|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
21-345 |
2.08e-153 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 439.21 E-value: 2.08e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 21 LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTG 100
Cdd:COG3829 140 IIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 101 ALQS-KAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLF 179
Cdd:COG3829 220 AKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLY 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 180 YRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQP 259
Cdd:COG3829 300 YRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITP 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 260 ADLhlidmrarqePSGLRRAPESAAGSAleaalqalfEENREDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISRNIVRA 339
Cdd:COG3829 380 EHL----------PEYLLEEAEAASAAE---------EGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYR 440
|
....*.
gi 489179993 340 RLEKIG 345
Cdd:COG3829 441 KLKKYG 446
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
29-338 |
1.07e-105 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 319.43 E-value: 1.07e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 29 RELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSKAGW 108
Cdd:PRK05022 197 QQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGK 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 109 FEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVATIQ 188
Cdd:PRK05022 277 FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLS 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 189 LPPLRERRGDILPLAEYFiVEHCR-RLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNR------LIQPAD 261
Cdd:PRK05022 357 VPPLRERGDDVLLLAGYF-LEQNRaRLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARgagrivTLEAQH 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489179993 262 LHLidmrarqepsglrRAPESAAGSALEAALQALFEENREDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISR-NIVR 338
Cdd:PRK05022 436 LDL-------------PAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRaNLHR 500
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
21-188 |
2.12e-105 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 306.64 E-value: 2.12e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 21 LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTG 100
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 101 ALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFY 180
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 489179993 181 RLHVATIQ 188
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
26-334 |
1.20e-102 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 312.19 E-value: 1.20e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 26 PRSRELLERIERLAP-SEANALVIGETGTGKELVARHIHALSGRSG---GPFVAVNCGAFAESLVESELFGHEKGAFTGA 101
Cdd:NF038308 186 AAFNRLIEQIERVALrSRAPILLTGPTGAGKSFLARRIYELKKRRHqvsGPFVEVNCATLRGDLAMSELFGHVKGAFTGA 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 102 LQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYR 181
Cdd:NF038308 266 QADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYAR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 182 LHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTS-----ASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRL 256
Cdd:NF038308 346 INLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVrfnkeARFRYLAFATSPEALWPGNFRELSASVTRMATLADGGR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 257 IQPADLHlidmrarQEPSGLRRAPESAAGSALEAALQALFEENRE---DLYEHIE-ETVFRAAyRFCHGNQLQTGRLLGI 332
Cdd:NF038308 426 ITEELVE-------EEIARLRAAWQSAPAAADDDALADLLGGEQLaelDLFDRVQlAAVLRVC-RQSRSLSAAGRRLFGV 497
|
..
gi 489179993 333 SR 334
Cdd:NF038308 498 SR 499
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
10-345 |
4.66e-99 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 300.51 E-value: 4.66e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 10 RELTKSVRATV---LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLV 86
Cdd:TIGR02915 127 RRLQSALGGTAlrgLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 87 ESELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLA 166
Cdd:TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLK 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 167 DAVVAGHFREDLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIH 246
Cdd:TIGR02915 287 RMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVK 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 247 HALLVCRNRLIQPADLhlidmrarqepsGLRRAPESAAGSALeaalqalfeeNREDLYEHIEETVFRAAYRFCHGNQLQT 326
Cdd:TIGR02915 367 RAVIMAEGNQITAEDL------------GLDARERAETPLEV----------NLREVRERAEREAVRKAIARVDGNIARA 424
|
330
....*....|....*....
gi 489179993 327 GRLLGISRNIVRARLEKIG 345
Cdd:TIGR02915 425 AELLGITRPTLYDLMKKHG 443
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
29-182 |
5.06e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 93.75 E-value: 5.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 29 RELLERIERlaPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALqskagw 108
Cdd:cd00009 8 EALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL------ 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489179993 109 FEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRrpipiDVRLVAATNVDLadavvAGHFREDLFYRL 182
Cdd:cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRE-----NVRVIGATNRPL-----LGDLDRALYDRL 143
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
46-182 |
1.47e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.92 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 46 LVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVE--SELFGHEKGAFTGALQSKAGWFEAA---NGGTLFLD 120
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALArklKPDVLILD 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489179993 121 EIGDLPPSIQVKLLRVLQErevVRLGSRRPIPIDVRLVAATN--VDLADAVVAGHFREDLFYRL 182
Cdd:smart00382 86 EITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
21-345 |
2.08e-153 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 439.21 E-value: 2.08e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 21 LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTG 100
Cdd:COG3829 140 IIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 101 ALQS-KAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLF 179
Cdd:COG3829 220 AKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLY 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 180 YRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQP 259
Cdd:COG3829 300 YRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITP 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 260 ADLhlidmrarqePSGLRRAPESAAGSAleaalqalfEENREDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISRNIVRA 339
Cdd:COG3829 380 EHL----------PEYLLEEAEAASAAE---------EGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYR 440
|
....*.
gi 489179993 340 RLEKIG 345
Cdd:COG3829 441 KLKKYG 446
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
8-345 |
2.42e-128 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 374.30 E-value: 2.42e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 8 HARELTKSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVE 87
Cdd:COG2204 120 RRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 88 SELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLAD 167
Cdd:COG2204 200 SELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 168 AVVAGHFREDLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGyTSASLSPEAERKLLGHSWAGNIRELENAIHH 247
Cdd:COG2204 280 LVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELG-KPVKLSPEALEALLAYDWPGNVRELENVIER 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 248 ALLVCRNRLIQPADLhlidmrarqepsglrrapesaagsaleaalqalfeenrEDLYEHIEETVFRAAYRFCHGNQLQTG 327
Cdd:COG2204 359 AVILADGEVITAEDL--------------------------------------PEALEEVERELIERALEETGGNVSRAA 400
|
330
....*....|....*...
gi 489179993 328 RLLGISRNIVRARLEKIG 345
Cdd:COG2204 401 ELLGISRRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
1-345 |
1.92e-113 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 343.04 E-value: 1.92e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 1 MSVITHPHARELTKSVRAT-------VLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPF 73
Cdd:COG3284 296 ALLRLRPARRAARAAPAGApapaalaALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPF 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 74 VAVNCGAFAESLVESELFGHEKGAFTGALQS-KAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIP 152
Cdd:COG3284 376 VAVNCAAIPEELIESELFGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIP 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 153 IDVRLVAATNVDLADAVVAGHFREDLFYRLHVATIQLPPLRErRGDILPLAEYFIVEHCRRLGytSASLSPEAERKLLGH 232
Cdd:COG3284 456 VDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRE-REDLPALIEHLLRELAAGRG--PLRLSPEALALLAAY 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 233 SWAGNIRELENAIHHALLVCRNRLIQPADLhlidmrarqePSGLRRAPESAAGSAlEAALQALfeenredlyEHIEETVF 312
Cdd:COG3284 533 PWPGNVRELRNVLRTALALADGGVITVEDL----------PDELRAELAAAAPAA-AAPLTSL---------EEAERDAI 592
|
330 340 350
....*....|....*....|....*....|...
gi 489179993 313 RAAYRFCHGNQLQTGRLLGISRNIVRARLEKIG 345
Cdd:COG3284 593 LRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
29-338 |
1.07e-105 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 319.43 E-value: 1.07e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 29 RELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSKAGW 108
Cdd:PRK05022 197 QQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGK 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 109 FEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVATIQ 188
Cdd:PRK05022 277 FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLS 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 189 LPPLRERRGDILPLAEYFiVEHCR-RLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNR------LIQPAD 261
Cdd:PRK05022 357 VPPLRERGDDVLLLAGYF-LEQNRaRLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARgagrivTLEAQH 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489179993 262 LHLidmrarqepsglrRAPESAAGSALEAALQALFEENREDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISR-NIVR 338
Cdd:PRK05022 436 LDL-------------PAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRaNLHR 500
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
21-188 |
2.12e-105 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 306.64 E-value: 2.12e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 21 LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTG 100
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 101 ALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFY 180
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 489179993 181 RLHVATIQ 188
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
26-334 |
1.20e-102 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 312.19 E-value: 1.20e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 26 PRSRELLERIERLAP-SEANALVIGETGTGKELVARHIHALSGRSG---GPFVAVNCGAFAESLVESELFGHEKGAFTGA 101
Cdd:NF038308 186 AAFNRLIEQIERVALrSRAPILLTGPTGAGKSFLARRIYELKKRRHqvsGPFVEVNCATLRGDLAMSELFGHVKGAFTGA 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 102 LQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYR 181
Cdd:NF038308 266 QADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYAR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 182 LHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTS-----ASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRL 256
Cdd:NF038308 346 INLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVrfnkeARFRYLAFATSPEALWPGNFRELSASVTRMATLADGGR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 257 IQPADLHlidmrarQEPSGLRRAPESAAGSALEAALQALFEENRE---DLYEHIE-ETVFRAAyRFCHGNQLQTGRLLGI 332
Cdd:NF038308 426 ITEELVE-------EEIARLRAAWQSAPAAADDDALADLLGGEQLaelDLFDRVQlAAVLRVC-RQSRSLSAAGRRLFGV 497
|
..
gi 489179993 333 SR 334
Cdd:NF038308 498 SR 499
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
10-345 |
4.66e-99 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 300.51 E-value: 4.66e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 10 RELTKSVRATV---LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLV 86
Cdd:TIGR02915 127 RRLQSALGGTAlrgLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 87 ESELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLA 166
Cdd:TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLK 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 167 DAVVAGHFREDLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIH 246
Cdd:TIGR02915 287 RMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVK 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 247 HALLVCRNRLIQPADLhlidmrarqepsGLRRAPESAAGSALeaalqalfeeNREDLYEHIEETVFRAAYRFCHGNQLQT 326
Cdd:TIGR02915 367 RAVIMAEGNQITAEDL------------GLDARERAETPLEV----------NLREVRERAEREAVRKAIARVDGNIARA 424
|
330
....*....|....*....
gi 489179993 327 GRLLGISRNIVRARLEKIG 345
Cdd:TIGR02915 425 AELLGITRPTLYDLMKKHG 443
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
26-264 |
6.40e-96 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 294.40 E-value: 6.40e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 26 PRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSK 105
Cdd:COG3283 211 PKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFGNAREGK 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 106 AGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVA 185
Cdd:COG3283 291 KGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVL 370
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489179993 186 TIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQPADLHL 264
Cdd:COG3283 371 TLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDLQL 449
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
14-345 |
1.65e-94 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 291.62 E-value: 1.65e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 14 KSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGH 93
Cdd:TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGH 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 94 EKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGH 173
Cdd:TIGR01817 271 EKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 174 FREDLFYRLHVATIQLPPLRERRGDILPLAEYFiVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCR 253
Cdd:TIGR01817 351 FRADLYYRINVVPIFLPPLRERREDIPLLAEAF-LEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSR 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 254 NRLIQPADL------HLIDMRARQEPSGLR--------RAPESAAGSALEAALQALFE--ENREDLYEHIEEtvfraayr 317
Cdd:TIGR01817 430 SGTITRSDFscqsgqCLSPMLAKTCPHGHIsidplagtTPPHSPASAALPGEPGLSGPtlSERERLIAALEQ-------- 501
|
330 340
....*....|....*....|....*...
gi 489179993 318 fCHGNQLQTGRLLGISRNIVRARLEKIG 345
Cdd:TIGR01817 502 -AGWVQAKAARLLGMTPRQVGYALRKLN 528
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
21-343 |
9.14e-94 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 286.93 E-value: 9.14e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 21 LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTG 100
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 101 ALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFY 180
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 181 RLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQpa 260
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYIS-- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 261 dlhlidmrARQEPSGLRRAPESAAGSaleAALQALFEenredlyehIEETVFRAAYRFCHGNQLQTGRLLGISRNIVRAR 340
Cdd:PRK10365 379 --------ERELPLAIASTPIPLGQS---QDIQPLVE---------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438
|
...
gi 489179993 341 LEK 343
Cdd:PRK10365 439 LSR 441
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
4-346 |
1.16e-93 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 287.13 E-value: 1.16e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 4 ITHPHaRELTKSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAE 83
Cdd:PRK11361 129 IRHLH-QALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 84 SLVESELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNV 163
Cdd:PRK11361 208 SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 164 DLADAVVAGHFREDLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELEN 243
Cdd:PRK11361 288 DLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSN 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 244 AIHHALLVCRNRLIQPADLhlidmrarqePSGLrRAPESAAGSAlEAALQAlfEENREDLYEHIEETVFRAAYRFCHGNQ 323
Cdd:PRK11361 368 VIERAVVMNSGPIIFSEDL----------PPQI-RQPVCNAGEV-KTAPVG--ERNLKEEIKRVEKRIIMEVLEQQEGNR 433
|
330 340
....*....|....*....|...
gi 489179993 324 LQTGRLLGISRnivRARLEKIGE 346
Cdd:PRK11361 434 TRTALMLGISR---RALMYKLQE 453
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
17-347 |
3.46e-92 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 283.55 E-value: 3.46e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 17 RATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKG 96
Cdd:TIGR01818 132 DSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKG 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 97 AFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFRE 176
Cdd:TIGR01818 212 AFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFRE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 177 DLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRL 256
Cdd:TIGR01818 292 DLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 257 IQ----PADLHLIDMRARQ----EPSGLRRAPESAAGSALEAALQALFEENREDLyehiEETVFRAAYRFCHGNQLQTGR 328
Cdd:TIGR01818 372 VLvsdlPAELALTGRPASApdsdGQDSWDEALEAWAKQALSRGEQGLLDRALPEF----ERPLLEAALQHTRGHKQEAAA 447
|
330
....*....|....*....
gi 489179993 329 LLGISRNIVRarlEKIGEL 347
Cdd:TIGR01818 448 LLGWGRNTLT---RKLKEL 463
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
24-343 |
1.68e-86 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 271.21 E-value: 1.68e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 24 NDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHA--------LSGRSGGPFVAVNCGAFAESLVESELFGHEK 95
Cdd:PRK15424 224 QSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHReyfarhdaRQGKKSHPFVAVNCGAIAESLLEAELFGYEE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 96 GAFTGALQS-KAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHF 174
Cdd:PRK15424 304 GAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRF 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 175 REDLFYRLHVATIQLPPLRERRGDILPLAEYFIVehcRRLGYTSASLSPEAERKLLGH-------SWAGNIRELENAIHH 247
Cdd:PRK15424 384 RRDLFYRLSILRLQLPPLRERVADILPLAESFLK---QSLAALSAPFSAALRQGLQQCetlllhyDWPGNVRELRNLMER 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 248 ALLVCRNRLIQPADLHLIdmrarqepsgLRRAPESAAGSALEAALQALFEENREDLYEHieetvfraayrfcHGNQLQTG 327
Cdd:PRK15424 461 LALFLSVEPTPDLTPQFL----------QLLLPELARESAKTPAPRLLAATLQQALERF-------------NGDKTAAA 517
|
330
....*....|....*.
gi 489179993 328 RLLGISRNIVRARLEK 343
Cdd:PRK15424 518 NYLGISRTTLWRRLKA 533
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
30-343 |
2.09e-86 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 264.23 E-value: 2.09e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 30 ELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSKAGWF 109
Cdd:PRK11608 17 EVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 110 EAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVATIQL 189
Cdd:PRK11608 97 ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 190 PPLRERRGDILPLAEYFIVEHCRRLGYT-SASLSPEAERKLLGHSWAGNIRELENAIHHAllVCRNRLI-QPADLHLIDM 267
Cdd:PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGLPlFPGFTERARETLLNYRWPGNIRELKNVVERS--VYRHGTSeYPLDNIIIDP 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489179993 268 RARQEPSGLRRAPESAAGSALEAALQALFEENREDLYEHieetvfraAYRFCHGNQLQTGRLLGISRNIVRARLEK 343
Cdd:PRK11608 255 FKRRPAEEAIAVSETTSLPTLPLDLREWQHQQEKELLQR--------SLQQAKFNQKRAAELLGLTYHQLRALLKK 322
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
35-343 |
2.27e-86 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 270.58 E-value: 2.27e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 35 IERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQS-KAGWFEAAN 113
Cdd:TIGR02329 228 VRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGgRTGLIEAAH 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 114 GGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVATIQLPPLR 193
Cdd:TIGR02329 308 RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLR 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 194 ERRGDILPLAEYFIVehcRRLGYTSASLSPEAERKLLG-------HSWAGNIRELENaihhallvcrnrLIQPADLHLID 266
Cdd:TIGR02329 388 ERPGDILPLAAEYLV---QAAAALRLPDSEAAAQVLAGvadplqrYPWPGNVRELRN------------LVERLALELSA 452
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489179993 267 MRARQEPSGLRR--APESAagsalEAALQALFEENREDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISRNIVRARLEK 343
Cdd:TIGR02329 453 MPAGALTPDVLRalAPELA-----EASGKGKTSALSLRERSRVEALAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
26-345 |
4.35e-82 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 257.49 E-value: 4.35e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 26 PRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSK 105
Cdd:PRK10923 145 PAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIR 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 106 AGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVA 185
Cdd:PRK10923 225 QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 186 TIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQPADLHlI 265
Cdd:PRK10923 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLP-G 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 266 DMRARQEPSGLRRA-PESAAGSALEAALQALfEENREDLYEH----IEETVFRAAYRFCHGNQLQTGRLLGISRNIVRAR 340
Cdd:PRK10923 384 ELFESTVPESTSQMqPDSWATLLAQWADRAL-RSGHQNLLSEaqpeLERTLLTTALRHTQGHKQEAARLLGWGRNTLTRK 462
|
....*
gi 489179993 341 LEKIG 345
Cdd:PRK10923 463 LKELG 467
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
21-305 |
1.06e-80 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 253.22 E-value: 1.06e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 21 LVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTG 100
Cdd:PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 101 ALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFY 180
Cdd:PRK15115 216 AVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 181 RLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQPA 260
Cdd:PRK15115 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDA 375
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 489179993 261 DLH------------LIDMRARQEPSGLRRAPESAAGSALEAALQAlfEENREDLYE 305
Cdd:PRK15115 376 LVEqalegentalptFVEARNQFELNYLRKLLQITKGNVTHAARMA--GRNRTEFYK 430
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
26-269 |
2.20e-78 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 249.60 E-value: 2.20e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 26 PRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSK 105
Cdd:PRK10820 211 PKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGK 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 106 AGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVA 185
Cdd:PRK10820 291 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 186 TIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQPADLHLI 265
Cdd:PRK10820 371 TLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLP 450
|
....
gi 489179993 266 DMRA 269
Cdd:PRK10820 451 DYDA 454
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
31-258 |
1.43e-76 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 248.98 E-value: 1.43e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 31 LLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSKAGWFE 110
Cdd:PRK15429 388 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 111 AANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVATIQLP 190
Cdd:PRK15429 468 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 547
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489179993 191 PLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQ 258
Cdd:PRK15429 548 PLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ 615
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
25-345 |
5.23e-70 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 222.42 E-value: 5.23e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 25 DPRSRELLERIERLApseANALvIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESelfghekgaftgalqs 104
Cdd:COG3604 102 SEEDLRLLETLASLA---AVAI-LGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES---------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 105 kagwfeaanggtlfldeigdlppsiqvkllrvLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHV 184
Cdd:COG3604 162 --------------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNV 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 185 ATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQPADLHL 264
Cdd:COG3604 210 FPIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAP 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 265 IDmrarqepsglrrapesaagsaleaalqalFEENREDLYEHIEETVFRaayrfCHGNQLQTGRLLGISRNIVRARLEKI 344
Cdd:COG3604 290 GS-----------------------------REALEEVEREHILEALER-----TGGNIAGAARLLGLTPSTLRSRMKKL 335
|
.
gi 489179993 345 G 345
Cdd:COG3604 336 G 336
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
6-334 |
2.30e-59 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 202.22 E-value: 2.30e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 6 HP--HARELTKS-VRATVLVFN-----DPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVN 77
Cdd:PRK11388 304 HPveQMRQLMTSqLGKVSHTFDhmpqdSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVN 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 78 CGAFAESLVESELFGhekGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRL 157
Cdd:PRK11388 384 CQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRV 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 158 VAATNVDLADAVVAGHFREDLFYRLHVATIQLPPLRERRGDIlPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGN 237
Cdd:PRK11388 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDI-PALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGN 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 238 IRELENAIHHALLVCRNRLIQPADLhlidmrarqePSGLR--RAPESAAGSALEAALQalfeenredLYEHIEETVFRAA 315
Cdd:PRK11388 540 DFELRSVIENLALSSDNGRIRLSDL----------PEHLFteQATDDVSATRLSTSLS---------LAELEKEAIINAA 600
|
330
....*....|....*....
gi 489179993 316 yRFCHGNQLQTGRLLGISR 334
Cdd:PRK11388 601 -QVCGGRIQEMAALLGIGR 618
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
31-245 |
9.43e-49 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 171.94 E-value: 9.43e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 31 LLERIERLA-PSEANALVIGETGTGKELVARHIHALS---GRSGGPFVAVNC------GAFaeslveSELFGHEKGAFTG 100
Cdd:COG4650 196 LIEQIERVAiRSRAPILLTGPTGAGKSQLARRIYELKkarHQVSGRFVEVNCatlrgdGAM------SALFGHVKGAFTG 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 101 ALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFY 180
Cdd:COG4650 270 AVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLA 349
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489179993 181 RLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGyTSASLSPEAERKLLGH------SWAGNIRELENAI 245
Cdd:COG4650 350 RINLWTFRLPGLAERREDIEPNLDYELARFAREQG-RRVRFNKEARARYLAFatspeaLWSGNFRDLNASV 419
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
46-252 |
2.98e-33 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 131.00 E-value: 2.98e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 46 LVIGETGTGKELVARHIH--ALS-GR--SGGPFVAVNCGAFAES--LVESELFGHEKGAFTGALQSKAGWFEAANGGTLF 118
Cdd:COG1221 134 LILGPTGVGKSFFAELMYeyAIEiGVlpEDAPFVVFNCADYANNpqLLMSQLFGYVKGAFTGADKDKEGLIEKADGGILF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 119 LDEIGDLPPSIQVKLLRVLQEREVVRLG-SRRPIPIDVRLVAATNvdladavvaghfrEDL-------FYRLHVATIQLP 190
Cdd:COG1221 214 LDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATT-------------EDPessllktFLRRIPMVIKLP 280
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489179993 191 PLRERrgdilPLAE------YFIVEHCRRLGyTSASLSPEAERKLLGHSWAGNIRELENAIHhalLVC 252
Cdd:COG1221 281 SLEER-----SLEErlelikHFFKEEAKRLN-KPIKVSKEVLKALLLYDCPGNIGQLKSDIQ---LAC 339
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
29-182 |
5.06e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 93.75 E-value: 5.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 29 RELLERIERlaPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALqskagw 108
Cdd:cd00009 8 EALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL------ 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489179993 109 FEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRrpipiDVRLVAATNVDLadavvAGHFREDLFYRL 182
Cdd:cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRE-----NVRVIGATNRPL-----LGDLDRALYDRL 143
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
24-192 |
1.14e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 86.63 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 24 NDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGafaeslveselfghekgaftgalQ 103
Cdd:pfam14532 3 ASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLA-----------------------H 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 104 SKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREvvrlgsrrpiPIDVRLVAATNVDLADAVVAGHFREDLFYRLH 183
Cdd:pfam14532 60 APLELLEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFELS 129
|
....*....
gi 489179993 184 VATIQLPPL 192
Cdd:pfam14532 130 ALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
46-182 |
1.47e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.92 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 46 LVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVE--SELFGHEKGAFTGALQSKAGWFEAA---NGGTLFLD 120
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALArklKPDVLILD 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489179993 121 EIGDLPPSIQVKLLRVLQErevVRLGSRRPIPIDVRLVAATN--VDLADAVVAGHFREDLFYRL 182
Cdd:smart00382 86 EITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
46-162 |
3.00e-10 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 57.69 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 46 LVIGETGTGKELVARHI-HALSGRsggPFVAVNCGAFAEslvESELFG----------HEKGAFTGALQSkagwfeaanG 114
Cdd:pfam07728 3 LLVGPPGTGKTELAERLaAALSNR---PVFYVQLTRDTT---EEDLFGrrnidpggasWVDGPLVRAARE---------G 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 489179993 115 GTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPI---PIDVRLVAATN 162
Cdd:pfam07728 68 EIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVkaaPDGFRLIATMN 118
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
287-345 |
1.17e-05 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 43.26 E-value: 1.17e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489179993 287 ALEAALQALFE----ENREDLYEHI----EETVFRAAYRFCHGNQLQTGRLLGISRNIVRARLEKIG 345
Cdd:COG2901 15 CVRQALENYFAdldgEPPSDLYDMVlaevEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYG 81
|
|
| HTH_30 |
pfam13556 |
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the ... |
315-347 |
7.62e-03 |
|
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Swiss:O32138 and is likely to be DNA-binding.
Pssm-ID: 433305 [Multi-domain] Cd Length: 56 Bit Score: 34.35 E-value: 7.62e-03
10 20 30
....*....|....*....|....*....|...
gi 489179993 315 AYRFCHGNQLQTGRLLGISRNIVRARLEKIGEL 347
Cdd:pfam13556 4 AYLENGGNISATARALHVHRNTLRYRLRRIEEL 36
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
46-122 |
8.35e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 36.03 E-value: 8.35e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489179993 46 LVIGETGTGKELVARhihALSGRSGGPFVAVNCgafaeslveSELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEI 122
Cdd:pfam00004 2 LLYGPPGTGKTTLAK---AVAKELGAPFIEISG---------SELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEI 66
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
26-122 |
9.50e-03 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 36.49 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489179993 26 PRSRELLERIERLAPSeaNALVIGETGTGKELVARhihALSGRSGGPFVAVNCGAFAESLV-ESELFGHEkgAFTGAlqs 104
Cdd:cd19481 12 PRRGSRLRRYGLGLPK--GILLYGPPGTGKTLLAK---ALAGELGLPLIVVKLSSLLSKYVgESEKNLRK--IFERA--- 81
|
90
....*....|....*...
gi 489179993 105 kagwfEAANGGTLFLDEI 122
Cdd:cd19481 82 -----RRLAPCILFIDEI 94
|
|
| |
