLDDPDV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 103 SEILVNGPGRVFVEREGRLYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLPDGSRVNAIIPPVALDGPCISI 182
Cdd:COG4962 69 TDIMVNGPDEVFVERGGRLERTDVRFDSEEELRRLIERIAARVGRRLDESSPIVDARLPDGSRVNAVIPPVARDGPSLSI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 183 RKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISggtgtgkttLLNVISGFIDERERIVTIEDTAELQLGHDHV 262
Cdd:COG4962 149 RKFRKRPLTLEDLVALGSLTPEMAEFLRAAVRARLNILVSggtgsgkttLLNALSGFIPPDERIVTIEDAAELQLQHPHV 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 263 VRLETRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGSMSTVHANSAMDSLLRMEMLVGLT 342
Cdd:COG4962 229 VRLETRPPNVEGAGEVTLRDLVRNALRMRPDRIIVGEVRGAEALDMLQAMNTGHDGSMSTLHANSARDALARLETLALMA 308
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489194632 343 GNRLPEQTLRLMICAALDVVVQITRLASGRRCISEVLEVLEVRDGVYVTNTLFSLDRRGSGQFVRQAAPVGQKFRQA 419
Cdd:COG4962 309 GENLPREAVRRQIASAIDLVVHLERLRDGRRRVTEIAEVTGMEGGRVVLQPIFRFDPGGLDAAGGVRPRFLERLEAA 385
|
|
| heli_sec_ATPase |
TIGR03819 |
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ... |
75-378 |
2.09e-101 |
|
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Pssm-ID: 200328 Cd Length: 340 Bit Score: 305.03 E-value: 2.09e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 75 ELDRLAEEVVDELTGFGPLEILLRDPGVSEILVNGPGRVFVEREGRLYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSP 154
Cdd:TIGR03819 37 EVLAAARALRRDLVGAGPLEPLLADPGVTDVLVNGPDEVWVDRGRGLERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQP 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 155 MVDARLPDGSRVNAIIPPVALDGPCISIRKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLN 234
Cdd:TIGR03819 117 WVDARLPDGTRLHAVLPPVATDGTCLSLRVPRRRTFTLDELVAAGTIPPGVARLLRALVAARLAFLVSGGTGSGKTTLLS 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 235 VISGFIDERERIVTIEDTAELQLGHDHVVRLETRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNT 314
Cdd:TIGR03819 197 ALLALVPPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNT 276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489194632 315 GHDGSMSTVHANSAMDSLLRMEMLVGLTGnrLPEQTLRLMICAALDVVVQITRLASGRRCISEV 378
Cdd:TIGR03819 277 GHDGGAGTLHANSPADVPARLEALGALAG--LDRAALHSQLAAALDVVLHVRRTPRGRRRVAEI 338
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
89-369 |
1.43e-79 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 246.43 E-value: 1.43e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 89 GFGPLEILlrDPGVSEILVNGPGRVFV--EREGRlYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLP----- 161
Cdd:pfam00437 1 NLIPLEAL--DEGASDIHVEPPERIVWirFRVDG-VLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPlrigg 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 162 DGSRVNAIIPPVALdGPCISIR--KFSQELLRSADLLAYQSVDEALLEFLRQAvsrRCNILISGGTGTGKTTLLNVISGF 239
Cdd:pfam00437 78 KGVRVRVSTLPTAG-GEKLVIRllDPSNVALSLDELGMTGAQDEALLEFLRQP---RGNILVTGPTGSGKTTTLYAALGE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 240 IDER-ERIVTIEDTAELQLGHDHVVRLETRppnaegyGEVTARDLIRNALRMRPDRIILGEIRGVEVLDV-LQAMNTGHD 317
Cdd:pfam00437 154 LNTRdENIVTVEDPVEIQLEGINQVQLNAR-------AGVTFADLLRAILRQDPDRIMVGEIRDLETAEIaLQAANTGHL 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 489194632 318 GsMSTVHANSAMDSLLRMEMLVgltgnrLPEQTLRLMICAAldVVVQITRLA 369
Cdd:pfam00437 227 V-LSTLHTNSAAGALTRLQDMG------VPPFELASSLLLV--IAQRLVRKL 269
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
205-381 |
4.79e-72 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 223.96 E-value: 4.79e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 205 LLEFLRQAVSRRCNILISGGTGTGKTTLLNVISGFIDERERIVTIEDTAELQLGHDHVVRLETRPPNAEGyGEVTARDLI 284
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEK-GEVTMADLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 285 RNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGSMSTVHANSAMDSLLRMEMLVGLTGNRLPEQTLRLMICAALDVVVQ 364
Cdd:cd01130 80 KAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIASAIDVIVH 159
|
170
....*....|....*..
gi 489194632 365 ITRLASGRRCISEVLEV 381
Cdd:cd01130 160 VKRLGDGVRRVTEIYEV 176
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
91-394 |
8.26e-50 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 171.08 E-value: 8.26e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 91 GP-LEILLRDPGVSEILVNGPGRVFVEREGRlyqsDLRFIDDHHVLR---VIQRILAPLGRRLDESSPMVDARLP-DGSR 165
Cdd:PRK13894 23 GPeLLAALNDPKTVEIMLNADGKLWQERLGE----PMRCIGTLRVAQaqaIIETIAGYHGKEVTRSKPILEGELPlDGSR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 166 VNAIIPPVAlDGPCISIRKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLNVIsgfIDE--- 242
Cdd:PRK13894 99 FAGQLPPVV-PAPTFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAI---INEmvi 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 243 ---RERIVTIEDTAELQLGHDHVVRLETRPpnaegygEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGS 319
Cdd:PRK13894 175 qdpTERVFIIEDTGEIQCAAENYVQYHTSI-------DVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGG 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489194632 320 MSTVHANSAMDSLLRMEMLVglTGNRLPEQTLRLMICAALDVVVQITRLASGRRcISEVLEVLEVRDGVYVTNTL 394
Cdd:PRK13894 248 AATLHANNAKAGLDRLKSLI--SMHPDAPKPIEPLIGEAVHVVVHIARTPGGRR-IQEILEVSGYANGQYITKTL 319
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
245-355 |
1.18e-07 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 52.84 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 245 RIVTIEDTAELQlgHDHVVRLETrppNAEGygEVTARDLIRNALRMRPDRIILGEIRgvevlD------VLQAMNTGHDg 318
Cdd:NF041000 157 QVITIEDPVEIK--EPNFLQLQV---NEKA--GMTYDTLLKAALRHRPDILIIGEIR-----DaetakaAIRAALTGHL- 223
|
90 100 110
....*....|....*....|....*....|....*..
gi 489194632 319 SMSTVHANSAMDSLLRMEMLvGLTGNRLpEQTLRLMI 355
Cdd:NF041000 224 VLSTVHAKSAAGVIYRLLEL-GISKEEL-EQTLIGIS 258
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
23-419 |
5.55e-176 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 496.61 E-value: 5.55e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 23 QALKLRLHRYIideidedgmnllegARSAVVQYVSEKVCEYGSRHQLAISRYELDRLAEEVVDELTGFGPLEILLRDPGV 102
Cdd:COG4962 3 QELVERVRRRL--------------DREELREEVRAAVAEALRAEGLVLSDAEREALARAVLDELFGLGPLEPLLDDPDV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 103 SEILVNGPGRVFVEREGRLYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLPDGSRVNAIIPPVALDGPCISI 182
Cdd:COG4962 69 TDIMVNGPDEVFVERGGRLERTDVRFDSEEELRRLIERIAARVGRRLDESSPIVDARLPDGSRVNAVIPPVARDGPSLSI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 183 RKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISggtgtgkttLLNVISGFIDERERIVTIEDTAELQLGHDHV 262
Cdd:COG4962 149 RKFRKRPLTLEDLVALGSLTPEMAEFLRAAVRARLNILVSggtgsgkttLLNALSGFIPPDERIVTIEDAAELQLQHPHV 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 263 VRLETRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGSMSTVHANSAMDSLLRMEMLVGLT 342
Cdd:COG4962 229 VRLETRPPNVEGAGEVTLRDLVRNALRMRPDRIIVGEVRGAEALDMLQAMNTGHDGSMSTLHANSARDALARLETLALMA 308
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489194632 343 GNRLPEQTLRLMICAALDVVVQITRLASGRRCISEVLEVLEVRDGVYVTNTLFSLDRRGSGQFVRQAAPVGQKFRQA 419
Cdd:COG4962 309 GENLPREAVRRQIASAIDLVVHLERLRDGRRRVTEIAEVTGMEGGRVVLQPIFRFDPGGLDAAGGVRPRFLERLEAA 385
|
|
| heli_sec_ATPase |
TIGR03819 |
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ... |
75-378 |
2.09e-101 |
|
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Pssm-ID: 200328 Cd Length: 340 Bit Score: 305.03 E-value: 2.09e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 75 ELDRLAEEVVDELTGFGPLEILLRDPGVSEILVNGPGRVFVEREGRLYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSP 154
Cdd:TIGR03819 37 EVLAAARALRRDLVGAGPLEPLLADPGVTDVLVNGPDEVWVDRGRGLERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQP 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 155 MVDARLPDGSRVNAIIPPVALDGPCISIRKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLN 234
Cdd:TIGR03819 117 WVDARLPDGTRLHAVLPPVATDGTCLSLRVPRRRTFTLDELVAAGTIPPGVARLLRALVAARLAFLVSGGTGSGKTTLLS 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 235 VISGFIDERERIVTIEDTAELQLGHDHVVRLETRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNT 314
Cdd:TIGR03819 197 ALLALVPPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNT 276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489194632 315 GHDGSMSTVHANSAMDSLLRMEMLVGLTGnrLPEQTLRLMICAALDVVVQITRLASGRRCISEV 378
Cdd:TIGR03819 277 GHDGGAGTLHANSPADVPARLEALGALAG--LDRAALHSQLAAALDVVLHVRRTPRGRRRVAEI 338
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
89-369 |
1.43e-79 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 246.43 E-value: 1.43e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 89 GFGPLEILlrDPGVSEILVNGPGRVFV--EREGRlYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLP----- 161
Cdd:pfam00437 1 NLIPLEAL--DEGASDIHVEPPERIVWirFRVDG-VLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPlrigg 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 162 DGSRVNAIIPPVALdGPCISIR--KFSQELLRSADLLAYQSVDEALLEFLRQAvsrRCNILISGGTGTGKTTLLNVISGF 239
Cdd:pfam00437 78 KGVRVRVSTLPTAG-GEKLVIRllDPSNVALSLDELGMTGAQDEALLEFLRQP---RGNILVTGPTGSGKTTTLYAALGE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 240 IDER-ERIVTIEDTAELQLGHDHVVRLETRppnaegyGEVTARDLIRNALRMRPDRIILGEIRGVEVLDV-LQAMNTGHD 317
Cdd:pfam00437 154 LNTRdENIVTVEDPVEIQLEGINQVQLNAR-------AGVTFADLLRAILRQDPDRIMVGEIRDLETAEIaLQAANTGHL 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 489194632 318 GsMSTVHANSAMDSLLRMEMLVgltgnrLPEQTLRLMICAAldVVVQITRLA 369
Cdd:pfam00437 227 V-LSTLHTNSAAGALTRLQDMG------VPPFELASSLLLV--IAQRLVRKL 269
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
205-381 |
4.79e-72 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 223.96 E-value: 4.79e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 205 LLEFLRQAVSRRCNILISGGTGTGKTTLLNVISGFIDERERIVTIEDTAELQLGHDHVVRLETRPPNAEGyGEVTARDLI 284
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEK-GEVTMADLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 285 RNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGSMSTVHANSAMDSLLRMEMLVGLTGNRLPEQTLRLMICAALDVVVQ 364
Cdd:cd01130 80 KAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIASAIDVIVH 159
|
170
....*....|....*..
gi 489194632 365 ITRLASGRRCISEVLEV 381
Cdd:cd01130 160 VKRLGDGVRRVTEIYEV 176
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
28-388 |
3.09e-70 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 228.81 E-value: 3.09e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 28 RLHRYIIDEIDEDGMNLLEGARSAVVQYVSEKVCEYGSRHQLAISRYELDRLAEEVVDELTGFGPLEILLRDPGVSEILV 107
Cdd:COG0630 99 ELLEEEERLLEELLLLEEEDALEDLEVLLLRELDSLLKDYKIKVSEERLEKLLYYLLRDFVGYGKLDPLMRDPNIEDISC 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 108 NGPG-RVFVE-REGRLYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLPDGSRVNAIIPP-VALDGPCISIRK 184
Cdd:COG0630 179 NGVGiPVYVYhRDYERIPTNIVFESEEELDNFVVKLAQRSGKHISVARPIVDATLPDGSRIALTLGPeVSRRGSSFTIRK 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 185 FSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLNVISGFIDERERIVTIEDTAELQLGHDHVVR 264
Cdd:COG0630 259 FREVPLTPIDLIEWGTLSPELAAYLWLLLENGKSVLVAGGTASGKTTLLNALLSFIPPDAKIVTIEDTRELNLPHENWIS 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 265 LETRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNTGHdGSMSTVHANSAMDSLLRMEMlvgltgn 344
Cdd:COG0630 339 LVTRESFGGEEGDVTMFDLLKAALRQRPDYIVVGEVRGEEAYTLFQAMATGH-GVLSTFHADSVESAINRLTS------- 410
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 489194632 345 rLPEQTLRLMIcAALDVVVQITRLASG----RRC--ISEVLEVLEVRDGV 388
Cdd:COG0630 411 -PPINVPRTLL-QALDLVVFQKRVRVGgkrvRRVtsIVEIVGYDPETGEI 458
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
97-378 |
2.03e-65 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 211.44 E-value: 2.03e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 97 LRDPGVSEILVNGPGRVFVEREGRLYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLPDGSRVNAIIPPVAL- 175
Cdd:TIGR02788 2 LDDEDVTEICINRPGEVWVEGPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPGGERVQIVIPPACEn 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 176 DGPCISIRKFSQELLRSADLL---AYQSV----------DEALLE---------FLRQAVSRRCNILISGGTGTGKTTLL 233
Cdd:TIGR02788 82 DTVSITIRKPSLVDFSLDDYEekgFFDTVraqsgtlsdnDEQLLElldagdikeFLRLAIASRKNIIISGGTGSGKTTFL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 234 NVISGFIDERERIVTIEDTAELQLGHDHVVRLeTRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMN 313
Cdd:TIGR02788 162 KSLVDEIPKDERIITIEDTREIFLPHPNYVHL-FYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRAVN 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489194632 314 TGHDGSMSTVHANSAMDSLLRMEMLV--GLTGNRLPEQTLRLMICAALDVVVQITRLASGRRcISEV 378
Cdd:TIGR02788 241 TGHPGSITTLHAGSPEEAFEQLALMVksSQAGLGLDFAYIVKLVREVIDIVVQINRRGGGRK-ITEV 306
|
|
| TrbB_P |
TIGR02782 |
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of ... |
96-391 |
5.34e-56 |
|
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation]
Pssm-ID: 274297 Cd Length: 299 Bit Score: 186.87 E-value: 5.34e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 96 LLRDPGVSEILVNGPGRVFVEREGRlYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLP-DGSRVNAIIPPVa 174
Cdd:TIGR02782 13 ALDDPGVVEIMLNPDGRLWVERLGS-GMSPLGEMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPlDGSRFEGLIPPV- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 175 LDGPCISIRKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLNVISGFIDER---ERIVTIED 251
Cdd:TIGR02782 91 VAAPSFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNdptDRVVIIED 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 252 TAELQLGHDHVVRLETRPpnaegyGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGSMSTVHANSAMDS 331
Cdd:TIGR02782 171 TRELQCAAPNVVQLRTSD------DAISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIHANNAKAA 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 332 LLRMEMLVGLTGNRLPEQtlrlMICAALDVVVQITRLASGRRcISEVLEVLEVRDGVYVT 391
Cdd:TIGR02782 245 LDRLEQLIQEVSVTPMQT----LIAEAVDLVIFIARTPAGRR-VQEIAKVKGFDDGNYIT 299
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
91-394 |
8.26e-50 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 171.08 E-value: 8.26e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 91 GP-LEILLRDPGVSEILVNGPGRVFVEREGRlyqsDLRFIDDHHVLR---VIQRILAPLGRRLDESSPMVDARLP-DGSR 165
Cdd:PRK13894 23 GPeLLAALNDPKTVEIMLNADGKLWQERLGE----PMRCIGTLRVAQaqaIIETIAGYHGKEVTRSKPILEGELPlDGSR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 166 VNAIIPPVAlDGPCISIRKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLNVIsgfIDE--- 242
Cdd:PRK13894 99 FAGQLPPVV-PAPTFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAI---INEmvi 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 243 ---RERIVTIEDTAELQLGHDHVVRLETRPpnaegygEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGS 319
Cdd:PRK13894 175 qdpTERVFIIEDTGEIQCAAENYVQYHTSI-------DVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGG 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489194632 320 MSTVHANSAMDSLLRMEMLVglTGNRLPEQTLRLMICAALDVVVQITRLASGRRcISEVLEVLEVRDGVYVTNTL 394
Cdd:PRK13894 248 AATLHANNAKAGLDRLKSLI--SMHPDAPKPIEPLIGEAVHVVVHIARTPGGRR-IQEILEVSGYANGQYITKTL 319
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
92-379 |
6.41e-48 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 166.47 E-value: 6.41e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 92 PLEILLRDPGVSEILVNGPGRVFVEREGRLYQSDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLPDGSRVNAIIP 171
Cdd:PRK13900 14 PLKNIFAEDGVNEISINKPGEVWVEKKGDIRCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQIVFP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 172 PVA-LDGPCISIRK----------------FSQELLRSADLLAYQSVDEALL-----EFLRQAVSRRCNILISGGTGTGK 229
Cdd:PRK13900 94 PACeIGQIVYSIRKpsgmqltlddyekmgaFDETATESLVDEDDVILNELLAekkikEFLEHAVISKKNIIISGGTSTGK 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 230 TTLLNVISGFIDERERIVTIEDTAELQLG-HDHVVRLETRPPNaEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDV 308
Cdd:PRK13900 174 TTFTNAALREIPAIERLITVEDAREIVLSnHPNRVHLLASKGG-QGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAFSF 252
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489194632 309 LQAMNTGHDGSMSTVHANSAMDSLLRMEMLVGLTGNRLPEQTLRLMICAALDVVVQITRLASGRRCISEVL 379
Cdd:PRK13900 253 LRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKRYVSEIY 323
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
97-394 |
1.12e-40 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 147.25 E-value: 1.12e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 97 LRDPGVSEILVNGPGRVFVEREGRLYQSDLRfIDDHHVLRVIQRILAPLGRRLDESSPMVDARLP-DGSRVNAIIPPVAl 175
Cdd:PRK13833 26 LDDATVVEIMLNPDGKLFIERLGHGVAPAGE-MSAAAAEVVIGSVAHALQSEADDERPIISGELPiGGHRFEGLLPPVV- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 176 DGPCISIRKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLN-VISGFIDER--ERIVTIEDT 252
Cdd:PRK13833 104 SGPAFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANaVIAEIVASApeDRLVILEDT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 253 AELQLGHDHVVRLETRppnaegyGEVTARDLIRNALRMRPDRIILGEIRGVEVLDVLQAMNTGHDGSMSTVHANSAMDSL 332
Cdd:PRK13833 184 AEIQCAAENAVALHTS-------DTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSNTAMSAL 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489194632 333 LRMEMLVGltgnRLPEQTLRLMICAALDVVVQITRLASGRRcISEVLEVLEVRDGVYVTNTL 394
Cdd:PRK13833 257 RRLEQLTA----EASQQPMQEVIGEAVDLIVSIERTGKGRR-VREVIHVEGFANGRYQTEHY 313
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
92-363 |
5.29e-30 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 118.85 E-value: 5.29e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 92 PLEILLRDPGVSEILVNGPGRVFVEREGRLYQSDLRFidDHHVLRVIQrILAPLGRRLD--ESSPMVDARLPDGSRVNAI 169
Cdd:PRK13851 13 PVLEWLDDPRTEEVAINRPGEAFVRQAGVFTKFPLPL--SYDDLEDIA-ILAGALRKQDvgPRNPLCATELPGGERLQIC 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 170 IPPVALDGPC-ISIRKFSQELLRSADLLA-YQS---------------VDEALLE---------FLRQAVSRRCNILISG 223
Cdd:PRK13851 90 LPPTVPSGTVsLTIRRPSSRVSELKEVSSrYDAsrwnqwqerrkrrdqLDEAILRhydngdleaFLHACVVGRLTMLLCG 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 224 GTGTGKTTLLNVISGFIDERERIVTIEDTAELQLGHDHVVRLeTRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGV 303
Cdd:PRK13851 170 PTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRL-LYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMRDD 248
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489194632 304 EVLDVLQAMNTGHDGSMSTVHANSAMDSLLRMEMLV--GLTGNRLPEQTLRLMICAALDVVV 363
Cdd:PRK13851 249 AAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVksSAQGASLEDRTLIDMLATAIDVIV 310
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
209-335 |
5.67e-18 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 80.90 E-value: 5.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 209 LRQAVSRRCNILISGGTGTGKTTLLNVISGFIDERERIVTIEDTAELQLGH-DHVVRLETRPpnaegygEVTARDLIRNA 287
Cdd:cd19477 3 IKDGIAIGKNVIVCGGTGSGKTTYIKSILEFIPKEERIISIEDTEEIVFKHhKNYTQLFFGG-------NITSADCLKSC 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 489194632 288 LRMRPDRIILGEIRGVEVLDVLQAMNTGHDGSMSTVHANSAMDSLLRM 335
Cdd:cd19477 76 LRQRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRL 123
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
240-381 |
2.18e-12 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 64.81 E-value: 2.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 240 IDERERIVTIEDTAELQLghDHVVRLETRPPNAEGYGevtarDLIRNALRMRPDRIILGEIRGVEVLD-VLQAMNTGHdg 318
Cdd:cd01129 36 NGPERNIITIEDPVEYQI--PGINQSQVNEKIGLTFA-----DALRAILRQDPDIIMVGEIRDAETAEiAIRAALTGH-- 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489194632 319 sM--STVHANSAMDSLLRMEMLvGLTGNRLpEQTLRLMICaaldvvvQitRLAsGRRCISEVLEV 381
Cdd:cd01129 107 -LvlSTLHTNDALGAITRLLDM-GIEPFLL-ASALRGVIA-------Q--RLV-GRTAIAEVLVL 158
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
245-355 |
1.18e-07 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 52.84 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 245 RIVTIEDTAELQlgHDHVVRLETrppNAEGygEVTARDLIRNALRMRPDRIILGEIRgvevlD------VLQAMNTGHDg 318
Cdd:NF041000 157 QVITIEDPVEIK--EPNFLQLQV---NEKA--GMTYDTLLKAALRHRPDILIIGEIR-----DaetakaAIRAALTGHL- 223
|
90 100 110
....*....|....*....|....*....|....*..
gi 489194632 319 SMSTVHANSAMDSLLRMEMLvGLTGNRLpEQTLRLMI 355
Cdd:NF041000 224 VLSTVHAKSAAGVIYRLLEL-GISKEEL-EQTLIGIS 258
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
284-335 |
1.48e-06 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 48.69 E-value: 1.48e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 489194632 284 IRNALRMRPDRIILGEIRGVEVLDV-LQAMNTGHDgSMSTVHANSAMDSLLRM 335
Cdd:cd01131 87 LRAALREDPDVILVGEMRDLETIELaLTAAETGHL-VFSTLHTNSAAQTIDRI 138
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
229-335 |
5.31e-06 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 46.60 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489194632 229 KTTLLNVISGFIDERE----RIVTIEDTAELQLG-----HDHVVRLETrPPNAEGYGEVtardlIRNALRMRPDRIILGE 299
Cdd:cd19516 24 KSTLLAAIYRYILENDppdrKIITYEDPIEFVYDgikskHSIIVQSQI-PRHFKSFAKA-----VREALRRKPSLIGVGE 97
|
90 100 110
....*....|....*....|....*....|....*..
gi 489194632 300 IRGVEVLD-VLQAMNTGHDgSMSTVHANSAMDSLLRM 335
Cdd:cd19516 98 LRDQETISaAVEASLTGHP-VYSTVHTKSVAETIRRL 133
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
285-335 |
5.11e-05 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 45.09 E-value: 5.11e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 489194632 285 RNALRMRPDRIILGEIRGVEVLDvlQAMN---TGHDgSMSTVHANSAMDSLLRM 335
Cdd:COG5008 190 KNALRQAPDVILIGEIRDRETME--HAIAfaeTGHL-CLATLHANNANQALDRI 240
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
284-335 |
1.32e-04 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 43.54 E-value: 1.32e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 489194632 284 IRNALRMRPDRIILGEIRGVEVLD-VLQAMNTGHdgsMSTVHANSAMDSLLRM 335
Cdd:COG2805 191 LRAALREDPDVILVGEMRDLETIEaALTAAETGHl-vFATLHTNSAAQTIDRI 242
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
284-335 |
1.70e-04 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 43.64 E-value: 1.70e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 489194632 284 IRNALRMRPDRIILGEIRGVEVLDV-LQAMNTGHdGSMSTVHANSAMDSLLRM 335
Cdd:COG2804 375 LRSILRQDPDVIMVGEIRDLETAEIaVQAALTGH-LVLSTLHTNDAPSAITRL 426
|
|
| |
