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Conserved domains on  [gi|489185850|ref|WP_003095270|]
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MULTISPECIES: AraC family transcriptional regulator [Pseudomonas]

Protein Classification

AraC family transcriptional regulator( domain architecture ID 12117664)

AraC family transcriptional regulator controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

Gene Ontology:  GO:0003677|GO:0006355
PubMed:  7019009|12596232

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arabinose_bd pfam12625
Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial ...
 22-199 9.44e-37

Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].


:

Pssm-ID: 432679  Cd Length: 185  Bit Score: 130.46  E-value: 9.44e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850   22 GCDPDRVLVRVGLPPGGL--PAGRFPHSAQNLFWKAAADECGEEHVGLHLAEHLPAFHGLLLEYLFLSSDTFGAGLRHSL 99
Cdd:pfam12625   1 GLDPAALLRRAGLDPALLadPDARVPLDQYLRLWEAAARELGDPALGLRLGRRLRPGSLGLLGYAALSSPTLGEALDRLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850  100 RYVRLLSDTLQAQL-EVEGERAVLSLGES---PAINRHFPEMLAGAVIRLFGALTEGEFKPLEVQLMNETGAPMERYRAV 175
Cdd:pfam12625  81 RYLRLLSDALELRLeEGEGGLARLRLDVRpipGRRRDFLLELALAALLRLARWLLGRRLPPLRVEFPHPAPADAAEYERL 160

                         170       180
                  ....*....|....*....|....
gi 489185850  176 YGCPTILGMPRYALVFDAAVLDKP 199
Cdd:pfam12625 161 FGCPVRFGAPRNALVFDAADLDRP 184
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
130-330 1.08e-19

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


:

Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 87.14  E-value: 1.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 130 INRHFPEMLAGAVIRLFGALTEGEFKPLEVQLMNETGAPMERYRAVYGCPTILGMPRYALVFDAAVLDKPSRHAAPELLR 209
Cdd:COG2207   55 GGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRAL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 210 MHESLARRQLAEVERLDLVRQVRELIGELLVDGGATLEQVAARLGMPARRLRERL-AMAGVRFNDLVTDYRCRLAKELLL 288
Cdd:COG2207  135 ELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFkEETGTSPKQYLRELRLERAKRLLA 214

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 489185850 289 KTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEFRRRGQQ 330
Cdd:COG2207  215 ETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRLRA 256
 
Name Accession Description Interval E-value
Arabinose_bd pfam12625
Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial ...
 22-199 9.44e-37

Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].


Pssm-ID: 432679  Cd Length: 185  Bit Score: 130.46  E-value: 9.44e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850   22 GCDPDRVLVRVGLPPGGL--PAGRFPHSAQNLFWKAAADECGEEHVGLHLAEHLPAFHGLLLEYLFLSSDTFGAGLRHSL 99
Cdd:pfam12625   1 GLDPAALLRRAGLDPALLadPDARVPLDQYLRLWEAAARELGDPALGLRLGRRLRPGSLGLLGYAALSSPTLGEALDRLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850  100 RYVRLLSDTLQAQL-EVEGERAVLSLGES---PAINRHFPEMLAGAVIRLFGALTEGEFKPLEVQLMNETGAPMERYRAV 175
Cdd:pfam12625  81 RYLRLLSDALELRLeEGEGGLARLRLDVRpipGRRRDFLLELALAALLRLARWLLGRRLPPLRVEFPHPAPADAAEYERL 160

                         170       180
                  ....*....|....*....|....
gi 489185850  176 YGCPTILGMPRYALVFDAAVLDKP 199
Cdd:pfam12625 161 FGCPVRFGAPRNALVFDAADLDRP 184
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
130-330 1.08e-19

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 87.14  E-value: 1.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 130 INRHFPEMLAGAVIRLFGALTEGEFKPLEVQLMNETGAPMERYRAVYGCPTILGMPRYALVFDAAVLDKPSRHAAPELLR 209
Cdd:COG2207   55 GGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRAL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 210 MHESLARRQLAEVERLDLVRQVRELIGELLVDGGATLEQVAARLGMPARRLRERL-AMAGVRFNDLVTDYRCRLAKELLL 288
Cdd:COG2207  135 ELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFkEETGTSPKQYLRELRLERAKRLLA 214

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 489185850 289 KTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEFRRRGQQ 330
Cdd:COG2207  215 ETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRLRA 256
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
245-325 1.60e-19

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 81.45  E-value: 1.60e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850   245 TLEQVAARLGMPARRLRERL-AMAGVRFNDLVTDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVE 323
Cdd:smart00342   3 TLEDLAEALGVSPRHLQRLFkKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPSE 82


                   ..
gi 489185850   324 FR 325
Cdd:smart00342  83 YR 84
HTH_18 pfam12833
Helix-turn-helix domain;
249-327 5.56e-17

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 74.55  E-value: 5.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850  249 VAARLGMPARRLRERLAMA-GVRFNDLVTDYRCRLAKELLLK-TDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEFRR 326
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRElGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80


                  .
gi 489185850  327 R 327
Cdd:pfam12833  81 R 81
PRK10371 PRK10371
transcriptional regulator MelR;
228-332 5.75e-07

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 50.20  E-value: 5.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 228 VRQVRELIGELLvDGGATLEQVAARLGmparrLRERLAMA------GVRFNDLVTDYRCRLAKELLLKTDERIEVIVERT 301
Cdd:PRK10371 193 VSQMLGFIAENY-DQALTINDVAEHVK-----LNANYAMGifqrvmQLTMKQYITAMRINHVRALLSDTDKSILDIALTA 266

                         90       100       110
                 ....*....|....*....|....*....|.
gi 489185850 302 GFSEPSTFYRAFKRWVGETPVEFRRRGQQGR 332
Cdd:PRK10371 267 GFRSSSRFYSTFGKYVGMSPQQYRKLSQQRR 297
 
Name Accession Description Interval E-value
Arabinose_bd pfam12625
Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial ...
 22-199 9.44e-37

Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].


Pssm-ID: 432679  Cd Length: 185  Bit Score: 130.46  E-value: 9.44e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850   22 GCDPDRVLVRVGLPPGGL--PAGRFPHSAQNLFWKAAADECGEEHVGLHLAEHLPAFHGLLLEYLFLSSDTFGAGLRHSL 99
Cdd:pfam12625   1 GLDPAALLRRAGLDPALLadPDARVPLDQYLRLWEAAARELGDPALGLRLGRRLRPGSLGLLGYAALSSPTLGEALDRLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850  100 RYVRLLSDTLQAQL-EVEGERAVLSLGES---PAINRHFPEMLAGAVIRLFGALTEGEFKPLEVQLMNETGAPMERYRAV 175
Cdd:pfam12625  81 RYLRLLSDALELRLeEGEGGLARLRLDVRpipGRRRDFLLELALAALLRLARWLLGRRLPPLRVEFPHPAPADAAEYERL 160

                         170       180
                  ....*....|....*....|....
gi 489185850  176 YGCPTILGMPRYALVFDAAVLDKP 199
Cdd:pfam12625 161 FGCPVRFGAPRNALVFDAADLDRP 184
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
130-330 1.08e-19

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 87.14  E-value: 1.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 130 INRHFPEMLAGAVIRLFGALTEGEFKPLEVQLMNETGAPMERYRAVYGCPTILGMPRYALVFDAAVLDKPSRHAAPELLR 209
Cdd:COG2207   55 GGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRAL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 210 MHESLARRQLAEVERLDLVRQVRELIGELLVDGGATLEQVAARLGMPARRLRERL-AMAGVRFNDLVTDYRCRLAKELLL 288
Cdd:COG2207  135 ELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFkEETGTSPKQYLRELRLERAKRLLA 214

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 489185850 289 KTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEFRRRGQQ 330
Cdd:COG2207  215 ETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRLRA 256
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
245-325 1.60e-19

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 81.45  E-value: 1.60e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850   245 TLEQVAARLGMPARRLRERL-AMAGVRFNDLVTDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVE 323
Cdd:smart00342   3 TLEDLAEALGVSPRHLQRLFkKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPSE 82


                   ..
gi 489185850   324 FR 325
Cdd:smart00342  83 YR 84
HTH_18 pfam12833
Helix-turn-helix domain;
249-327 5.56e-17

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 74.55  E-value: 5.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850  249 VAARLGMPARRLRERLAMA-GVRFNDLVTDYRCRLAKELLLK-TDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEFRR 326
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRElGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80


                  .
gi 489185850  327 R 327
Cdd:pfam12833  81 R 81
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 245-333 2.15e-11

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 63.64  E-value: 2.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 245 TLEQVAARLGMPARRLrERL--AMAGVRFNDLVTDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGETPV 322
Cdd:COG4977  228 SVDELARRAGMSPRTL-ERRfrAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSASHFRRAFRRRFGVSPS 306

                         90
                 ....*....|.
gi 489185850 323 EFRRRGQQGRG 333
Cdd:COG4977  307 AYRRRFRARAA 317
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 223-328 5.43e-09

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 56.60  E-value: 5.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 223 ERLDLVRQVRELIgELLVDGGATLEQVAARLGMPARRLRERL-AMAGVRFNDLVTDYRCRLAKELLlKTDERIEVIVERT 301
Cdd:COG2169   81 PRADLVARACRLI-EAGAEDRPSLEDLAARLGLSPRHLRRLFkAHTGVTPKAYARARRLLRARQLL-QTGLSVTDAAYAA 158

                         90       100
                 ....*....|....*....|....*..
gi 489185850 302 GFSEPSTFYRAFKRWVGETPVEFRRRG 328
Cdd:COG2169  159 GFGSLSRFYEAFKKLLGMTPSAYRRGG 185
PRK10371 PRK10371
transcriptional regulator MelR;
228-332 5.75e-07

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 50.20  E-value: 5.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 228 VRQVRELIGELLvDGGATLEQVAARLGmparrLRERLAMA------GVRFNDLVTDYRCRLAKELLLKTDERIEVIVERT 301
Cdd:PRK10371 193 VSQMLGFIAENY-DQALTINDVAEHVK-----LNANYAMGifqrvmQLTMKQYITAMRINHVRALLSDTDKSILDIALTA 266

                         90       100       110
                 ....*....|....*....|....*....|.
gi 489185850 302 GFSEPSTFYRAFKRWVGETPVEFRRRGQQGR 332
Cdd:PRK10371 267 GFRSSSRFYSTFGKYVGMSPQQYRKLSQQRR 297
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
245-327 3.19e-06

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 48.05  E-value: 3.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 245 TLEQVAARLGMPARRL----RERLAMAGVRFNDlvtDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGET 320
Cdd:PRK10572 201 DIESVAQHVCLSPSRLahlfRQQLGISVLRWRE---DQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGAS 277


                 ....*..
gi 489185850 321 PVEFRRR 327
Cdd:PRK10572 278 PSEFRAR 284
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 288-326 5.52e-06

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 42.53  E-value: 5.52e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 489185850  288 LKTDERIEVIVERTGFSePSTFYRAFKRWVGETPVEFRR 326
Cdd:pfam00165   5 LSTNLTIADIADELGFS-RSYFSRLFKKYTGVTPSQYRH 42
ftrA PRK09393
transcriptional activator FtrA; Provisional
 245-327 1.05e-05

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 46.50  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 245 TLEQVAARLGMPARRLRERL-AMAGVRFNDLVTDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVE 323
Cdd:PRK09393 236 TVASLAARAAMSPRTFLRRFeAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSEESLRHHFRRRAATSPAA 315


                 ....
gi 489185850 324 FRRR 327
Cdd:PRK09393 316 YRKR 319
PRK09978 PRK09978
DNA-binding transcriptional regulator GadX; Provisional
 245-331 4.05e-05

DNA-binding transcriptional regulator GadX; Provisional


Pssm-ID: 137624 [Multi-domain]  Cd Length: 274  Bit Score: 44.53  E-value: 4.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 245 TLEQVAARLGMPARRLRERLAMAGVRFNDLVTDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEF 324
Cdd:PRK09978 160 TLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEY 239


                 ....*..
gi 489185850 325 RRRGQQG 331
Cdd:PRK09978 240 QERSAQG 246
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 229-327 9.81e-05

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 43.48  E-value: 9.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185850 229 RQVRELIGELLVDGGATLEQVAARLGMPARRLRERLAMAGvrfnDLVTDY--RCRL---AKEL--LLKtDERIEVIVERT 301
Cdd:PRK09685 200 QKVVALIDQSIQEEILRPEWIAGELGISVRSLYRLFAEQG----LVVAQYirNRRLdrcADDLrpAAD-DEKITSIAYKW 274

                         90       100
                 ....*....|....*....|....*.
gi 489185850 302 GFSEPSTFYRAFKRWVGETPVEFRRR 327
Cdd:PRK09685 275 GFSDSSHFSTAFKQRFGVSPGEYRRK 300
PRK15044 PRK15044
transcriptional regulator SirC; Provisional
 248-326 2.04e-04

transcriptional regulator SirC; Provisional


Pssm-ID: 185004 [Multi-domain]  Cd Length: 295  Bit Score: 42.33  E-value: 2.04e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489185850 248 QVAARLGMPARRLRERLAMAGVRFNDLVTDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEFRR 326
Cdd:PRK15044 213 EVAGKLFMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPLSFMR 291
PRK15185 PRK15185
transcriptional regulator HilD; Provisional
 246-324 2.55e-04

transcriptional regulator HilD; Provisional


Pssm-ID: 185107 [Multi-domain]  Cd Length: 309  Bit Score: 42.29  E-value: 2.55e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489185850 246 LEQVAARLGMPARRLRERLAMAGVRFNDLVTDYRCRLAKELLLKTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEF 324
Cdd:PRK15185 225 LTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTF 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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