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Conserved domains on  [gi|489183293|ref|WP_003092732|]
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MULTISPECIES: TRAP transporter small permease [Pseudomonas]

Protein Classification

TRAP transporter small permease( domain architecture ID 10006919)

TRAP transporter small permease is a component of a tripartite ATP-independent periplasmic transporter that facilitates the transport of a variety of solutes including ectoine; similar to Rhodobacter capsulatus DctQ, the small integral membrane protein of the C4-dicarboxylate TRAP transporter; TRAP transporter small permease is a component of a tripartite ATP-independent periplasmic transporter that facilitates the transport of one or more from a variety of solutes

Gene Ontology:  GO:0016020|GO:0022857|GO:0015740|GO:0005886|GO:0031317
PubMed:  20584082|9287004|11524131|10627041
TCDB:  2.A.56

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
 28-133 9.36e-17

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


:

Pssm-ID: 442324  Cd Length: 168  Bit Score: 73.03  E-value: 9.36e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183293  28 IYGVFARYLLGSSPIWMDELARYLIIGAVMLALGAVWMEGGHMRVNLLEQRLPPRLAQVLRLYQWLLALAFFAFAAWVST 107
Cdd:COG3090   31 FAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRLPPRARRVLDLLALLLVLAFLALLAWYGW 110

                         90       100
                 ....*....|....*....|....*...
gi 489183293 108 RYALNAGRF--RSLGLGVSRTWPLLSLP 133
Cdd:COG3090  111 ELVLRSWERgqTSPALGIPMWWVYLALP 138
 
Name Accession Description Interval E-value
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
 28-133 9.36e-17

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


Pssm-ID: 442324  Cd Length: 168  Bit Score: 73.03  E-value: 9.36e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183293  28 IYGVFARYLLGSSPIWMDELARYLIIGAVMLALGAVWMEGGHMRVNLLEQRLPPRLAQVLRLYQWLLALAFFAFAAWVST 107
Cdd:COG3090   31 FAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRLPPRARRVLDLLALLLVLAFLALLAWYGW 110

                         90       100
                 ....*....|....*....|....*...
gi 489183293 108 RYALNAGRF--RSLGLGVSRTWPLLSLP 133
Cdd:COG3090  111 ELVLRSWERgqTSPALGIPMWWVYLALP 138
DctQ pfam04290
Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the ...
 28-133 8.52e-11

Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.


Pssm-ID: 427843  Cd Length: 132  Bit Score: 56.52  E-value: 8.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183293   28 IYGVFARYLLGSSPIWMDELARYLIIGAVMLALGAVWMEGGHMRVNLLEQRLPPRLAQVLRLYQWLLALAFFAFAAWVST 107
Cdd:pfam04290   6 FAQVFSRYLFNSPLPWTEELARYLFVWLVFLGAALALRRGSHIRVDLLVDRLPPRVRRLLDLIADLLVLAFAAVLAWAGW 85

                          90       100
                  ....*....|....*....|....*..
gi 489183293  108 RYALNAGRFRSLG-LGVSRTWPLLSLP 133
Cdd:pfam04290  86 LVVALLGGGETSPaLGLPLWWVYLALP 112
 
Name Accession Description Interval E-value
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
 28-133 9.36e-17

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


Pssm-ID: 442324  Cd Length: 168  Bit Score: 73.03  E-value: 9.36e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183293  28 IYGVFARYLLGSSPIWMDELARYLIIGAVMLALGAVWMEGGHMRVNLLEQRLPPRLAQVLRLYQWLLALAFFAFAAWVST 107
Cdd:COG3090   31 FAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRLPPRARRVLDLLALLLVLAFLALLAWYGW 110

                         90       100
                 ....*....|....*....|....*...
gi 489183293 108 RYALNAGRF--RSLGLGVSRTWPLLSLP 133
Cdd:COG3090  111 ELVLRSWERgqTSPALGIPMWWVYLALP 138
DctQ pfam04290
Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the ...
 28-133 8.52e-11

Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.


Pssm-ID: 427843  Cd Length: 132  Bit Score: 56.52  E-value: 8.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183293   28 IYGVFARYLLGSSPIWMDELARYLIIGAVMLALGAVWMEGGHMRVNLLEQRLPPRLAQVLRLYQWLLALAFFAFAAWVST 107
Cdd:pfam04290   6 FAQVFSRYLFNSPLPWTEELARYLFVWLVFLGAALALRRGSHIRVDLLVDRLPPRVRRLLDLIADLLVLAFAAVLAWAGW 85

                          90       100
                  ....*....|....*....|....*..
gi 489183293  108 RYALNAGRFRSLG-LGVSRTWPLLSLP 133
Cdd:pfam04290  86 LVVALLGGGETSPaLGLPLWWVYLALP 112
FcbT2 COG4665
TRAP-type mannitol/chloroaromatic compound transport system, small permease component ...
 28-89 3.00e-10

TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443702  Cd Length: 170  Bit Score: 55.58  E-value: 3.00e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489183293  28 IYGVFARYLLGSSPIWMDELARYLIIGAVMLALGAVWMEGGHMRVNLLEQRLPPRLAQVLRL 89
Cdd:COG4665   32 VYEVVLRYLFNAPSIWALELQWYLFAAIFLLGAAYTLRRGGHVRVDILYGRLSPRTRAWLDL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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