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Conserved domains on  [gi|489180023|ref|WP_003089509|]
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MULTISPECIES: type VI secretion system tip protein VgrG [Pseudomonas]

Protein Classification

type VI secretion system tip protein VgrG( domain architecture ID 12859174)

type VI secretion system tip protein VgrG, a core component and effector of type VI secretion systems (T6SSs) that are involved in pathogenicity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VI_Rhs_Vgr TIGR03361
type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs ...
 20-504 0e+00

type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.


:

Pssm-ID: 274542 [Multi-domain]  Cd Length: 513  Bit Score: 719.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   20 ALFPERLAGEERLNALPGWELLGYSASP-LALDGAIATHLTATLHNDAD-QRPLDGLVAEIRQLPGDASAERYQVLLRPW 97
Cdd:TIGR03361  11 ALQVLSFSGDEALSRLFSFRLELVSADPdIDLEDLLGQPATLTLGRDGGgPRYFHGIVTRFEQGGTGRRLTRYRLTLVPW 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   98 LWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVSRLLEEDGIFWFFTHAAGKHT 177
Cdd:TIGR03361  91 LWLLTLRRDSRIFQNKSVPEIITEVLKEHGITDFRFRLSKSYPPREYCVQYRESDLDFVSRLLEEEGIFYYFEHTEDGHT 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  178 LVLADSNDAFPPIPnGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGTSLYSQAEAVSGAAGV----- 252
Cdd:TIGR03361 171 LVLGDDASAHAPLP-GASLPYNPDSGGVADRPVISQWTYRRQVRPGQVALRDYDFKKPAASLEAQASADEQGHQApdleh 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  253 YQHPGGYTAKAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDWVLTSVTH-----------DA 321
Cdd:TIGR03361 250 YDYPGRFKDQERGKRLARVRLEALRADAKRAEGESNCRRLAPGYLFTLSGHPRAALNREYLVVSVHHhgrqpqvleesGG 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  322 SHAHYRNRFEAIPKATAYRPARVTPKPRMH-TQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWS 400
Cdd:TIGR03361 330 SGAGYRNSFQCIPATVPFRPPRRTPKPRIDgPQTATVVGPAGEEIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQPWA 409

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  401 GKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVF 480
Cdd:TIGR03361 410 GNGWGSVAIPRVGQEVVVDFLEGDPDRPIVTGRVYNAENMPPYSLPANKTQSGFRSRSSKGGGGFNELRFEDKAGAEEIY 489

                         490       500
                  ....*....|....*....|....
gi 489180023  481 LQAQKDFNVNVLNDSTASIGHDET 504
Cdd:TIGR03361 490 LHAQRDMNTEVENDSTHTVGNNRT 513
5 super family cl33691
baseplate hub subunit and tail lysozyme; Provisional
 463-591 2.17e-09

baseplate hub subunit and tail lysozyme; Provisional


The actual alignment was detected with superfamily member PHA02596:

Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 60.54  E-value: 2.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 463 GGFNELRFEDKKDAEEV---FLQAQKDFNVNVLNDSTASIGHDETLTVQNARTRTVK-------EGDETVTLE------- 525
Cdd:PHA02596 420 GTYEEIRPDGTRVVKIVgddYYIVKQDRNVNVKGNLKVVVEGDAIYYNMGNVLQTIDgnvtifvRGNVTKTVEgngtlyv 499

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489180023 526 KGKRTVTIQtGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGNFELTVDGNLTIKVSGTLALQSG 591
Cdd:PHA02596 500 KGNVTVQVD-GNLDATVKGNATTLVEGNQTNTVNGNYKLKVEGNFDMTVGGNWSEQMAGMSSIASG 564
 
Name Accession Description Interval E-value
VI_Rhs_Vgr TIGR03361
type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs ...
 20-504 0e+00

type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.


Pssm-ID: 274542 [Multi-domain]  Cd Length: 513  Bit Score: 719.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   20 ALFPERLAGEERLNALPGWELLGYSASP-LALDGAIATHLTATLHNDAD-QRPLDGLVAEIRQLPGDASAERYQVLLRPW 97
Cdd:TIGR03361  11 ALQVLSFSGDEALSRLFSFRLELVSADPdIDLEDLLGQPATLTLGRDGGgPRYFHGIVTRFEQGGTGRRLTRYRLTLVPW 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   98 LWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVSRLLEEDGIFWFFTHAAGKHT 177
Cdd:TIGR03361  91 LWLLTLRRDSRIFQNKSVPEIITEVLKEHGITDFRFRLSKSYPPREYCVQYRESDLDFVSRLLEEEGIFYYFEHTEDGHT 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  178 LVLADSNDAFPPIPnGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGTSLYSQAEAVSGAAGV----- 252
Cdd:TIGR03361 171 LVLGDDASAHAPLP-GASLPYNPDSGGVADRPVISQWTYRRQVRPGQVALRDYDFKKPAASLEAQASADEQGHQApdleh 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  253 YQHPGGYTAKAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDWVLTSVTH-----------DA 321
Cdd:TIGR03361 250 YDYPGRFKDQERGKRLARVRLEALRADAKRAEGESNCRRLAPGYLFTLSGHPRAALNREYLVVSVHHhgrqpqvleesGG 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  322 SHAHYRNRFEAIPKATAYRPARVTPKPRMH-TQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWS 400
Cdd:TIGR03361 330 SGAGYRNSFQCIPATVPFRPPRRTPKPRIDgPQTATVVGPAGEEIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQPWA 409

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  401 GKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVF 480
Cdd:TIGR03361 410 GNGWGSVAIPRVGQEVVVDFLEGDPDRPIVTGRVYNAENMPPYSLPANKTQSGFRSRSSKGGGGFNELRFEDKAGAEEIY 489

                         490       500
                  ....*....|....*....|....
gi 489180023  481 LQAQKDFNVNVLNDSTASIGHDET 504
Cdd:TIGR03361 490 LHAQRDMNTEVENDSTHTVGNNRT 513
VgrG COG3501
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-668 0e+00

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 694.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   1 MPRPTDSTTsLSL-TASALAALFPERLAGEERLNALPGWELLGYSASP-LALDGAIATHLTATLH-NDADQRPLDGLVAE 77
Cdd:COG3501    1 MSLSQSNRL-LTLeTPLGDDALLVLRFSGEEALSRPFEFELELLSEDAdLDLDALLGKPATLTLRtADGPERYFHGIVTE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  78 IRQLPGDASAERYQVLLRPWLWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVS 157
Cdd:COG3501   80 FEQLGTDGGLARYRLTLVPWLWLLTLRRDSRIFQDKSVPDIVEEVLAEYGLAAFEFRLSGSYPPREYCVQYRESDLDFVS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 158 RLLEEDGIFWFFTHAAGKHTLVLADSNDAFPPIPnGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGT 237
Cdd:COG3501  160 RLLEEEGIYYYFEHEEGGHTLVLADDPSAHPPLP-GATLPYHPRSGADEEEDSITRWRVRRRVRPGKVTLRDYDFKKPAA 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 238 SLYSQAEAVSGAAG----VYQHPGGYTA-KAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDW 312
Cdd:COG3501  239 DLEASASSPRDGDEgdleVYDYPGRYTAdPAEGERLARLRLEALRARAVRVEGESNVRGLAPGRRFTLTGHPRADLNGEY 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 313 VLTSVTHDAS----------HAHYRNRFEAIPKATAYRPARVTPKPRMH-TQTALVVGKAGEEIWTDQYGRIKIQFPWDR 381
Cdd:COG3501  319 LVTSVTHEGSqnlysgaggeDGGYRNRFTAIPADVPFRPPRRTPKPRIAgPQTATVVGPAGEEIHTDEYGRVKVQFHWDR 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 382 DGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKg 461
Cdd:COG3501  399 EGKKDENSSCWVRVAQPWAGAGWGGHFIPRVGQEVLVAFLDGDPDRPIVTGRVYNGANMPPYTLPANKTRSGIRTRSSP- 477

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 462 GGGFNELRFEDKKDAEEVFLQAQKDFNVNVLNDSTASIGHDETLTVQNARTRTVKeGDETVTLeKGKRTVTIqTGSDSLD 541
Cdd:COG3501  478 GGGFNELRFDDKAGQEEIFLHAEKDMNTLVDNDETITVGNDRTEEVGTDETGTVA-GNQGLTV-SGDQTVVV-GGNQTLV 554

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 542 VKDTRTVTVGADQTHSTGGNYSHKVSGNFELTVDGNLTIKVSGTLALQSGGSLTLKSDADLAAQAGTSLTSKAGTSLTNQ 621
Cdd:COG3501  555 VGGARTLVVGGNLAAVVGGAAATAGGAQATLVAGALLLLAAGGALTTVGGGGTTTGGGAAATAGGGGAGAAAGGAATAAA 634

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*..
gi 489180023 622 AGTSLTNKAGTSLTNDAGVSLTNKAGAEQTVDGGGMLTIKGGLVKVN 668
Cdd:COG3501  635 GAAATSAAGGASSAAAAAGGAAGAGGGGLAAAGGGGAAAAGGAGAGG 681
Phage_GPD pfam05954
Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D ...
 31-322 6.36e-104

Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences. This protein forms the phage central baseplate hub.


Pssm-ID: 428689  Cd Length: 302  Bit Score: 318.49  E-value: 6.36e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   31 RLNALPGWELLGYSASP-LALDGAIATHLTATLHNDAD-QRPLDGLVAEIRQLPGDASAERYQVLLRPWLWWLTLASNNR 108
Cdd:pfam05954   1 GLSRLFEFELTLLSDDPdIDLKALLGQPVTVSIELDGGgPRYFHGIVTEFEQVGSDGRLTRYRLTLVPWLWLLTLRRDSR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  109 VFQNLATSDIVTQVFDQHGFSD-YQLQLSGSYQPREYCVQYGESDLAFVSRLLEEDGIFWFFTHAAGKHTLVLADSNDAF 187
Cdd:pfam05954  81 IFQNKTVPDILEAVLGEHGIAVaFRFRLTRSYPPREYCVQYRESDLAFVSRLLEEEGIFYFFEHAEGSHTLVLADDSSAL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  188 PPIPNGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGTSLYSQAEAVSGAAG----VYQHPGGYTAKA 263
Cdd:pfam05954 161 PPSAGGPSLPYHPPSGTEAEGDHITRFTARRRLRPGTVTLRDYDYKKPRADLSAVAAAPQGAAGsayeVYDYPGRYDSSA 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  264 QGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGH-DDDSLNIDWVLTSVTHDAS 322
Cdd:pfam05954 241 EGERLARLRLEALRARARRFSGESNVRGLAPGRRFTLSGHpRRAAADREYLITRVEHTGS 300
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 463-591 2.17e-09

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 60.54  E-value: 2.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 463 GGFNELRFEDKKDAEEV---FLQAQKDFNVNVLNDSTASIGHDETLTVQNARTRTVK-------EGDETVTLE------- 525
Cdd:PHA02596 420 GTYEEIRPDGTRVVKIVgddYYIVKQDRNVNVKGNLKVVVEGDAIYYNMGNVLQTIDgnvtifvRGNVTKTVEgngtlyv 499

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489180023 526 KGKRTVTIQtGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGNFELTVDGNLTIKVSGTLALQSG 591
Cdd:PHA02596 500 KGNVTVQVD-GNLDATVKGNATTLVEGNQTNTVNGNYKLKVEGNFDMTVGGNWSEQMAGMSSIASG 564
Gp5_C pfam06715
Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the ...
 560-583 1.03e-04

Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane. Structurally three copies of the repeated region trimerize to form a beta solenoid type structure. This family also includes repeats from bacterial Vgr proteins.


Pssm-ID: 310962 [Multi-domain]  Cd Length: 24  Bit Score: 39.57  E-value: 1.03e-04
                          10        20
                  ....*....|....*....|....
gi 489180023  560 GNYSHKVSGNFELTVDGNLTIKVS 583
Cdd:pfam06715   1 GNETETVGGNRTVTVGGNETETVG 24
 
Name Accession Description Interval E-value
VI_Rhs_Vgr TIGR03361
type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs ...
 20-504 0e+00

type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.


Pssm-ID: 274542 [Multi-domain]  Cd Length: 513  Bit Score: 719.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   20 ALFPERLAGEERLNALPGWELLGYSASP-LALDGAIATHLTATLHNDAD-QRPLDGLVAEIRQLPGDASAERYQVLLRPW 97
Cdd:TIGR03361  11 ALQVLSFSGDEALSRLFSFRLELVSADPdIDLEDLLGQPATLTLGRDGGgPRYFHGIVTRFEQGGTGRRLTRYRLTLVPW 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   98 LWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVSRLLEEDGIFWFFTHAAGKHT 177
Cdd:TIGR03361  91 LWLLTLRRDSRIFQNKSVPEIITEVLKEHGITDFRFRLSKSYPPREYCVQYRESDLDFVSRLLEEEGIFYYFEHTEDGHT 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  178 LVLADSNDAFPPIPnGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGTSLYSQAEAVSGAAGV----- 252
Cdd:TIGR03361 171 LVLGDDASAHAPLP-GASLPYNPDSGGVADRPVISQWTYRRQVRPGQVALRDYDFKKPAASLEAQASADEQGHQApdleh 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  253 YQHPGGYTAKAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDWVLTSVTH-----------DA 321
Cdd:TIGR03361 250 YDYPGRFKDQERGKRLARVRLEALRADAKRAEGESNCRRLAPGYLFTLSGHPRAALNREYLVVSVHHhgrqpqvleesGG 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  322 SHAHYRNRFEAIPKATAYRPARVTPKPRMH-TQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWS 400
Cdd:TIGR03361 330 SGAGYRNSFQCIPATVPFRPPRRTPKPRIDgPQTATVVGPAGEEIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQPWA 409

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  401 GKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVF 480
Cdd:TIGR03361 410 GNGWGSVAIPRVGQEVVVDFLEGDPDRPIVTGRVYNAENMPPYSLPANKTQSGFRSRSSKGGGGFNELRFEDKAGAEEIY 489

                         490       500
                  ....*....|....*....|....
gi 489180023  481 LQAQKDFNVNVLNDSTASIGHDET 504
Cdd:TIGR03361 490 LHAQRDMNTEVENDSTHTVGNNRT 513
VgrG COG3501
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-668 0e+00

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 694.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   1 MPRPTDSTTsLSL-TASALAALFPERLAGEERLNALPGWELLGYSASP-LALDGAIATHLTATLH-NDADQRPLDGLVAE 77
Cdd:COG3501    1 MSLSQSNRL-LTLeTPLGDDALLVLRFSGEEALSRPFEFELELLSEDAdLDLDALLGKPATLTLRtADGPERYFHGIVTE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  78 IRQLPGDASAERYQVLLRPWLWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVS 157
Cdd:COG3501   80 FEQLGTDGGLARYRLTLVPWLWLLTLRRDSRIFQDKSVPDIVEEVLAEYGLAAFEFRLSGSYPPREYCVQYRESDLDFVS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 158 RLLEEDGIFWFFTHAAGKHTLVLADSNDAFPPIPnGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGT 237
Cdd:COG3501  160 RLLEEEGIYYYFEHEEGGHTLVLADDPSAHPPLP-GATLPYHPRSGADEEEDSITRWRVRRRVRPGKVTLRDYDFKKPAA 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 238 SLYSQAEAVSGAAG----VYQHPGGYTA-KAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDW 312
Cdd:COG3501  239 DLEASASSPRDGDEgdleVYDYPGRYTAdPAEGERLARLRLEALRARAVRVEGESNVRGLAPGRRFTLTGHPRADLNGEY 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 313 VLTSVTHDAS----------HAHYRNRFEAIPKATAYRPARVTPKPRMH-TQTALVVGKAGEEIWTDQYGRIKIQFPWDR 381
Cdd:COG3501  319 LVTSVTHEGSqnlysgaggeDGGYRNRFTAIPADVPFRPPRRTPKPRIAgPQTATVVGPAGEEIHTDEYGRVKVQFHWDR 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 382 DGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKg 461
Cdd:COG3501  399 EGKKDENSSCWVRVAQPWAGAGWGGHFIPRVGQEVLVAFLDGDPDRPIVTGRVYNGANMPPYTLPANKTRSGIRTRSSP- 477

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 462 GGGFNELRFEDKKDAEEVFLQAQKDFNVNVLNDSTASIGHDETLTVQNARTRTVKeGDETVTLeKGKRTVTIqTGSDSLD 541
Cdd:COG3501  478 GGGFNELRFDDKAGQEEIFLHAEKDMNTLVDNDETITVGNDRTEEVGTDETGTVA-GNQGLTV-SGDQTVVV-GGNQTLV 554

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 542 VKDTRTVTVGADQTHSTGGNYSHKVSGNFELTVDGNLTIKVSGTLALQSGGSLTLKSDADLAAQAGTSLTSKAGTSLTNQ 621
Cdd:COG3501  555 VGGARTLVVGGNLAAVVGGAAATAGGAQATLVAGALLLLAAGGALTTVGGGGTTTGGGAAATAGGGGAGAAAGGAATAAA 634

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*..
gi 489180023 622 AGTSLTNKAGTSLTNDAGVSLTNKAGAEQTVDGGGMLTIKGGLVKVN 668
Cdd:COG3501  635 GAAATSAAGGASSAAAAAGGAAGAGGGGLAAAGGGGAAAAGGAGAGG 681
vgr_GE TIGR01646
Rhs element Vgr protein; This model represents the Vgr family of proteins, associated with ...
 21-486 2.73e-144

Rhs element Vgr protein; This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.


Pssm-ID: 273730 [Multi-domain]  Cd Length: 483  Bit Score: 428.82  E-value: 2.73e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   21 LFPERLAGEERLNALPGWELLGYSASP----LALDGAIAThLTATLHNDA-DQRPLDGLVAEIRQLPGDASAERYQVLLR 95
Cdd:TIGR01646   1 YTVLSFEGNEILSQPFTYELILRSADAdldlAAMLGKDAS-LSLELPDAAsTQRIFTGVIAGFSLGSTANGDARYSLVLR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   96 PWLWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVSRLLEEDGIFWFFTHAAGK 175
Cdd:TIGR01646  80 PWLWLLTRRRNNRIFQDTSVPDIIEEILREYGFADFRFDVAREYPQREYCVQYGETDFDFILRLLEEEGIIYYFEHDPKK 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  176 HTLVLADSNDAFPPIPNGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGTSLYSQAEAVSGAAGV--- 252
Cdd:TIGR01646 160 HILVAPDTSGQPQITLGYASLPFELPGAMDAREQSIYDWTRAQQVNSASVALVDYDFKNPTARLQAQSNISRQQAQVpdl 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  253 --YQHPGGYTAKAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDWVLTSVTH---------DA 321
Cdd:TIGR01646 240 eaYDYAGSYLDAQHGELYARLRLEALQSRAAKIQGEGNAAGLAPGQLFVLSGHPRNDQNNGYLIVSAIHsivqlgwdtGI 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  322 SHAHYRNRFEAIPKATAYRPArVTPKPRMH-TQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWS 400
Cdd:TIGR01646 320 QGYELPNQFIAIEVDVIWRPA-ATPLPKVNgPQIAVVVGAQGEEIHTDKYGRIRVHFHWDRYGQSNDYSSCWIRVAQPWA 398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  401 GKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKgGGGFNELRFEDKKDAEEVF 480
Cdd:TIGR01646 399 GKNWGSLAIPRVGQEVIVGFLDGDPDRPIVTGRVYNAANPPPYRLPAHNTQSGFKSRTLR-GGSQNQLRFDDDKGKEQLQ 477


                  ....*.
gi 489180023  481 LQAQKD 486
Cdd:TIGR01646 478 LHAERD 483
Phage_GPD pfam05954
Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D ...
 31-322 6.36e-104

Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences. This protein forms the phage central baseplate hub.


Pssm-ID: 428689  Cd Length: 302  Bit Score: 318.49  E-value: 6.36e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023   31 RLNALPGWELLGYSASP-LALDGAIATHLTATLHNDAD-QRPLDGLVAEIRQLPGDASAERYQVLLRPWLWWLTLASNNR 108
Cdd:pfam05954   1 GLSRLFEFELTLLSDDPdIDLKALLGQPVTVSIELDGGgPRYFHGIVTEFEQVGSDGRLTRYRLTLVPWLWLLTLRRDSR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  109 VFQNLATSDIVTQVFDQHGFSD-YQLQLSGSYQPREYCVQYGESDLAFVSRLLEEDGIFWFFTHAAGKHTLVLADSNDAF 187
Cdd:pfam05954  81 IFQNKTVPDILEAVLGEHGIAVaFRFRLTRSYPPREYCVQYRESDLAFVSRLLEEEGIFYFFEHAEGSHTLVLADDSSAL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  188 PPIPNGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPGTSLYSQAEAVSGAAG----VYQHPGGYTAKA 263
Cdd:pfam05954 161 PPSAGGPSLPYHPPSGTEAEGDHITRFTARRRLRPGTVTLRDYDYKKPRADLSAVAAAPQGAAGsayeVYDYPGRYDSSA 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  264 QGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGH-DDDSLNIDWVLTSVTHDAS 322
Cdd:pfam05954 241 EGERLARLRLEALRARARRFSGESNVRGLAPGRRFTLSGHpRRAAADREYLITRVEHTGS 300
Phage_base_V pfam04717
Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage ...
 367-435 1.45e-15

Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft. This entry represents the OB fold part of the structure. This structure contains an unusual extra beta hairpin that forms the foundation of the spike protein's beta helix.


Pssm-ID: 428084 [Multi-domain]  Cd Length: 75  Bit Score: 71.84  E-value: 1.45e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489180023  367 TDQYGRIKIQFPWdrdgKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVY 435
Cdd:pfam04717  11 PDKLGRVKVGVPW----LTDEEESGWARWAAPRAGAGRGLWFLPEVGEQVLVLFEGGDPSRPVVLGGLW 75
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 463-591 2.17e-09

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 60.54  E-value: 2.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 463 GGFNELRFEDKKDAEEV---FLQAQKDFNVNVLNDSTASIGHDETLTVQNARTRTVK-------EGDETVTLE------- 525
Cdd:PHA02596 420 GTYEEIRPDGTRVVKIVgddYYIVKQDRNVNVKGNLKVVVEGDAIYYNMGNVLQTIDgnvtifvRGNVTKTVEgngtlyv 499

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489180023 526 KGKRTVTIQtGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGNFELTVDGNLTIKVSGTLALQSG 591
Cdd:PHA02596 500 KGNVTVQVD-GNLDATVKGNATTLVEGNQTNTVNGNYKLKVEGNFDMTVGGNWSEQMAGMSSIASG 564
COG4253 COG4253
Uncharacterized conserved protein, DUF2345 family [Function unknown];
34-475 2.43e-09

Uncharacterized conserved protein, DUF2345 family [Function unknown];


Pssm-ID: 443395 [Multi-domain]  Cd Length: 900  Bit Score: 60.44  E-value: 2.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  34 ALPGWELLGYSASPLALDGAIATHLTATLHNDADQRPLDGLVAEIRQLPGDASAERYQVLLRPWLWWLTLASNNRVFQNL 113
Cdd:COG4253  109 ALLVLLALLLSLAGLPQRRQLSALALALVLAVLSRLQAFSRRALDELLALLLLRLRRRRALLRLRLADAALVRSTVEELL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 114 ATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYG--ESDLAFVSRLLEEDGIFWFFTHAAGKHTLVLADSNDAFPPIP 191
Cdd:COG4253  189 SRRHGDEVAFADDRLTERRASAEAASRADAAALRDLrlALRLARRAATAADDAQTTDDARLTADDSAADAGSLSGSGGDG 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 192 NGPQVAYLGQGIGVRELQGVRSAQYSL---------QAVSGTYSATDYEFTTPGTSLYSQAEAVSGAAGVYQHPGGYTAK 262
Cdd:COG4253  269 GAAGGSLAEATSSLRVPAASVSLARYQrarraaaaaAAADARAGGADAAGGVGTGGGRRLAAGLAGAAAEEEEAVGAEAR 348

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 263 AQGDSLTKQRIDGLRSQETRLIGESDCRWlvPGHWFTLSGHDDDSLNIDWVLTSVTHDASHAHYRNRFEAIPKATAYRPA 342
Cdd:COG4253  349 ARRRRLLRAARAAIRLLAAAALALLALGR--GALAGRSPAAAAGPGIVGGTDRRARRRATAFVDRAAGPPPRTQRARRPL 426

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 343 RVTPKPRMHTQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFID 422
Cdd:COG4253  427 LPRPRGAGGPPPRVVSTRAGDTPSADDDDGGRRVVRDDRRVAWVGGGESWGAGGGAGAGGGVGGGVVPLLGDGDVVIAAE 506

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489180023 423 GDPDRPLVTGCVYNGDNAlpyALPDNQTQSGIKTNSSKGGGGFNELRFEDKKD 475
Cdd:COG4253  507 GGGPPAPGGGAPAAHSAA---HLDHSSGALSGGNSRNTGGNGLNLLDDDDDEG 556
gpD COG3500
Phage protein D [Mobilome: prophages, transposons];
102-332 5.47e-06

Phage protein D [Mobilome: prophages, transposons];


Pssm-ID: 442723 [Multi-domain]  Cd Length: 336  Bit Score: 48.78  E-value: 5.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 102 TLASNNRVFQNLATSDIVTQVFDQHGFSdyqLQLSGSYQPREYCVQYGESDLAFVSRLLEE-DGIFWFfthaAGKhTLVL 180
Cdd:COG3500  112 LRTRRSRSWEDTTLSDIVRQIAGRHGLT---PKVDATSIKIEHIDQTNESDLDFLTRLAERnGAVVKV----KDG-KLVF 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 181 ADSNDAFPPipnGPQVAYLGQGIGVRELQGVRSAQYSlqAVSGTYsaTDYEFTTPGTSLYSQAEAVSGAAGVYQHPGGYT 260
Cdd:COG3500  184 KPPGAGESA---SPVLTLTGSDLISFSFRLDARGQYT--GVTARW--WDPKTKKLIEATASAPKLGSGADVLRLRHTPAA 256

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489180023 261 AKAQGDSLTKQRIDGLRSQETR----LIGESDcrwLVPGHWFTLSGHDDDsLNIDWVLTSVTHDASHAHYRNRFEA 332
Cdd:COG3500  257 SQAEAKAAAKAKLRKLQRGKVTgsvtLAGNPD---LRAGSPVELSGFGPR-FDGKYYVTSVTHTLSSGGYTTELEL 328
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 512-655 5.28e-05

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 46.29  E-value: 5.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023 512 TRTVK-EGDETV-------TLEKGKRTVTIQtGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGNFELTVDGNLTIKVS 583
Cdd:PHA02596 430 TRVVKiVGDDYYivkqdrnVNVKGNLKVVVE-GDAIYYNMGNVLQTIDGNVTIFVRGNVTKTVEGNGTLYVKGNVTVQVD 508

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489180023 584 GTLalqsggSLTLKSDADLAAQAGTSLTSKAGTSLTnQAGTSLTNKAGTslTNDAGVSLTNKAGAEQTVDGG 655
Cdd:PHA02596 509 GNL------DATVKGNATTLVEGNQTNTVNGNYKLK-VEGNFDMTVGGN--WSEQMAGMSSIASGTYTIDGS 571
Gp5_C pfam06715
Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the ...
 560-583 1.03e-04

Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane. Structurally three copies of the repeated region trimerize to form a beta solenoid type structure. This family also includes repeats from bacterial Vgr proteins.


Pssm-ID: 310962 [Multi-domain]  Cd Length: 24  Bit Score: 39.57  E-value: 1.03e-04
                          10        20
                  ....*....|....*....|....
gi 489180023  560 GNYSHKVSGNFELTVDGNLTIKVS 583
Cdd:pfam06715   1 GNETETVGGNRTVTVGGNETETVG 24
DUF6484 pfam20093
Domain of unknown function (DUF6484); This domain of unknown function is found in ...
 412-434 1.26e-04

Domain of unknown function (DUF6484); This domain of unknown function is found in uncharacterized proteins from Proteobacteria. This domain is approximately 80 amino acids in length and exhibits overlaps with pfam04717, which suggests that it has an OB fold and, thus, it belongs to the same clan. Many proteins containing this domain are related to the Type VI secretion system and to Phage-related baseplate proteins.


Pssm-ID: 466287 [Multi-domain]  Cd Length: 61  Bit Score: 40.24  E-value: 1.26e-04
                          10        20
                  ....*....|....*....|...
gi 489180023  412 IGQEVIVTFIDGDPDRPLVTGCV 434
Cdd:pfam20093  39 LGREVALLFEDGDPRRPLIMGLL 61
Cthe_2159 pfam14262
Carbohydrate-binding domain-containing protein Cthe_2159; Cthe_2159 from Clostridium ...
 474-668 7.13e-03

Carbohydrate-binding domain-containing protein Cthe_2159; Cthe_2159 from Clostridium thermocellum is the first representative of a novel family of cellulose and/or acid-sugar binding beta-helix proteins that share structural similarities with polysaccharide lyases.


Pssm-ID: 433819 [Multi-domain]  Cd Length: 264  Bit Score: 38.70  E-value: 7.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  474 KDAEEVFLQAQKDfNVNVLNDSTASIGHDE-------------------TLTVqNARTRTVKEGDETVTLEKGKRTVTIQ 534
Cdd:pfam14262  54 KNADKVFITLADG-TENTLSDGSTYTAIDDdepdaaifskddltingsgTLTV-TGNYKHGIVSKDDLKITSGTINVTAV 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  535 ----TGSDSLDVKD-TRTVTVGADQTHSTggnyshkvsgNFELTVDGNLTIkvsgtlalqSGGSLTLKSDADlAAQAGTS 609
Cdd:pfam14262 132 ddgiRGKDSLVIKGgTITITAGGDGIKSE----------NDEDATKGYVYI---------TGGTFTITAGDD-GIQAETD 191

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 489180023  610 LTSKAGTsLTNQAGtsltnkaGTSLTNDAGVSLTNKAgaeqtVDGGGMLTIKGGLVKVN 668
Cdd:pfam14262 192 LTINGGT-ITITTG-------GGSETSSDSDDTSAKG-----IKAGGSITINGGTITID 237
PRK15319 PRK15319
fibronectin-binding autotransporter adhesin ShdA;
494-662 9.98e-03

fibronectin-binding autotransporter adhesin ShdA;


Pssm-ID: 185219 [Multi-domain]  Cd Length: 2039  Bit Score: 39.30  E-value: 9.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  494 DSTASIGhdeTLTVQNARTRTVKEGDETVTLekgkrtvtiqTGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGNFELT 573
Cdd:PRK15319  972 DHADSLG---TGAVANSGVLQVGEGELENTL----------SGSGSLVKTGTGELTLGGDNSYSGDTTIADGTLIAANVN 1038

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489180023  574 VDGNLTIKVSGTLALQSGGSLTLksdADLAAQAGTSLTSKAGTSLtnQAGtSLTNKAGTSLTNDAGVSLTNKAGAEQTVD 653
Cdd:PRK15319 1039 ALGSGNIDNSGTLMLDANGAFEL---ANITTHSGATTALAAGSTL--DAG-QLTQEDGSTLSIDLGAATDDAVITADSVT 1112


                  ....*....
gi 489180023  654 GGGMLTIKG 662
Cdd:PRK15319 1113 LGGTLNVTG 1121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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