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Conserved domains on  [gi|489193256|ref|WP_003102591|]
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MULTISPECIES: PP0621 family protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PP0621_fam NF041023
PP0621 family protein; Members of this family of small proteins have an N-terminal signal ...
 4-72 1.29e-28

PP0621 family protein; Members of this family of small proteins have an N-terminal signal peptide and three invariant Cys resisdues, two in a CXXC motif.


:

Pssm-ID: 468952  Cd Length: 70  Bit Score: 97.31  E-value: 1.29e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193256  4 FRLLFWIALIAIAFWLWRRFTRPT-PRQQQRPQDEPSASPMVRCAHCGVHVPQANALAHEQRWYCSQAHL 72
Cdd:NF041023  1 MKLLLLIAIIALVYWLFRKKRRPArARKKPKKPKAAEPEPMVRCAHCGVHLPRSEAILSGGKYYCSKEHL 70
 
Name Accession Description Interval E-value
PP0621_fam NF041023
PP0621 family protein; Members of this family of small proteins have an N-terminal signal ...
 4-72 1.29e-28

PP0621 family protein; Members of this family of small proteins have an N-terminal signal peptide and three invariant Cys resisdues, two in a CXXC motif.


Pssm-ID: 468952  Cd Length: 70  Bit Score: 97.31  E-value: 1.29e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193256  4 FRLLFWIALIAIAFWLWRRFTRPT-PRQQQRPQDEPSASPMVRCAHCGVHVPQANALAHEQRWYCSQAHL 72
Cdd:NF041023  1 MKLLLLIAIIALVYWLFRKKRRPArARKKPKKPKAAEPEPMVRCAHCGVHLPRSEAILSGGKYYCSKEHL 70
 
Name Accession Description Interval E-value
PP0621_fam NF041023
PP0621 family protein; Members of this family of small proteins have an N-terminal signal ...
 4-72 1.29e-28

PP0621 family protein; Members of this family of small proteins have an N-terminal signal peptide and three invariant Cys resisdues, two in a CXXC motif.


Pssm-ID: 468952  Cd Length: 70  Bit Score: 97.31  E-value: 1.29e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193256  4 FRLLFWIALIAIAFWLWRRFTRPT-PRQQQRPQDEPSASPMVRCAHCGVHVPQANALAHEQRWYCSQAHL 72
Cdd:NF041023  1 MKLLLLIAIIALVYWLFRKKRRPArARKKPKKPKAAEPEPMVRCAHCGVHLPRSEAILSGGKYYCSKEHL 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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