|
Name |
Accession |
Description |
Interval |
E-value |
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
23-794 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 907.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 23 FTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQLGRDGNVLVVTVVERPSISSIEIEGNK 102
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 103 AISKEDLLKGLKqsGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEINAEVIPQPRNRVALKININEGTVAAISHINVV 182
Cdd:TIGR03303 81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 183 GNTVFSEEDLTDLFELKTTNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDIASTQVSITPDKKHVYITVNINEG 262
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 263 EKYTIRDVKLTGDLKVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDP 342
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 343 GKRAYVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVpGTDDQVDVNYSVEEQPS 422
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 423 GSITASVGFAQSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDELDVDv 502
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFS- 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 503 aSYSVNSLGAGMSIGYPISETSRLTYGLSVQRDQIDTGRYTVDEIYDFLDKEGDNFTNFKASIGWSESTLNKGVLATRGH 582
Cdd:TIGR03303 477 -DYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGS 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 583 SQSLTLETTLPGSDLSFYKIDYRGQVFAPLTDN--YTMRFHTELGYGDGYGSTErLPFYENYYAGGFNSVRGFKDSTLGP 660
Cdd:TIGR03303 556 IQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEddWVLSLRGRLGYGNGYGGKD-LPFYERFYAGGIGSVRGFESNGIGP 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 661 RstpsraykdgkiipgpdergrytDPDQDPEAFGGNILITGGAELLFPLPFVKDQRQLRTVLFWDVGSTFDTDcptkTTT 740
Cdd:TIGR03303 635 R-----------------------DINDSGDSIGGNAMATANVELIFPLPFLPEDNGLRGSVFFDAGNVWGTD----QKK 687
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 489189206 741 NCDGIKTDNLASSVGVGLTWITALGPLSFSLATPIKKPDNAETQVFQFSLGQTF 794
Cdd:TIGR03303 688 EGDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-794 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 746.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 1 MKRFLLPALLsaLMIAEVH-AESFTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQLGRD 79
Cdd:PRK11067 3 MKKLLIASLL--FSSATVYgAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 80 GNVLVVTVVERPSISSIEIEGNKAIsKEDLLK-GLKQSGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEINAEVIPQP 158
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSV-KDDMLKqNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 159 RNRVALKININEGTVAAISHINVVGNTVFSEEDLTDLFELKT-TNWLSFFkNDDKYAREKLSGDLERLRSYYLDRGYINM 237
Cdd:PRK11067 160 RNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDeVPWWNVV-GDRKYQKQKLAGDLETLRSYYLDRGYARF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 238 DIASTQVSITPDKKHVYITVNINEGEKYTIRDVKLTGDLKVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYT 317
Cdd:PRK11067 239 NIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 318 FANVNGVPEAHDDDKTVSVTFVVDPGKRAYVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEV 397
Cdd:PRK11067 319 YPRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 398 NVETPAVPGTDDQVDVNYSVEEQPSGSITASVGFAQSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYW 477
Cdd:PRK11067 399 DVDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYF 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 478 TVDGVSLGYNAFYrkTDYDELDVDVASYSVNSLGAGMSIGYPISETSRLTYGL-------SVQRDQIDTGRY--TVDEIY 548
Cdd:PRK11067 479 TVDGVSLGGRIFY--NDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLgyvhnslSNMQPQVAMWRYlySMGENP 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 549 DFLDKEGDNFTNFKASIGWSESTLNKGVLATRGHSQSLTLETTLPGSDLSFYKIDYRGQVFAPLTD--NYTMRFHTELGY 626
Cdd:PRK11067 557 SSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDdhKWVLLGRGRLGY 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 627 GDGYGSTErLPFYENYYAGGFNSVRGFKDSTLGPRStpsrAYKDGKIIPGPDERGRYTDPDQDpeAFGGNILITGGAELL 706
Cdd:PRK11067 637 GDGLGGKE-MPFYENFYAGGSSTVRGFQSNTIGPKA----VYYPGQASNYTQDGAKDLCKSDD--AVGGNAMAVASLELI 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 707 FPLPFVKD--QRQLRTVLFWDVGSTFDTDCPTKTTTNCDGI----KTDNLASSVGVGLTWITALGPLSFSLATPIKKPDN 780
Cdd:PRK11067 710 TPTPFISDkyANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYpdysDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDG 789
|
810
....*....|....
gi 489189206 781 AETQVFQFSLGQTF 794
Cdd:PRK11067 790 DKAEQFQFNIGKTW 803
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
25-794 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 745.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 25 VSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQLGRDGNVLVVTVVERPSISSIEIEGNKAI 104
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 105 SKEDLLKGLkqsGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEINaevIPQPRNRVALKININEGTVAAISHINVVGN 184
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT---ITPERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 185 TVFSEEDLTDLFELKTTNWLSffkNDDKYAREKLSGDLERLRSYYLDRGYINMDIASTQVSITPDKKHVYITVNINEGEK 264
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 265 YTIRDVKLTGDLkVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDPGK 344
Cdd:COG4775 232 YKVGDIKFEGNL-VDEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 345 RAYVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVPGTDDQVDVNYSVEEQPSGS 424
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 425 ITASVGFAQSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDeldvDVAS 504
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDAS----DYSS 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 505 YSVNSLGAGMSIGYPISETSRLTYGLSVQRDQIDTgrytVDEIYDFLDKEGDNFTNFKASIGWSESTLNKGVLATRGHSQ 584
Cdd:COG4775 467 YDLKRTGGGLGLGYPLSEDLRLSLGYGYERTDISD----VDSSPDYLPDQNGSSNTSSLGLGLTYDTRDNPLFPTRGSYL 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 585 SLTLETTLP--GSDLSFYKIDYRGQVFAPLTDNYTMRFHTELGYGDGYGSTerLPFYENYYAGGFNSVRGFKDSTLGPRs 662
Cdd:COG4775 543 SLSLEFAGPylGGDLEYYKLSADARYYFPLGKKLVLALRAEAGYLGGYGKD--LPFFERFYLGGFGSLRGYEENSLGPR- 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 663 tpsraykdgkiipgpdergrytdpdqdpeaFGGNILITGGAELLFPLPFvKDQRQLRTVLFWDVGSTFDTDcptktttnc 742
Cdd:COG4775 620 ------------------------------LGGNAYLLGSAELRFPLPL-PPSAGLRGALFVDAGNVWDSG--------- 659
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 489189206 743 DGIKTDNLASSVGVGLTWITALGPLSFSLATPIKKPDNAETQVFQFSLGQTF 794
Cdd:COG4775 660 DDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
447-790 |
8.84e-102 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 316.99 E-value: 8.84e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 447 NFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDELDVDvaSYSVNSLGAGMSIGYPISETSRL 526
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSD--SYRITTYGFSVSLGRPITENWSL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 527 TYGLSVQRDQIDTGRYTVDEIYDF-LDKEGDNFTNFKASIGWSESTLNKGVLATRGHSQSLTLETTL--PGSDLSFYKID 603
Cdd:pfam01103 79 SLGLGYQHNKILDESGSPNIRNYYpSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSYYKLT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 604 YRGQVFAPLTD--NYTMRFHTELGYGDGYGSTErLPFYENYYAGGFNSVRGFKDSTLGPRSTpsraykdgkiipgpderg 681
Cdd:pfam01103 159 ADGSYYYPLGKddSFVLSARVALGYLDGYGTKD-LPFYERFYAGGSNSVRGFEYGGIGPRDE------------------ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 682 rytdpdqDPEAFGGNILITGGAELLFPLPFVKDQrQLRTVLFWDVGSTFDTDCPtkTTTNCDGIK-TDNLASSVGVGLTW 760
Cdd:pfam01103 220 -------DGDALGGNSYVVASLELRFPLPFVPKQ-SVRGVLFFDAGNVWNTGST--DPGSSRGARsKAGIRASVGVGLRW 289
|
330 340 350
....*....|....*....|....*....|
gi 489189206 761 ITALGPLSFSLATPIKKPDNAETQVFQFSL 790
Cdd:pfam01103 290 LSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
23-794 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 907.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 23 FTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQLGRDGNVLVVTVVERPSISSIEIEGNK 102
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 103 AISKEDLLKGLKqsGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEINAEVIPQPRNRVALKININEGTVAAISHINVV 182
Cdd:TIGR03303 81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 183 GNTVFSEEDLTDLFELKTTNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDIASTQVSITPDKKHVYITVNINEG 262
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 263 EKYTIRDVKLTGDLKVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDP 342
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 343 GKRAYVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVpGTDDQVDVNYSVEEQPS 422
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 423 GSITASVGFAQSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDELDVDv 502
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFS- 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 503 aSYSVNSLGAGMSIGYPISETSRLTYGLSVQRDQIDTGRYTVDEIYDFLDKEGDNFTNFKASIGWSESTLNKGVLATRGH 582
Cdd:TIGR03303 477 -DYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGS 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 583 SQSLTLETTLPGSDLSFYKIDYRGQVFAPLTDN--YTMRFHTELGYGDGYGSTErLPFYENYYAGGFNSVRGFKDSTLGP 660
Cdd:TIGR03303 556 IQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEddWVLSLRGRLGYGNGYGGKD-LPFYERFYAGGIGSVRGFESNGIGP 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 661 RstpsraykdgkiipgpdergrytDPDQDPEAFGGNILITGGAELLFPLPFVKDQRQLRTVLFWDVGSTFDTDcptkTTT 740
Cdd:TIGR03303 635 R-----------------------DINDSGDSIGGNAMATANVELIFPLPFLPEDNGLRGSVFFDAGNVWGTD----QKK 687
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 489189206 741 NCDGIKTDNLASSVGVGLTWITALGPLSFSLATPIKKPDNAETQVFQFSLGQTF 794
Cdd:TIGR03303 688 EGDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-794 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 746.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 1 MKRFLLPALLsaLMIAEVH-AESFTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQLGRD 79
Cdd:PRK11067 3 MKKLLIASLL--FSSATVYgAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 80 GNVLVVTVVERPSISSIEIEGNKAIsKEDLLK-GLKQSGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEINAEVIPQP 158
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSV-KDDMLKqNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 159 RNRVALKININEGTVAAISHINVVGNTVFSEEDLTDLFELKT-TNWLSFFkNDDKYAREKLSGDLERLRSYYLDRGYINM 237
Cdd:PRK11067 160 RNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDeVPWWNVV-GDRKYQKQKLAGDLETLRSYYLDRGYARF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 238 DIASTQVSITPDKKHVYITVNINEGEKYTIRDVKLTGDLKVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYT 317
Cdd:PRK11067 239 NIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 318 FANVNGVPEAHDDDKTVSVTFVVDPGKRAYVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEV 397
Cdd:PRK11067 319 YPRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 398 NVETPAVPGTDDQVDVNYSVEEQPSGSITASVGFAQSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYW 477
Cdd:PRK11067 399 DVDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYF 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 478 TVDGVSLGYNAFYrkTDYDELDVDVASYSVNSLGAGMSIGYPISETSRLTYGL-------SVQRDQIDTGRY--TVDEIY 548
Cdd:PRK11067 479 TVDGVSLGGRIFY--NDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLgyvhnslSNMQPQVAMWRYlySMGENP 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 549 DFLDKEGDNFTNFKASIGWSESTLNKGVLATRGHSQSLTLETTLPGSDLSFYKIDYRGQVFAPLTD--NYTMRFHTELGY 626
Cdd:PRK11067 557 SSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDdhKWVLLGRGRLGY 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 627 GDGYGSTErLPFYENYYAGGFNSVRGFKDSTLGPRStpsrAYKDGKIIPGPDERGRYTDPDQDpeAFGGNILITGGAELL 706
Cdd:PRK11067 637 GDGLGGKE-MPFYENFYAGGSSTVRGFQSNTIGPKA----VYYPGQASNYTQDGAKDLCKSDD--AVGGNAMAVASLELI 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 707 FPLPFVKD--QRQLRTVLFWDVGSTFDTDCPTKTTTNCDGI----KTDNLASSVGVGLTWITALGPLSFSLATPIKKPDN 780
Cdd:PRK11067 710 TPTPFISDkyANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYpdysDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDG 789
|
810
....*....|....
gi 489189206 781 AETQVFQFSLGQTF 794
Cdd:PRK11067 790 DKAEQFQFNIGKTW 803
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
25-794 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 745.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 25 VSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQLGRDGNVLVVTVVERPSISSIEIEGNKAI 104
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 105 SKEDLLKGLkqsGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEINaevIPQPRNRVALKININEGTVAAISHINVVGN 184
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT---ITPERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 185 TVFSEEDLTDLFELKTTNWLSffkNDDKYAREKLSGDLERLRSYYLDRGYINMDIASTQVSITPDKKHVYITVNINEGEK 264
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 265 YTIRDVKLTGDLkVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDPGK 344
Cdd:COG4775 232 YKVGDIKFEGNL-VDEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 345 RAYVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVPGTDDQVDVNYSVEEQPSGS 424
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 425 ITASVGFAQSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDeldvDVAS 504
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDAS----DYSS 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 505 YSVNSLGAGMSIGYPISETSRLTYGLSVQRDQIDTgrytVDEIYDFLDKEGDNFTNFKASIGWSESTLNKGVLATRGHSQ 584
Cdd:COG4775 467 YDLKRTGGGLGLGYPLSEDLRLSLGYGYERTDISD----VDSSPDYLPDQNGSSNTSSLGLGLTYDTRDNPLFPTRGSYL 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 585 SLTLETTLP--GSDLSFYKIDYRGQVFAPLTDNYTMRFHTELGYGDGYGSTerLPFYENYYAGGFNSVRGFKDSTLGPRs 662
Cdd:COG4775 543 SLSLEFAGPylGGDLEYYKLSADARYYFPLGKKLVLALRAEAGYLGGYGKD--LPFFERFYLGGFGSLRGYEENSLGPR- 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 663 tpsraykdgkiipgpdergrytdpdqdpeaFGGNILITGGAELLFPLPFvKDQRQLRTVLFWDVGSTFDTDcptktttnc 742
Cdd:COG4775 620 ------------------------------LGGNAYLLGSAELRFPLPL-PPSAGLRGALFVDAGNVWDSG--------- 659
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 489189206 743 DGIKTDNLASSVGVGLTWITALGPLSFSLATPIKKPDNAETQVFQFSLGQTF 794
Cdd:COG4775 660 DDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
447-790 |
8.84e-102 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 316.99 E-value: 8.84e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 447 NFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDELDVDvaSYSVNSLGAGMSIGYPISETSRL 526
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSD--SYRITTYGFSVSLGRPITENWSL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 527 TYGLSVQRDQIDTGRYTVDEIYDF-LDKEGDNFTNFKASIGWSESTLNKGVLATRGHSQSLTLETTL--PGSDLSFYKID 603
Cdd:pfam01103 79 SLGLGYQHNKILDESGSPNIRNYYpSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSYYKLT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 604 YRGQVFAPLTD--NYTMRFHTELGYGDGYGSTErLPFYENYYAGGFNSVRGFKDSTLGPRSTpsraykdgkiipgpderg 681
Cdd:pfam01103 159 ADGSYYYPLGKddSFVLSARVALGYLDGYGTKD-LPFYERFYAGGSNSVRGFEYGGIGPRDE------------------ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 682 rytdpdqDPEAFGGNILITGGAELLFPLPFVKDQrQLRTVLFWDVGSTFDTDCPtkTTTNCDGIK-TDNLASSVGVGLTW 760
Cdd:pfam01103 220 -------DGDALGGNSYVVASLELRFPLPFVPKQ-SVRGVLFFDAGNVWNTGST--DPGSSRGARsKAGIRASVGVGLRW 289
|
330 340 350
....*....|....*....|....*....|
gi 489189206 761 ITALGPLSFSLATPIKKPDNAETQVFQFSL 790
Cdd:pfam01103 290 LSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
215-794 |
3.54e-65 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 227.47 E-value: 3.54e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 215 REKLSGDLERLRSYYLDRGYINmdiASTQVSITPDKKHVYITVNINEGEKYTIRDVKLTGDLKVPEEEVKRLLL----VQ 290
Cdd:COG0729 54 RRLARADPERIRAALRAEGYYS---PTVTIRLDGRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQDPARRKLLaawpLK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 291 KGQVFSRKVMTTTSDLITRRLGNEGYTFANVNG-VPEAHDDDKTVSVTFVVDPGKRAYVNRINFRGNTKTEDEVLRREMR 369
Cdd:COG0729 131 PGDPLRHGAYEAAKSALLDALRERGYPDARFTQsRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAP 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 370 QMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVPGTDDQVDVNYSVEEQPSGSITASVGFAQSAGLILGGSISQNNFL 449
Cdd:COG0729 211 FKPGEPYSPDKLLELQQRLQSTGYFSSVRVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLF 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 450 GTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDeldvdvaSYSVNSLGAGMSIGYPISETSRLTYG 529
Cdd:COG0729 291 GRGHRLRLELELSQPEQSLSADYRIPPLFPLGQYLSLGAGLEREDTD-------DYDSRSLTLGAGRTRRLSDGWTRSLG 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 530 LSVQRDQIDTGRYTvdeiydfldkegDNFTNFKASIGWSESTLNKGVLATRGHSQSLTLETTLP--GSDLSFYKIDYRGQ 607
Cdd:COG0729 364 LRLLYERFTDGDDD------------RTYTLLSPGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARGS 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 608 VFAPLTDNYTMRFHTELGYGDGyGSTERLPFYENYYAGGFNSVRGFKDSTLGPRstpsraYKDGKIIPgpderGRYtdpd 687
Cdd:COG0729 432 WYRPLGERHRLAGRAELGAILG-ADFDDVPPSLRFFAGGDGSVRGYGYQSLGPR------DGDGDVIG-----GRS---- 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 688 qdpeafggniLITGGAELLFPLPfvkdqRQLRTVLFWDVGSTFDTdcptktttncdgIKTDNLASSVGVGLTWITALGPL 767
Cdd:COG0729 496 ----------LAVGSLEYRYRVT-----ENWGLAVFVDAGNAFND------------FPFSDLKVGAGLGLRWYSPVGPI 548
|
570 580
....*....|....*....|....*..
gi 489189206 768 SFSLATPIKKPDNAETQvFQFSLGQTF 794
Cdd:COG0729 549 RLDLAYPLNDRDDSSFR-LYISLGQAF 574
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
260-794 |
2.49e-24 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 108.12 E-value: 2.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 260 NEGEKYTIRDVKLTGDLKVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNgVPEahdddKTVS---V 336
Cdd:COG2831 59 AEGPCFTIKRIRVEGNTVLPEEELQALLAPYLGRCLTLADLNALADAITNLYRDRGYITSRAY-LPP-----QDLSdgvL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 337 TFVVDPGKrayVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQSKARLERLGYfkeVNVETPAVPGT-DDQVDVNY 415
Cdd:COG2831 133 RIQVVEGR---VGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLPG---VQVTAELRPGTePGTSDLVV 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 416 SVEEQPSGSITASV---GFAQSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVdpYWTV----DGVSLGYNA 488
Cdd:COG2831 207 TVEEAKPFRGSLGLdnsGSPSTGRYRLGASLSLDNLLGLGDQLSLSYSRSLDGDGSRSYSL--SYSVplgyWGLTLGLSY 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 489 FYrkTDYD-ELDVDVASYSVNSLGAGMSIGYPI--SETSRLTYGLSVQRdqidtgRYTVDEIYDFLDKEG-DNFTNFKAS 564
Cdd:COG2831 285 SR--YRSRvGGPFGTLDISGKSQTYGLRLSYPLirSRDQKLSLSLGLDY------KDSRNYLLGTEIEVQrRRLSVLRLG 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 565 IGWSeSTLNKGVLATR-GHSQSLTL------ETTLPGSDLSFYKIDYRGQVFAPLTDNYTMRFHtelgyGDGYGSTERLP 637
Cdd:COG2831 357 LSYT-RRLGGGVLSLSlSFSQGLDWlgatpaPDASRGPDGRFTKLRLSASRVQPLPQDFSLLLR-----LDGQYSSDPLL 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 638 FYENYYAGGFNSVRGFKDSTL-GprstpsraykdgkiipgpdERGrytdpdqdpeafggnilITGGAELLFPLPFVKDQR 716
Cdd:COG2831 431 SSEQFSLGGRYSVRGYDEGELsG-------------------DNG-----------------WYLSNELRWPLPRLSLLG 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 717 QLRTVLFWDVGSTFDTDcptkttTNCDGIKTDNLAsSVGVGLTWiTALGPLSFSL--ATPIKKPD-NAETQVFQFSLGQT 793
Cdd:COG2831 475 GLQLYAFLDAGRVWNNS------ALPGQLNGRTLA-GAGLGLRL-SLGKNLSLDLdyARPLGDPDgDTDNRRLYFSLSYS 546
|
.
gi 489189206 794 F 794
Cdd:COG2831 547 F 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
266-343 |
3.54e-17 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 76.61 E-value: 3.54e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489189206 266 TIRDVKLTGDLKVPEEEVKRLLLVQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDPG 343
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
176-262 |
6.05e-17 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 75.84 E-value: 6.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 176 ISHINVVGNTVFSEEDLTDLFELKTtnwlsffknDDKYAREKLSGDLERLRSYYLDRGYINMDIaSTQVSITPDKKHVYI 255
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLGLKE---------GDVYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVDL 71
|
....*..
gi 489189206 256 TVNINEG 262
Cdd:pfam07244 72 TFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
93-171 |
1.29e-14 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 69.29 E-value: 1.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 93 ISSIEIEGNKAISKEDLLKGLKqsgLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEINAEV-IPQPRNRVALKININEG 171
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLG---LKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVeIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
347-419 |
6.25e-13 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 64.67 E-value: 6.25e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489189206 347 YVNRINFRGNTKTEDEVLRREMRQMEGGWASTYLIDQS----KARLERLGYFKEVNVETPAVPGTDDQVDVNYSVEE 419
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDkealKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDE 77
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
231-659 |
4.53e-09 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 59.97 E-value: 4.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 231 DRGY-INMDIA--STQVSITPDKKHVYITVNINEGEKYTIRDVKLTGDLKVPEEEVKRLLLVQKGQ-VFSRKVMTTTSDL 306
Cdd:TIGR00992 152 DRFRcINVGLMpqSKPLEMDVDMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQgIVSARLLQEIRDR 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 307 ITRRLGNEGYTFANVNGVPEAHDDDktvsVTFVVDPG--KRAYVNRINFRGNT---KTEDEVLRREMR-QMEGGWasTYL 380
Cdd:TIGR00992 232 VQEWYHNEGYACAQVVNFGNLNTDE----VVCEVVEGdiTNLQIQFFDKLGNVvegNTRDPVVTRELPkQLKPGD--VFN 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 381 IDQSKARLER---LGYFKevNVETPAVPGTDDQ--VDVNYSVEEQPSGSITASV---------GFAQSAGLILGGSIS-- 444
Cdd:TIGR00992 306 IEAGKTALQNinsLGLFS--NIEVNPRPDEMNEgeIIVEIKLKELEQKSAEVSTewsivpgrgGRPTLASSQPGGTITfe 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 445 QNNFLGTGNKVSIGLTRSEYQTR-----YNFGFVDPYwtVDGVSLGYNAFYRKTDYDELDV-----------DVASYSVN 508
Cdd:TIGR00992 384 HRNLQGLNRSLGGSVTTSNFLNPqddllFKVEYTHPY--LDGVDNPRNRTYTASCFNSRKLspvftggpgvnEVPSIWVD 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 509 SLGAGMSIGYPISETSRLTYGLSVQRdqiDTGRYTVDEIYD----FLDKEGDNFTN-------------FKASIGWSEST 571
Cdd:TIGR00992 462 RAGVKANITENFARQSKFTYGLVMEE---IFTRDESRHINAngqrSLPSGPISADGppttlsgtgvdrmAFLQANITRDN 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 572 LNKGVLATRGHSQSLTLETTLP-GSDLSFYKiDYRGQV--FAPL---------TDNYTMRFHTELGygdgyGSTERLPFY 639
Cdd:TIGR00992 539 TNFVNGPTVGSRVRFQVDQGLGvGSGFPFFN-RHQLTYtkFIQLnwvelgagkSPPPVLVLHGHYG-----GCVGDLPSY 612
|
490 500
....*....|....*....|
gi 489189206 640 ENYYAGGFNSVRGFKDSTLG 659
Cdd:TIGR00992 613 DAFILGGPYSVRGYNMGELG 632
|
|
| FtsQ |
COG1589 |
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning]; ... |
4-90 |
9.89e-04 |
|
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441197 [Multi-domain] Cd Length: 241 Bit Score: 41.55 E-value: 9.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 4 FLLPALLSALMIAEVHAESFTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQLGRD-GNV 82
Cdd:COG1589 21 LLLLLLLALLVWLLLFSPLFPVREVEVEGNSHVSAEEIRAALGILLGGNLFTLDLDAIRERLEALPWVKSASVRRRwPDT 100
|
....*...
gi 489189206 83 LVVTVVER 90
Cdd:COG1589 101 LVIEVTER 108
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
23-92 |
1.71e-03 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 42.00 E-value: 1.71e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489189206 23 FTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQDIQL-------GRDGNVLVVTVVERPS 92
Cdd:COG4775 312 VYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVetepgpsTPDQVDLVVDVKEKPT 388
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
23-91 |
7.63e-03 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 39.88 E-value: 7.63e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489189206 23 FTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQ------DIQLGRDGNV-LVVTVVERP 91
Cdd:COG0729 187 YRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSsvrvtpDEDPAPDGTVpVTVTLTERK 262
|
|
| POTRA_1 |
pfam08478 |
POTRA domain, FtsQ-type; FtsQ/DivIB bacterial division proteins (pfam03799) contain an ... |
92-170 |
7.93e-03 |
|
POTRA domain, FtsQ-type; FtsQ/DivIB bacterial division proteins (pfam03799) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts.
Pssm-ID: 430019 [Multi-domain] Cd Length: 69 Bit Score: 35.62 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489189206 92 SISSIEIEGNKAISKEDLlkgLKQSGLAEGEIFQRATLEGVRNELQRQ-YVAQgrysaeinAEVIPQPRNRvaLKININE 170
Cdd:pfam08478 2 PIRQVEVSGNKHLSTEEI---RKALGIQLGTSFFSLDLNAIEDRLEKLpWVKS--------ATVRRQWPNT--LRITVTE 68
|
|
| |
