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Conserved domains on  [gi|489186266|ref|WP_003095683|]
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MULTISPECIES: YtjB family periplasmic protein [Pseudomonas]

Protein Classification

YtjB family periplasmic protein( domain architecture ID 10007918)

YtjB/Smp family periplasmic protein similar to Salmonella enterica protein YtjB/Smp and Pasteurella multocida protein AhpA that affects hemolysin expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMP_2 super family cl11479
Bacterial virulence factor haemolysin; Members of this family of bacterial proteins are ...
 46-159 5.11e-06

Bacterial virulence factor haemolysin; Members of this family of bacterial proteins are membrane proteins that effect the expression of haemolysin under anaerobic conditions.


The actual alignment was detected with superfamily member COG3726:

Pssm-ID: 472199  Cd Length: 208  Bit Score: 47.22  E-value: 5.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489186266  46 YAWVMGMQFRQAMQQQADALGQSLITQTAASATELLVSND-ILSLNVLLNNLVKNPLVAHAAIYSVDQRILAEAGS---- 120
Cdd:COG3726   30 GASYFSLGSQLALSNQVENLARLLVRQAAFSASPLLVNNDkNERLTALLNQLTKESRILDASVYDADGELLAQSGEalsv 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 489186266 121 RPKQSLLGATEGLYST-----PITFQEVIAGHLRISLDMQQFQQ 159
Cdd:COG3726  110 RDRLGLDGPLAGSYFRqqivePIFGKDGPLGFLRVTLDTHVLAT 153
 
Name Accession Description Interval E-value
AhpA COG3726
Uncharacterized membrane protein Smp affecting hemolysin expression [Function unknown];
46-159 5.11e-06

Uncharacterized membrane protein Smp affecting hemolysin expression [Function unknown];


Pssm-ID: 442940  Cd Length: 208  Bit Score: 47.22  E-value: 5.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489186266  46 YAWVMGMQFRQAMQQQADALGQSLITQTAASATELLVSND-ILSLNVLLNNLVKNPLVAHAAIYSVDQRILAEAGS---- 120
Cdd:COG3726   30 GASYFSLGSQLALSNQVENLARLLVRQAAFSASPLLVNNDkNERLTALLNQLTKESRILDASVYDADGELLAQSGEalsv 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 489186266 121 RPKQSLLGATEGLYST-----PITFQEVIAGHLRISLDMQQFQQ 159
Cdd:COG3726  110 RDRLGLDGPLAGSYFRqqivePIFGKDGPLGFLRVTLDTHVLAT 153
 
Name Accession Description Interval E-value
AhpA COG3726
Uncharacterized membrane protein Smp affecting hemolysin expression [Function unknown];
46-159 5.11e-06

Uncharacterized membrane protein Smp affecting hemolysin expression [Function unknown];


Pssm-ID: 442940  Cd Length: 208  Bit Score: 47.22  E-value: 5.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489186266  46 YAWVMGMQFRQAMQQQADALGQSLITQTAASATELLVSND-ILSLNVLLNNLVKNPLVAHAAIYSVDQRILAEAGS---- 120
Cdd:COG3726   30 GASYFSLGSQLALSNQVENLARLLVRQAAFSASPLLVNNDkNERLTALLNQLTKESRILDASVYDADGELLAQSGEalsv 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 489186266 121 RPKQSLLGATEGLYST-----PITFQEVIAGHLRISLDMQQFQQ 159
Cdd:COG3726  110 RDRLGLDGPLAGSYFRqqivePIFGKDGPLGFLRVTLDTHVLAT 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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