NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489185289|ref|WP_003094713|]
View 

MULTISPECIES: type 4a fimbrial biogenesis protein PilY2 [Pseudomonas]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Fimbrial_PilY2 pfam14481
Type 4 fimbrial biogenesis protein PilY2; Members of this family were experimentally shown to ...
 1-105 6.52e-62

Type 4 fimbrial biogenesis protein PilY2; Members of this family were experimentally shown to be involved in fimbrial biogenesis, but its exact role appears to be unknown.


:

Pssm-ID: 373090  Cd Length: 105  Bit Score: 183.99  E-value: 6.52e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185289    1 MKVLPMLLALAVPGLCWAEEPQTFEGAGVVFEVQVEKNLVDIDHRLYRLPNSTVRNGMPSLFQVKPGSVVSYSGTVSQPW 80
Cdd:pfam14481   1 KSLIPSLLALLVMTLAFTANAETFEISGAVQRVQLETNLITIDGKRYQLPNSTVPNGGPVIYQLRPGSVIAASGTYATPF 80

                          90       100
                  ....*....|....*....|....*
gi 489185289   81 STITDIYIHKQMSEQELAEMIEKEQ 105
Cdd:pfam14481  81 SKIDSIYILRQPSPEEQIQIQSEMQ 105
 
Name Accession Description Interval E-value
Fimbrial_PilY2 pfam14481
Type 4 fimbrial biogenesis protein PilY2; Members of this family were experimentally shown to ...
 1-105 6.52e-62

Type 4 fimbrial biogenesis protein PilY2; Members of this family were experimentally shown to be involved in fimbrial biogenesis, but its exact role appears to be unknown.


Pssm-ID: 373090  Cd Length: 105  Bit Score: 183.99  E-value: 6.52e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185289    1 MKVLPMLLALAVPGLCWAEEPQTFEGAGVVFEVQVEKNLVDIDHRLYRLPNSTVRNGMPSLFQVKPGSVVSYSGTVSQPW 80
Cdd:pfam14481   1 KSLIPSLLALLVMTLAFTANAETFEISGAVQRVQLETNLITIDGKRYQLPNSTVPNGGPVIYQLRPGSVIAASGTYATPF 80

                          90       100
                  ....*....|....*....|....*
gi 489185289   81 STITDIYIHKQMSEQELAEMIEKEQ 105
Cdd:pfam14481  81 SKIDSIYILRQPSPEEQIQIQSEMQ 105
 
Name Accession Description Interval E-value
Fimbrial_PilY2 pfam14481
Type 4 fimbrial biogenesis protein PilY2; Members of this family were experimentally shown to ...
 1-105 6.52e-62

Type 4 fimbrial biogenesis protein PilY2; Members of this family were experimentally shown to be involved in fimbrial biogenesis, but its exact role appears to be unknown.


Pssm-ID: 373090  Cd Length: 105  Bit Score: 183.99  E-value: 6.52e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185289    1 MKVLPMLLALAVPGLCWAEEPQTFEGAGVVFEVQVEKNLVDIDHRLYRLPNSTVRNGMPSLFQVKPGSVVSYSGTVSQPW 80
Cdd:pfam14481   1 KSLIPSLLALLVMTLAFTANAETFEISGAVQRVQLETNLITIDGKRYQLPNSTVPNGGPVIYQLRPGSVIAASGTYATPF 80

                          90       100
                  ....*....|....*....|....*
gi 489185289   81 STITDIYIHKQMSEQELAEMIEKEQ 105
Cdd:pfam14481  81 SKIDSIYILRQPSPEEQIQIQSEMQ 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH