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Conserved domains on  [gi|489182835|ref|WP_003092280|]
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MULTISPECIES: VirB3 family type IV secretion system protein [Pseudomonadota]

Protein Classification

TrbD family protein( domain architecture ID 10009156)

TrbD family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TrbD COG5268
Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular ...
 4-89 9.93e-40

Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 444081  Cd Length: 88  Bit Score: 126.17  E-value: 9.93e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489182835  4 ATDLPGFEVPLHRSLTEPILLGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVGHSLAVWGARVDPQFMQVFARHIKH 83
Cdd:COG5268   3 EEAVEGFRVPVHRALTRPILLGGAPRELAILNGTLAAALGLGLQLWIVGLALWLVGHALAVWMAKRDPQFFKVYLRHLRY 82


                ....*.
gi 489182835 84 RPLLDV 89
Cdd:COG5268  83 KAYYRP 88
 
Name Accession Description Interval E-value
TrbD COG5268
Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular ...
 4-89 9.93e-40

Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444081  Cd Length: 88  Bit Score: 126.17  E-value: 9.93e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489182835  4 ATDLPGFEVPLHRSLTEPILLGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVGHSLAVWGARVDPQFMQVFARHIKH 83
Cdd:COG5268   3 EEAVEGFRVPVHRALTRPILLGGAPRELAILNGTLAAALGLGLQLWIVGLALWLVGHALAVWMAKRDPQFFKVYLRHLRY 82


                ....*.
gi 489182835 84 RPLLDV 89
Cdd:COG5268  83 KAYYRP 88
PRK13823 PRK13823
conjugal transfer protein TrbD; Provisional
 12-85 3.76e-07

conjugal transfer protein TrbD; Provisional


Pssm-ID: 184348  Cd Length: 94  Bit Score: 43.82  E-value: 3.76e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489182835 12 VPLHRSLTEPILLGGAPRTVAIANGTLAAAVGLGLQLWIP---GVVLWIVghslAVWG----ARVDPQFMQVFARHIKHR 84
Cdd:PRK13823  6 IPIRRAGNRPNLFMGGDRELVMFSGLLAGILIFVAQTWRAalfGIALWFG----ALFAlrlmAKADPKMRHVYLRHRRYK 81


                .
gi 489182835 85 P 85
Cdd:PRK13823 82 P 82
VirB3 pfam05101
Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory ...
 12-85 9.01e-07

Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.


Pssm-ID: 428303  Cd Length: 82  Bit Score: 42.61  E-value: 9.01e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489182835  12 VPLHRSLTEPILLGGAPRTVAIANGTLAAAVGL-GLQLWIpgVVLWIVGHSLAVWGARVDPQFMQVFARHIKHRP 85
Cdd:pfam05101  1 DPLFKALTRPAMFLGVPLELFLLNGMVSVILFLvGLSLWY--LLLAPPLHLVLRLIAKRDPRMFRVLLLWLQTRP 73
 
Name Accession Description Interval E-value
TrbD COG5268
Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular ...
 4-89 9.93e-40

Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444081  Cd Length: 88  Bit Score: 126.17  E-value: 9.93e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489182835  4 ATDLPGFEVPLHRSLTEPILLGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVGHSLAVWGARVDPQFMQVFARHIKH 83
Cdd:COG5268   3 EEAVEGFRVPVHRALTRPILLGGAPRELAILNGTLAAALGLGLQLWIVGLALWLVGHALAVWMAKRDPQFFKVYLRHLRY 82


                ....*.
gi 489182835 84 RPLLDV 89
Cdd:COG5268  83 KAYYRP 88
PRK13823 PRK13823
conjugal transfer protein TrbD; Provisional
 12-85 3.76e-07

conjugal transfer protein TrbD; Provisional


Pssm-ID: 184348  Cd Length: 94  Bit Score: 43.82  E-value: 3.76e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489182835 12 VPLHRSLTEPILLGGAPRTVAIANGTLAAAVGLGLQLWIP---GVVLWIVghslAVWG----ARVDPQFMQVFARHIKHR 84
Cdd:PRK13823  6 IPIRRAGNRPNLFMGGDRELVMFSGLLAGILIFVAQTWRAalfGIALWFG----ALFAlrlmAKADPKMRHVYLRHRRYK 81


                .
gi 489182835 85 P 85
Cdd:PRK13823 82 P 82
VirB3 pfam05101
Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory ...
 12-85 9.01e-07

Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.


Pssm-ID: 428303  Cd Length: 82  Bit Score: 42.61  E-value: 9.01e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489182835  12 VPLHRSLTEPILLGGAPRTVAIANGTLAAAVGL-GLQLWIpgVVLWIVGHSLAVWGARVDPQFMQVFARHIKHRP 85
Cdd:pfam05101  1 DPLFKALTRPAMFLGVPLELFLLNGMVSVILFLvGLSLWY--LLLAPPLHLVLRLIAKRDPRMFRVLLLWLQTRP 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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